CmaCh05G005620 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G005620
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionocticosapeptide/Phox/Bem1p (PB1) domain-containing protein
LocationCma_Chr05: 2757416 .. 2758771 (-)
RNA-Seq ExpressionCmaCh05G005620
SyntenyCmaCh05G005620
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAATTATTCCTACTCCTATGCTGATTCTCGAGACTCCTCTCCTCGTTCCAGTGATAACCCCTCTTGGGACGAGACGCCTTCCAACCTCAACGCCGTCAACAATTACAAAGTCAAATTCATGTGCAGCTATGGCGGCAAGATACAGCCCAGAGCTCATGACAATCAACTCACTTACACCGGTGGCGACACCAAGATTCTCGCCGTTGATCGTATTATCAGTTTCTCCGCGCTCTCCTCCAGGTTATCTGCTCTCTGCAATGTTACTGTTTGTTTTAAGTACCAACTCCCTGGCGAAGATCTCGATGCGTTGATTTCTGTTACTAACGATGAGGATCTCGAACATATGATGTTAGAGTACGACCGGTTGCATCGCGTCTCGAAGCCTGCGAGGATGAGGCTTTTTCTGTTCCCTCTAAATCCATCTCCCTCGACGATTCTTGATTCCCGGGATTCTAAATCGGACAGGCAGTGGTTCGTCGATGCTTTGAATTCTGTGCGGATTCAGTCTCTGGAAGATTCGTCGCCGCCTGTGGATGTTTCTGGATCTGTCTCGAATCCTGATTTCTTGTTTGGATTTGATAAAGGTTACCATCCGCCTCCGGTTTCTTGTTCTAACTTGACCGATTCGGCCGCCGTTCATAACGTGTCGAATATGGCGGTGAAGGACATTTCGGCGGGGTCTGATTGTGGATCTGATGATCGTCATGTGGTCGGAGAACCTGTTGTTTCTCCGTCGGAGTTTCAGAGGCAGATTCAGGATTTGCAGCAAGTGATAACCGAGAGAAGTAGCAATGAGACTGACTCCAAGTCTTCTGCAAGCGATCCTCACCCACCAATGGTTGCAGAGAAAATTGCTCCACCACCGACAGCAGTTCCTCTGTCTGTACCATTGGCAGTCCCTGCGGCGTACTTCCCTGAAAGGCAGGTGATCTCCGGTGGTTATCCAGTGGCTGCATCAGCCAATGCTCCGTCGACCGACCAATCAATATATCTAATTCCAACAGCCGGGGGTTTATTTCAAGCTCAGACGTGTAGACCCATCAATGGACCAGTTGGGCACCAGCCTTATTACGGAATGCATGCATACCGTGAAGCCCAGGTTCACAGTTCGGTTGCACCTTACACCACAGAGGGAATTCAAGTGATGCAGACAAGTGTTGCGATGAATGAGTCTGGCTACACTCAGGTTGCGTATGACAACACCGGCAGACATGTTTACTTTACCACCGCGCCGCCTTATCAGACCATGGCTCCGGTGGGGGTTGATCATGGGAGACCTACTACCAGTGGTGCAGGCTCCTATAATCCGGAGGGTAATGTGATTAACGCTTCCAAGGCCTCTGGTTTGTGA

