CmaCh05G005570 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G005570
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr05: 2731432 .. 2735565 (+)
RNA-Seq ExpressionCmaCh05G005570
SyntenyCmaCh05G005570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGTCGGCCTACCAAGTTCTTCATCAGATGGGAAAGAACTAGGAAGACGATCCTCGTAGCTTTCTAGCAAAGGAACAATCGTCTTTGAAGATCGTACGGAGCTTGTTCACGCCAGAGCATGGAGCTTGAGGTGTCTGGATCGAACTCGGATTTTGTCGACAATAATAAGAGGAAGAATTTGGAGGGCTCGACTGGTGATCGGATTCGCCTGAAGAAGAAGACTCTGCAGGCTGTGCTGGAGCAGTGTCAGAGATCTCTCGAATCGCTGAACGATTCCAGCGGTGTCGATGAAAACGAGGGGGATGAATATGAAGATGAAAGGCACGGTGAGGTTTCGGAATCTGTGCGGGGTGATCGAGAAGCCGACGAGGTACGGGGGTTTCCTATGGATCCAAAATTTTGTAGTTTCGGGGATTTTAACTGAGAATTATTTTATTGTATCTGAGTTAGGGTTATTTAGCACGATGATTACGGGTTGCCGTGTGAGGTTTTTAGCTGGAAATTCTTTGCTGAAAGTTGGCTTGATTTCTACTGTTTCTGATTTAGAACTTAGAATAATGACTTTGAAGATGCTATATGAGTGAGTTCTAAATAATGACTTAGAATAATTCTGTGCATTTTTCTAAATATGACTTTGTTTTGTACTGATATGTGAGATTGAATACCAGATGAGATGAACGACTTATGATTTTGATGTATTAGCGTATGGTCGTTTCTCATCTGCTGGAATCGAAGTTCTTTCTATGGATGCTTCACAACTCAATGGGTACTTTTTTCTGGTTCAGCTTGAGGATGCTCTACTCTACTGTTATACAGTGATGGGTATAGGTGTAAGATTGATTTGAAGTTGCCTATAAGGATTGGTTTTGAAGTTGCCTATAATGATTGGTTTGAAGTTGTCTGGAAGCAATTCATCGTGGAAATTGTTTTATGTTCGTCGTTCTTTCAGGATCTGTTTGTTTATTCTTTCATTGAAGTCTCTTATGCATGTAATGGGCATCAGCGAGCACTGTTCGTGGGCGTGGTCAAGTTGATGGGAAATTTGTTTTCATTTTTTTGGGAAGTGTAATTGGCGCAACTCAATTAGGTAGAGAAAATGTGAAATACAACTTCTTTAGGTGTTTTTCGAGGATGTTTGAATCACGTGCCAATTCAAGTAATATATGTAACAGCTCAAGCTCACTGCTAGCAGATATTGTTATCTTTGGGGTTTCTCTTCTAGGCTTTCCCTCAGGGTTTTAAAATGCATTTACTGGGGAGAGGTTTCTACATCTTTACAAGGAATGTTTCGTTCACCAATATGAGATTTCACAATAACATTCATTTGGAGAAAATGTGAAAACAACCTCTTAATGCCTTTTTCCTGCAAAGTGAAAGCTAGGATCCTCCATCCATTCATTTTCAGTCTTTCTAAGAAATGGGATTTTCATTGAAAAAGATTGAAGTACAAGAACAATTGCGAAGAACACTTCCCTTTTCCCTTAAATACCACCTACATAAAACTTCATGGATAAGCCCTCCAGTTGCAAGTAATCAAAAGGAGGGGTACTCTAAAACTTAGCTGTTAGTATTAGCTACCTGATAAATCCTTGGATGGAGTTGGATGTCTGAAATTCTTTTTATATGGGTTTCATGCTGTTTATATTGTAATTTGGTGCCAATTTGACTTTAAATTTCATGATCCATGGCATTGACTTGAAGACATCTTTCTGCAGTTGTGTGATCTACTTAAATCTAAAGTTGAGTGCCGTGACTTTCTTGAAAAGCTAGAGGATGCTCGAGCATCAGTTCCGCCAAACACTTTTGGTATATCTCCATAACTTAACCAGGCTTTATTAAGGAATTGCAAACAGATTGTAGTTCGTGCATGTGAAGATAGAAATTTAGAATTTACAGGACCATCTCATTCATTTGAGATGAAAATATTGTTTTATTTATGGCATGATTGGCGAATGTTTATTATTCATTTCATTTTATTTTTATTACTTCTCTTTGTAATGGTAGAAGAATGCAGTTCTTGGGACGTGGTCAGTGATATGGATCTATGGGAAAGTGGTGATGCTCTAGATCAAGAAGGATACATCGTTGTGAAGCAAGAGGATATAGTCGATGGCATTGCTTGTTTCATGGCTGCTTACTTATTGTCCTTAAAGGAAACCAAGGTATACTCACATGGCTCTCTCTCTCACACACATACATATGTGCTGTAAATACCAAAAATTGGGTGTTGGTAGTTTTAAGTGTCTTGGTTTACAATACCCCAAGATAAGTATATAATGGTTAAAGTTTGAGAAATTATAATTCTCTCATCCAGTTTCTGTAAATACCAAAAAGAACCCAACCTGGGGCTCAAGTCAAGTCTCCTTGGATCTCACATCAGAAAGAGCTCTCTCAATGTTTGGTGGAGTAACTTAATGTTGAATTGAGGATCTAACATTCTCGAACTCAGGCCTCAAGTCCATAAAAAACTTAGAGAGCCCCTTTACTCTATATTCTTTCAGGCTATTCTATGTTAGATGAAATTTTTCCCAACAAAAGCTTTTAGAATTTGAATCGATCGGTGCCCCTATCTTTGAAAGGAGTACCTCATGTTTAGCTGGTCCCATAGAAGCCTAAGCCTTCGGTAATAAATAGTATAGCACATTGATTTCCTGATTTGACCCCTAATTTCACACTATGCTGTGGGCTGTGGCAACTGGCCATTTATCTTTCATATCTATCTGGTCTTAGAAGAAGCATTATTTCTATGAGCTATGTGCCTACAATCAACCTTTTGATTGGATCTCATTGTTTTGCAGGAATTGTCACCTAACCAACTTCAGAATGGTGAGTCTTGCCGCACTTTCTTGTTGAGAGGATGTTTTTAGATTTCAGTAGATCCCAATCAATGTTGCAAAGCTCTGTAATGTGGGCTTGTCACCCAAATAAAGGCATTGAATTTCAATTGGAAGCTGGTTCAACCCATCAACCCCACCTTCTCCAAGTAGATCCCGATCAATGTTGTGGATGAATATGTTCCGAGGGTCTATGTTGAATTTTTTTAAAAAAATTTACACACTTTTCATATTGGAATTTAGACTACACTTCAAGCAATTTGGTTCTGGTCTGATTATATTTGAATCTCATGCAGCCCTTTGCAAAACATTCTCAGTGAAGAAAAGAAAAGGCAAACTCCGGAAGGCGTGGGATGGAAGCAAGGTCATTTATAATGTGGCATCCTGGGGAGCTACTGCGGTTGGGTATGTTAATCAACTGGTTTGACTGAATAATATCATATAAAAAAGTTATTGCATTTACCATTCGATTACTCTTTATTGTATGGACCACTAAGACAATTAAAACTGGCGTTGCTTGATGTGCTCCCTTAAAGTGTTCCTGTTTTTTTTCCCAAGGACAAACAAACGAATATGAGGTATAGAAATTTGAACCTCTGGCTTCAAAAGGAGTAGATATTGGTCATATCCAATATTGTTTTTCTGCGATGGTGCTGTTCTTTTAGTATAACCTGGACGAGCGTCAAGAGCTGCCCGTATGCTGTCGCAATTCGATGCCACCAGTTGAACTATATAACATTGTCCTTAAATTTCATGTTTCACATATTCATGTTCATACTAAAGGATTTTTGTTTATTTGTTTTTCCTTGTATTTACATCACTATAGAGAATCTGTATGCATATTAGCTTTAACATTTGAATTCCTTCCTTTGAAACGGGAAAAGGCAATATATTTCTCTTCTTCTGATACTTCCTGCAACTGATATGCACAGGCTATACCAGAACCCTGTGATTCTAAGTGCTGCTTCTAAAGCCTTCTGGACTTCCTGCCAAGTAATATCAAAGCTTCTCTAACATACCTTCTTATGTAAATATGCTCTGCTCAAGTGCAGTATCCGAAAGAAAATTTGTTGTTCTTTAGGCTTATTCTTGCATGCCCAGATTGATTAGTTCCTTGAAGAATACACTCTTGTAGATATCTTTTCTTTTCTGCTAGGATCTTGTTATTATTTGAGGAGATTTCTGTATCTATGCCAAAAACTATTATTTGTAGCTTGTTCCCACATGGAAACAAGCACTGCAACTTATGCAATATTGTTGATAGAGATTTATGTTTCCCAAATTGAGATTGTCCTGTGC