mRNA sequence

ATGGAAAATTATTCCTACTCCTATGCTGATTCTCGAGACTCCTCTCCTCGTTCCAGTGATAACCCCTCTTGGGACGAGACGCCTTCCAACCTCAACGCCGTCAACAATTACAAAGTCAAATTCATGTGCAGCTATGGCGGCAAGATACAGCCCAGAGCTCATGACAATCAACTCACTTACACCGGTGGCGACACCAAGATTCTCGCCGTTGATCGTATTATCAGTTTCTCCGCGCTCTCCTCCAGGTTATCTGCTCTCTGCAATGTTACTGTTTGTTTTAAGTACCAACTCCCTGGCGAAGATCTCGATGCGTTGATTTCTGTTACTAACGATGAGGATCTCGAACATATGATGTTAGAGTACGACCGGTTGCATCGCGTCTCGAAGCCTGCGAGGATGAGGCTTTTTCTGTTCCCTCTAAATCCATCTCCCTCGACGATTCTTGATTCCCGGGATTCTAAATCGGACAGGCAGTGGTTCGTCGATGCTTTGAATTCTGTGCGGATTCAGTCTCTGGAAGATTCGTCGCCGCCTGTGGATGTTTCTGGATCTGTCTCGAATCCTGATTTCTTGTTTGGATTTGATAAAGGTTACCATCCGCCTCCGGTTTCTTGTTCTAACTTGACCGATTCGGCCGCCGTTCATAACGTGTCGAATATGGCGGTGAAGGACATTTCGGCGGGGTCTGATTGTGGATCTGATGATCGTCATGTGGTCGGAGAACCTGTTGTTTCTCCGTCGGAGTTTCAGAGGCAGATTCAGGATTTGCAGCAAGTGATAACCGAGAGAAGTAGCAATGAGACTGACTCCAAGTCTTCTGCAAGCGATCCTCACCCACCAATGGTTGCAGAGAAAATTGCTCCACCACCGACAGCAGTTCCTCTGTCTGTACCATTGGCAGTCCCTGCGGCGTACTTCCCTGAAAGGCAGGTGATCTCCGGTGGTTATCCAGTGGCTGCATCAGCCAATGCTCCGTCGACCGACCAATCAATATATCTAATTCCAACAGCCGGGGGTTTATTTCAAGCTCAGACGTGTAGACCCATCAATGGACCAGTTGGGCACCAGCCTTATTACGGAATGCATGCATACCGTGAAGCCCAGGTTCACAGTTCGGTTGCACCTTACACCACAGAGGGAATTCAAGTGATGCAGACAAGTGTTGCGATGAATGAGTCTGGCTACACTCAGGTTGCGTATGACAACACCGGCAGACATGTTTACTTTACCACCGCGCCGCCTTATCAGACCATGGCTCCGGTGGGGGTTGATCATGGGAGACCTACTACCAGTGGTGCAGGCTCCTATAATCCGGAGGGTAATGTGATTAACGCTTCCAAGGCCTCTGGTTTGTGA

Coding sequence (CDS)

ATGGAAAATTATTCCTACTCCTATGCTGATTCTCGAGACTCCTCTCCTCGTTCCAGTGATAACCCCTCTTGGGACGAGACGCCTTCCAACCTCAACGCCGTCAACAATTACAAAGTCAAATTCATGTGCAGCTATGGCGGCAAGATACAGCCCAGAGCTCATGACAATCAACTCACTTACACCGGTGGCGACACCAAGATTCTCGCCGTTGATCGTATTATCAGTTTCTCCGCGCTCTCCTCCAGGTTATCTGCTCTCTGCAATGTTACTGTTTGTTTTAAGTACCAACTCCCTGGCGAAGATCTCGATGCGTTGATTTCTGTTACTAACGATGAGGATCTCGAACATATGATGTTAGAGTACGACCGGTTGCATCGCGTCTCGAAGCCTGCGAGGATGAGGCTTTTTCTGTTCCCTCTAAATCCATCTCCCTCGACGATTCTTGATTCCCGGGATTCTAAATCGGACAGGCAGTGGTTCGTCGATGCTTTGAATTCTGTGCGGATTCAGTCTCTGGAAGATTCGTCGCCGCCTGTGGATGTTTCTGGATCTGTCTCGAATCCTGATTTCTTGTTTGGATTTGATAAAGGTTACCATCCGCCTCCGGTTTCTTGTTCTAACTTGACCGATTCGGCCGCCGTTCATAACGTGTCGAATATGGCGGTGAAGGACATTTCGGCGGGGTCTGATTGTGGATCTGATGATCGTCATGTGGTCGGAGAACCTGTTGTTTCTCCGTCGGAGTTTCAGAGGCAGATTCAGGATTTGCAGCAAGTGATAACCGAGAGAAGTAGCAATGAGACTGACTCCAAGTCTTCTGCAAGCGATCCTCACCCACCAATGGTTGCAGAGAAAATTGCTCCACCACCGACAGCAGTTCCTCTGTCTGTACCATTGGCAGTCCCTGCGGCGTACTTCCCTGAAAGGCAGGTGATCTCCGGTGGTTATCCAGTGGCTGCATCAGCCAATGCTCCGTCGACCGACCAATCAATATATCTAATTCCAACAGCCGGGGGTTTATTTCAAGCTCAGACGTGTAGACCCATCAATGGACCAGTTGGGCACCAGCCTTATTACGGAATGCATGCATACCGTGAAGCCCAGGTTCACAGTTCGGTTGCACCTTACACCACAGAGGGAATTCAAGTGATGCAGACAAGTGTTGCGATGAATGAGTCTGGCTACACTCAGGTTGCGTATGACAACACCGGCAGACATGTTTACTTTACCACCGCGCCGCCTTATCAGACCATGGCTCCGGTGGGGGTTGATCATGGGAGACCTACTACCAGTGGTGCAGGCTCCTATAATCCGGAGGGTAATGTGATTAACGCTTCCAAGGCCTCTGGTTTGTGA

Protein sequence

MENYSYSYADSRDSSPRSSDNPSWDETPSNLNAVNNYKVKFMCSYGGKIQPRAHDNQLTYTGGDTKILAVDRIISFSALSSRLSALCNVTVCFKYQLPGEDLDALISVTNDEDLEHMMLEYDRLHRVSKPARMRLFLFPLNPSPSTILDSRDSKSDRQWFVDALNSVRIQSLEDSSPPVDVSGSVSNPDFLFGFDKGYHPPPVSCSNLTDSAAVHNVSNMAVKDISAGSDCGSDDRHVVGEPVVSPSEFQRQIQDLQQVITERSSNETDSKSSASDPHPPMVAEKIAPPPTAVPLSVPLAVPAAYFPERQVISGGYPVAASANAPSTDQSIYLIPTAGGLFQAQTCRPINGPVGHQPYYGMHAYREAQVHSSVAPYTTEGIQVMQTSVAMNESGYTQVAYDNTGRHVYFTTAPPYQTMAPVGVDHGRPTTSGAGSYNPEGNVINASKASGL
Homology
BLAST of CmaCh05G005620 vs. TAIR 10
Match: AT5G64430.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 214.9 bits (546), Expect = 1.3e-55
Identity = 188/492 (38.21%), Postives = 236/492 (47.97%), Query Frame = 0

Query: 1   MENYSY-SYADSRDSSPRSS----DN--PSWDETPSNLNAVNNYKVKFMCSYGGKIQPRA 60
           ME +SY SY DS DSSPRS     DN  P WD+   N    ++YKVKFMCSYGGKIQPR 
Sbjct: 1   MEKFSYNSYPDSTDSSPRSREIEFDNPPPPWDDQNQN-QQQHSYKVKFMCSYGGKIQPRP 60

Query: 61  HDNQLTYTGGDTKILAVDRIISFSALSSRLSALC------NVTVCFKYQLPGEDLDALIS 120
           HDNQLTY  G+TKIL+VDR I F  L+S+LS +C         V FKYQLPGEDLDALIS
Sbjct: 61  HDNQLTYVNGETKILSVDRGIRFPVLASKLSTVCGGGDGGGGEVTFKYQLPGEDLDALIS 120

Query: 121 VTNDEDLEHMMLEYDRLHRV-SKPARMRLFLFPLNPSPSTILDSRDSKSDRQWFVDALNS 180
           VTND+DLEHMM EYDRL R+ SKPARMRLFLF   P+ S       ++SDR  FV+ALN+
Sbjct: 121 VTNDDDLEHMMHEYDRLLRLSSKPARMRLFLF---PASSGFGSQSSTQSDRDRFVEALNT 180

Query: 181 VRIQSLEDSSPPVDVSGSVSNPDFLFGFDKGYHPPPVSCSNLTDSAAVHNVSNMAVKDIS 240
           V   S  + S    V+   +N DFLFG +K   PPP   + +     V           +
Sbjct: 181 VPRLSESEKS----VTAPPNNADFLFGSEKVAAPPPPPPAEVKLPVPV-----------A 240

Query: 241 AGSDCGSDDRHVVGEPVVSPSEFQRQIQDL-------------QQVITERSSNETDSKSS 300
                 +D R +  + VV+P E QRQ+Q+              Q+ +  R SNE     +
Sbjct: 241 LEPPLFNDPRVIQPDHVVNPMEIQRQMQEFQRMHIRDQEQQQQQEAVYRRKSNEDGLIET 300

Query: 301 ASDPHPPMVAEKIAPPP--TAVPLSVPLAVPAAYFPERQVISGGYPVAASANAPSTDQSI 360
                 P   +  APPP    +P + P A P   F +     G      +      +Q +
Sbjct: 301 GGGYFSPPYIQNPAPPPPQQTIPQTNPQAPPMTTFWQGNHNPGVVFPTTTHGLGLPEQPV 360

Query: 361 YLI--PTAGGLFQAQ-------TCRPI-NGPVGHQPYY------GMHAYREAQ------V 417
           Y+I  P+   ++ A          RPI  G V    YY          YRE         
Sbjct: 361 YMIPSPSPSPVYHAPPPPQPQGVIRPILTGQVNQGGYYPQVQRVASDTYREPHQSPYNVA 420

BLAST of CmaCh05G005620 vs. TAIR 10
Match: AT5G09620.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 204.9 bits (520), Expect = 1.4e-52
Identity = 133/268 (49.63%), Postives = 158/268 (58.96%), Query Frame = 0

Query: 1   MENYSY-SYADSRDSSPRSSDNPSWDETPSNLNAVNNYKVKFMCSYGGKIQPRAHDNQLT 60
           M+ +SY SY DS +SSPRS D    + +P       NYKVK MCSYGGKIQPR HDNQLT
Sbjct: 1   MDKFSYNSYPDSAESSPRSRDVEFENPSPWEDQQQQNYKVKLMCSYGGKIQPRPHDNQLT 60

Query: 61  YTGGDTKILAVDRIISFSALSSRLSALCN-----VTVCFKYQLPGEDLDALISVTNDEDL 120
           Y  GDTKI++VDR I F AL S+LSA+C+       + FKYQLPGEDLDALISVTNDEDL
Sbjct: 61  YVNGDTKIMSVDRGIRFPALVSKLSAVCSGGGDGGEISFKYQLPGEDLDALISVTNDEDL 120

Query: 121 EHMMLEYDRLHRVS-KPARMRLFLFPLNPSPSTILDSRDSKSDRQWFVDALNSVRIQSLE 180
           EHMM EYDRL R+S KPARMRLFLFP +P          +KSDR    D LN +  +   
Sbjct: 121 EHMMHEYDRLLRLSTKPARMRLFLFPSSPISGGFGSEGSTKSDR----DTLNPIPSRPES 180

Query: 181 DSSPPVDVSGSVSNPDFLFGFDK--GYHPPPVSCSNLTDSAAVHNVSNMAVKDISAGSDC 240
           + S    V+   +N DFLFG +K     P PV          V     M V         
Sbjct: 181 EKS----VTAPPNNADFLFGSEKVAPIPPSPVKVPQPVPEPVVLEPPQMFV--------- 240

Query: 241 GSDDRHVVGEPVVSPSEFQRQIQDLQQV 260
             D R +  E  V+P+E QRQIQ+ Q +
Sbjct: 241 --DQRMLQPEHGVNPAEIQRQIQEFQMI 249