mRNA sequence

TCTGTCGGCCTACCAAGTTCTTCATCAGATGGGAAAGAACTAGGAAGACGATCCTCGTAGCTTTCTAGCAAAGGAACAATCGTCTTTGAAGATCGTACGGAGCTTGTTCACGCCAGAGCATGGAGCTTGAGGTGTCTGGATCGAACTCGGATTTTGTCGACAATAATAAGAGGAAGAATTTGGAGGGCTCGACTGGTGATCGGATTCGCCTGAAGAAGAAGACTCTGCAGGCTGTGCTGGAGCAGTGTCAGAGATCTCTCGAATCGCTGAACGATTCCAGCGGTGTCGATGAAAACGAGGGGGATGAATATGAAGATGAAAGGCACGGTGAGGTTTCGGAATCTGTGCGGGGTGATCGAGAAGCCGACGAGTTGTGTGATCTACTTAAATCTAAAGTTGAGTGCCGTGACTTTCTTGAAAAGCTAGAGGATGCTCGAGCATCAGTTCCGCCAAACACTTTTGAAGAATGCAGTTCTTGGGACGTGGTCAGTGATATGGATCTATGGGAAAGTGGTGATGCTCTAGATCAAGAAGGATACATCGTTGTGAAGCAAGAGGATATAGTCGATGGCATTGCTTGTTTCATGGCTGCTTACTTATTGTCCTTAAAGGAAACCAAGGAATTGTCACCTAACCAACTTCAGAATGCCCTTTGCAAAACATTCTCAGTGAAGAAAAGAAAAGGCAAACTCCGGAAGGCGTGGGATGGAAGCAAGGTCATTTATAATGTGGCATCCTGGGGAGCTACTGCGGTTGGGCTATACCAGAACCCTGTGATTCTAAGTGCTGCTTCTAAAGCCTTCTGGACTTCCTGCCAAGTAATATCAAAGCTTCTCTAACATACCTTCTTATGTAAATATGCTCTGCTCAAGTGCAGTATCCGAAAGAAAATTTGTTGTTCTTTAGGCTTATTCTTGCATGCCCAGATTGATTAGTTCCTTGAAGAATACACTCTTGTAGATATCTTTTCTTTTCTGCTAGGATCTTGTTATTATTTGAGGAGATTTCTGTATCTATGCCAAAAACTATTATTTGTAGCTTGTTCCCACATGGAAACAAGCACTGCAACTTATGCAATATTGTTGATAGAGATTTATGTTTCCCAAATTGAGATTGTCCTGTGC

Coding sequence (CDS)

ATGGAGCTTGAGGTGTCTGGATCGAACTCGGATTTTGTCGACAATAATAAGAGGAAGAATTTGGAGGGCTCGACTGGTGATCGGATTCGCCTGAAGAAGAAGACTCTGCAGGCTGTGCTGGAGCAGTGTCAGAGATCTCTCGAATCGCTGAACGATTCCAGCGGTGTCGATGAAAACGAGGGGGATGAATATGAAGATGAAAGGCACGGTGAGGTTTCGGAATCTGTGCGGGGTGATCGAGAAGCCGACGAGTTGTGTGATCTACTTAAATCTAAAGTTGAGTGCCGTGACTTTCTTGAAAAGCTAGAGGATGCTCGAGCATCAGTTCCGCCAAACACTTTTGAAGAATGCAGTTCTTGGGACGTGGTCAGTGATATGGATCTATGGGAAAGTGGTGATGCTCTAGATCAAGAAGGATACATCGTTGTGAAGCAAGAGGATATAGTCGATGGCATTGCTTGTTTCATGGCTGCTTACTTATTGTCCTTAAAGGAAACCAAGGAATTGTCACCTAACCAACTTCAGAATGCCCTTTGCAAAACATTCTCAGTGAAGAAAAGAAAAGGCAAACTCCGGAAGGCGTGGGATGGAAGCAAGGTCATTTATAATGTGGCATCCTGGGGAGCTACTGCGGTTGGGCTATACCAGAACCCTGTGATTCTAAGTGCTGCTTCTAAAGCCTTCTGGACTTCCTGCCAAGTAATATCAAAGCTTCTCTAA

Protein sequence

MELEVSGSNSDFVDNNKRKNLEGSTGDRIRLKKKTLQAVLEQCQRSLESLNDSSGVDENEGDEYEDERHGEVSESVRGDREADELCDLLKSKVECRDFLEKLEDARASVPPNTFEECSSWDVVSDMDLWESGDALDQEGYIVVKQEDIVDGIACFMAAYLLSLKETKELSPNQLQNALCKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGLYQNPVILSAASKAFWTSCQVISKLL
Homology
[Close]
BLAST of CmaCh05G005570 vs. TAIR 10
Match: AT5G49710.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 253.1 bits (645), Expect = 2.3e-67
Identity = 137/235 (58.30%), Postives = 169/235 (71.91%), Query Frame = 0 

Query: 13  VDNNKRKNLEGSTGDRIRLKKKTLQAVLEQCQRSLESLNDSSGVDENEGDEY-------E 72
           +DNN  +  +    D IR+K+KTLQA+L  CQR+LE LN +    E++ D+         
Sbjct: 1   MDNNSERKGKRIDKDNIRVKRKTLQALLNDCQRALELLNLAEVSSEDDEDDKSTGEGSGS 60

Query: 73  DERHGEVSESVRGDREADELCDLLKSKVECRDFLEKLEDARASVPPNTFEECSSWDVVSD 132
            E  GEVS S R D EADEL DL+KS+VEC DFLEK+E A+ S P +  E+ SSWDVVS+
Sbjct: 61  QESRGEVSSSDREDPEADELYDLIKSRVECDDFLEKIESAQVSAPQHLAEDSSSWDVVSE 120

Query: 133 MDLWESGD-ALDQEGYIVVKQEDIVDGIACFMAAYLLSLKETKELSPNQLQNALCKTFSV 192
            DLW+    A  +E Y++V++EDI +GIACFMA YL SLK+TK+L+P QLQ AL + FSV
Sbjct: 121 DDLWDDETMAQREEDYVLVREEDIAEGIACFMATYLQSLKQTKDLTPEQLQKALSRMFSV 180

Query: 193 KKRKGKLRKAWDGSKVIYNVASWGATAVGLYQNPVILSAASKAFWTSCQVISKLL 240
           K RKGKLRKAWDGSKV YNVASW AT +G+YQNPVIL  ASKAFW SC VISKL+
Sbjct: 181 KNRKGKLRKAWDGSKVAYNVASWSATVIGIYQNPVILRVASKAFWASCHVISKLV 235