BLAST of CmaCh05G005620 vs. TAIR 10
Match: AT2G01190.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 139.4 bits (350), Expect = 7.0e-33
Identity = 93/202 (46.04%), Postives = 121/202 (59.90%), Query Frame = 0

Query: 7   SYADSRDSSPRSSDNPSWDETPS--------NLNAVNNYKVKFMCSYGGKIQPRAHDNQL 66
           SY +S DSSPRS     WD+ P+          +AV++ K++FMCSYGG I PR HD  L
Sbjct: 36  SYPESLDSSPRSRTTDGWDDLPAPSGGGGGGGGSAVSS-KLRFMCSYGGHILPRPHDKSL 95

Query: 67  TYTGGDTKILAVDRIISFSALSSRLS--ALCNVTVCFKYQLPGEDLDALISVTNDEDLEH 126
            Y GGDT+I+ VDR  S  +L +RLS   L   +   KYQLP EDLD+LISVT DEDL++
Sbjct: 96  CYMGGDTRIVVVDRNSSLPSLIARLSNTLLDGRSFTLKYQLPSEDLDSLISVTTDEDLDN 155

Query: 127 MMLEYDRLHRVS---KPARMRLFLFPLNP----SPSTILDSRDSKSDRQWFVDALNSVRI 186
           M+ EYDR    S   KP+R+RLFLF   P    S   IL+S  +KSD  WF++ALNS  +
Sbjct: 156 MIEEYDRTISASNSTKPSRLRLFLFTSKPEATQSMGQILES-SAKSD-DWFLNALNSAGL 215

Query: 187 QSLEDSSPPVDVSGSVSNPDFL 192
            +   S    +V+  +   D L
Sbjct: 216 LNRGFSDSDTNVNRLLGLDDAL 234

BLAST of CmaCh05G005620 vs. TAIR 10
Match: AT4G05150.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 124.4 bits (311), Expect = 2.3e-28
Identity = 136/444 (30.63%), Postives = 195/444 (43.92%), Query Frame = 0

Query: 10  DSRDSSPRSSDNPSWDETPSNLNAVNNYKVKFMCSYGGKIQPRAHDNQLTYTGGDTKILA 69
           DS  SSPRS     +D  P         +V+FMC++GG+I PR  DNQL Y GGD +++A
Sbjct: 43  DSLASSPRS----EYDSQP---------RVRFMCTFGGRILPRPPDNQLCYVGGDNRMVA 102

Query: 70  VDRIISFSALSSRLSALCNVT-VCFKYQLPGEDLDALISVTNDEDLEHMMLEYDRLHRVS 129
           V R  +F++L S+L+ L   + +  KYQLP EDLDALISV+ DED+E+MM EYDR+ +  
Sbjct: 103 VHRHTTFASLLSKLAKLSGKSNISVKYQLPNEDLDALISVSTDEDVENMMDEYDRVAQNQ 162

Query: 130 KP--ARMRLFLFPLNPSPSTILDSR--------DSKSDR-QWFVDALN---SVRIQSLED 189
            P  +R+RLFLF  N +     DSR        DS  +R QWF+DALN   S    ++ +
Sbjct: 163 NPRASRLRLFLFTKNVAGEEDNDSRASSISSLLDSSVNREQWFLDALNLGSSAAATAVSN 222

Query: 190 SSP-------PVDVSGSVSN-PDFLFGFDKGYHPPPVSCSNLTDSAAVHNVSN-----MA 249
                       +VS  VS  PD+LFG D           N  ++A  H + +       
Sbjct: 223 GGSGRVFERVRSEVSSIVSEVPDYLFGLD-----------NFDETAPPHELRDRDPRAKI 282