[Close]
BLAST of CmaCh05G005570 vs. TAIR 10
Match: AT4G24590.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49710.3); Has 105 Blast hits to 105 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 3; Plants - 85; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 249.2 bits (635), Expect = 3.3e-66
Identity = 143/246 (58.13%), Postives = 175/246 (71.14%), Query Frame = 0 

Query: 1   MELEVSGSNSDFVDNNKRKNLEGSTGDRIRLKKKTLQAVLEQCQRSLESL---NDSSGVD 60
           ME+EVS S  D      R +L     D IR+K+KTLQ +L  CQR+LE L    D +G +
Sbjct: 1   MEIEVSCSTHDAETKGNRIDL-----DSIRVKRKTLQNLLADCQRALELLELPGDENGGE 60

Query: 61  ENEGDEYEDERHG---EVSESVRGDREADELCDLLKSKVECRDFLEKLEDARASVPPNTF 120
           ++E  E E+E      E S S  GD EAD+  DL+KS+VEC DF EK+E A+ SVP    
Sbjct: 61  QSESPEEEEEEESDREEPSASDPGDPEADKFYDLIKSRVECNDFREKIELAQVSVPQVLA 120

Query: 121 EECSSWDVVSDMDLW-ESGDALDQEGYIVVKQEDIVDGIACFMAAYLLSLKETKELSPNQ 180
           E+ SSWDVVS+ DLW E      ++ Y+VV++EDI DGIACFMA YL SLK+TK++SP+Q
Sbjct: 121 EDSSSWDVVSEDDLWDEECVGQTEDDYVVVREEDIADGIACFMATYLSSLKQTKDISPDQ 180

Query: 181 LQNALCKTFSVKKRKGKLRKAWDGSKVIYNVASWGATAVGLYQNPVILSAASKAFWTSCQ 240
           LQ AL   FSVKKRKGKLRKAW+GSKVIYNVASW ATA+G+YQNP+ILS ASKAFW SCQ
Sbjct: 181 LQKALSTMFSVKKRKGKLRKAWEGSKVIYNVASWSATAIGIYQNPMILSIASKAFWMSCQ 240

[Close]
BLAST of CmaCh05G005570 vs. TAIR 10
Match: AT5G49710.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 247.3 bits (630), Expect = 1.3e-65
Identity = 136/235 (57.87%), Postives = 168/235 (71.49%), Query Frame = 0 

Query: 13  VDNNKRKNLEGSTGDRIRLKKKTLQAVLEQCQRSLESLNDSSGVDENEGDEY-------E 72
           +DNN  +  +    D IR+K+KTLQA+L  CQR+LE LN +    E++ D+         
Sbjct: 1   MDNNSERKGKRIDKDNIRVKRKTLQALLNDCQRALELLNLAEVSSEDDEDDKSTGEGSGS 60

Query: 73  DERHGEVSESVRGDREADELCDLLKSKVECRDFLEKLEDARASVPPNTFEECSSWDVVSD 132
            E  GEVS S R D EADEL DL+KS+VEC DFLEK+E A+ S P +   + SSWDVVS+
Sbjct: 61  QESRGEVSSSDREDPEADELYDLIKSRVECDDFLEKIESAQVSAPQH-LADSSSWDVVSE 120

Query: 133 MDLWESGD-ALDQEGYIVVKQEDIVDGIACFMAAYLLSLKETKELSPNQLQNALCKTFSV 192
            DLW+    A  +E Y++V++EDI +GIACFMA YL SLK+TK+L+P QLQ AL + FSV
Sbjct: 121 DDLWDDETMAQREEDYVLVREEDIAEGIACFMATYLQSLKQTKDLTPEQLQKALSRMFSV 180

Query: 193 KKRKGKLRKAWDGSKVIYNVASWGATAVGLYQNPVILSAASKAFWTSCQVISKLL 240
           K RKGKLRKAWDGSKV YNVASW AT +G+YQNPVIL  ASKAFW SC VISKL+
Sbjct: 181 KNRKGKLRKAWDGSKVAYNVASWSATVIGIYQNPVILRVASKAFWASCHVISKLV 234

[Close]
BLAST of CmaCh05G005570 vs. TAIR 10
Match: AT5G49710.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 155.6 bits (392), Expect = 5.0e-38
Identity = 88/174 (50.57%), Postives = 117/174 (67.24%), Query Frame = 0 

Query: 13  VDNNKRKNLEGSTGDRIRLKKKTLQAVLEQCQRSLESLNDSSGVDENEGDEY-------E 72
           +DNN  +  +    D IR+K+KTLQA+L  CQR+LE LN +    E++ D+         
Sbjct: 1   MDNNSERKGKRIDKDNIRVKRKTLQALLNDCQRALELLNLAEVSSEDDEDDKSTGEGSGS 60

Query: 73  DERHGEVSESVRGDREADELCDLLKSKVECRDFLEKLEDARASVPPNTFEECSSWDVVSD 132
            E  GEVS S R D EADEL DL+KS+VEC DFLEK+E A+ S P +  E+ SSWDVVS+
Sbjct: 61  QESRGEVSSSDREDPEADELYDLIKSRVECDDFLEKIESAQVSAPQHLAEDSSSWDVVSE 120

Query: 133 MDLWESGD-ALDQEGYIVVKQEDIVDGIACFMAAYLLSLKETKELSPNQLQNAL 179
            DLW+    A  +E Y++V++EDI +GIACFMA YL SLK+TK+L+P QLQ  +
Sbjct: 121 DDLWDDETMAQREEDYVLVREEDIAEGIACFMATYLQSLKQTKDLTPEQLQKGI 174

[Close]
BLAST of CmaCh05G005570 vs. TAIR 10
Match: AT1G44770.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49710.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-14
Identity = 51/177 (28.81%), Postives = 83/177 (46.89%), Query Frame = 0 

Query: 89  LKSKVECRDFLEKLEDARASVPPNT-----------------------FEECSSWDVVSD 148
           L + V  RDFL +LE+ R ++   T                        +E S W +V+D
Sbjct: 94  LVTMVTSRDFLARLENLRQALSNGTQNQFPFKEPTDDVKTVEVLIEMDHQEPSWWVLVTD 153

Query: 149 ---MDLWESGDALDQEGYIVVKQEDIVDGIACFMAAYLLSLKETKELSPNQLQNALCKTF 208
                  E   A+D E YIVV +E ++D +A F+A  ++S  + K L P +LQ  L +  
Sbjct: 154 DMVPSNVEEQSAIDNEHYIVVNEEHVIDAVAHFLAKCIMSNPKAKNLKPEELQKLLVQEV 213

Query: 209 SVKKRKGKLRKAWDGSKVIYNVASWGATAVGLYQNPVILSAASKAFWTSCQVISKLL 240
           +   + GK+   W   K+ Y +++WG    GLYQ   +L  A+K    + +V+ + L
Sbjct: 214 TALSKVGKVVDIWHAGKMFYTLSTWGLAFGGLYQARGVLKIAAKGVHATSKVVLRAL 270

The following BLAST results are available for this feature:
BLAST of CmaCh05G005570 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh05G005570 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G49710.32.3e-6758.30unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G24590.13.3e-6658.13unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G49710.11.3e-6557.87unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G49710.25.0e-3850.57unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G44770.22.9e-1428.81unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 33..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..77
NoneNo IPR availablePANTHERPTHR33874RING FINGER PROTEINcoord: 1..239
NoneNo IPR availablePANTHERPTHR33874:SF1RING FINGER PROTEINcoord: 1..239

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G005570.1CmaCh05G005570.1mRNA