Query: 250 VKDISAGSDCGSDDRHVVGEPVVSPSEFQRQIQDLQQVITERSSNETDSKSSASDPHPPM 309
            +++S  SD GS  R V       PS +              +S+    + S  +  PP+
Sbjct: 283 QREVSTLSDPGSPRRDV-------PSPY------------GSTSSAPVMRISTPELPPPV 342

Query: 310 VAEKIAPPPTAVPLSVPLAVPAAYFPERQVISGGYPVAAS-ANAPSTDQS---------- 369
             +  +P P + P S P        PE+ +     PV +    AP   Q           
Sbjct: 343 FIKPESPEPVSTPKSNPQ-------PEQVMQQSNLPVNSQWQYAPGPGQQVHYQGHTIHQ 402

Query: 370 --IYLIP-TAGGLFQAQTCRPINGPVGH-------------QPYYGMHAYREAQVHSSVA 396
             +Y +P +  G    Q    +  P  H             Q ++    Y + Q H    
Sbjct: 403 SPVYYVPGSVPGNHMVQQGNHMVQPGNHMVQPVQMPGQYLQQYHHVPMGYHQPQTHQMAG 436

BLAST of CmaCh05G005620 vs. TAIR 10
Match: AT3G18230.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-27
Identity = 76/172 (44.19%), Postives = 101/172 (58.72%), Query Frame = 0

Query: 13  DSSPRSSDNPSWDETPSNLNAVNNYKVKFMCSYGGKIQPRAHDNQLTYTGGDTKILAVDR 72
           D SPR+    +    P  L AV   K++ MCS+GG I PR HD  LTY+GG+T+I+ VDR
Sbjct: 39  DGSPRAVATDT-GGIPEPLAAVPGAKLRLMCSFGGHIMPRPHDKSLTYSGGETRIVVVDR 98

Query: 73  IISFSALSSRLSA--LCNVTVCFKYQLPGEDLDALISVTNDEDLEHMMLEYDRL---HRV 132
             S S+L SRLS+  L   +   KYQLP EDLD+L+++T DEDLE+M+ EYDR       
Sbjct: 99  RASLSSLRSRLSSMLLNGRSFTLKYQLPSEDLDSLVTITTDEDLENMIEEYDRAASSATA 158

Query: 133 SKPARMRLFLFPLNPSPSTILDS-RDSKSDRQWFVDALNSVRI--QSLEDSS 177
           +   R+RLFLF      +  + S  D      WFVDALN   +  + L DS+
Sbjct: 159 TATQRLRLFLFANKLETAATMGSLLDGTKSDTWFVDALNQSGLLPRGLSDSA 209

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G64430.11.3e-5538.21Octicosapeptide/Phox/Bem1p family protein [more]
AT5G09620.11.4e-5249.63Octicosapeptide/Phox/Bem1p family protein [more]
AT2G01190.17.0e-3346.04Octicosapeptide/Phox/Bem1p family protein [more]
AT4G05150.12.3e-2830.63Octicosapeptide/Phox/Bem1p family protein [more]
AT3G18230.11.5e-2744.19Octicosapeptide/Phox/Bem1p family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000270PB1 domainSMARTSM00666PB1_newcoord: 53..140
e-value: 1.2E-26
score: 104.5
IPR000270PB1 domainPFAMPF00564PB1coord: 55..139
e-value: 1.4E-16
score: 60.2
NoneNo IPR availableGENE3D3.10.20.90coord: 58..139
e-value: 5.8E-9
score: 38.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 430..451
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 427..451
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..287
NoneNo IPR availablePANTHERPTHR31066OS05G0427100 PROTEIN-RELATEDcoord: 1..421
NoneNo IPR availablePANTHERPTHR31066:SF2OCTICOSAPEPTIDE/PHOX/BEM1Pcoord: 1..421
NoneNo IPR availableCDDcd06410PB1_UP2coord: 42..138
e-value: 2.95464E-47
score: 155.841
NoneNo IPR availableSUPERFAMILY54277CAD & PB1 domainscoord: 54..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G005620.1CmaCh05G005620.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding