CmaCh05G005490 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G005490
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Carbonic anhydrase
Location	Cma_Chr05: 2683231 .. 2685736 (+)
RNA-Seq Expression	CmaCh05G005490
Synteny	CmaCh05G005490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACAGAGTTTGATCATTTTCATTTAATTCACTTGATTTCAGAATCAATCTCCATGAATTTCTTTGCTGATTTATCGTTGCTAATAGGCCTAAGAGCATGCTGGGGTCGGCTAGTTTCAGAAATGGCTGCGATTGGACCCACTCTAATCCACAAGAACCCTTCCCTTTTCTCATCATTTTCAGTTGGGAGAAATTCTATTTCTGTGAGTTCTTCCACTTTCTGTTTCTTTATTTTGCTGTAATTTTAGGTTTAGATTGGGTTTTAATTTGATGGAATTCGGAAGCAATCGACGAAACTCATCCGTAAGTGCCTTGTTATCGCATTCACGAGTGGGTATTTCCTTCATGTGACTAATTTACTGTATGAATGTTTAATAGAAAATCCGATCAATTTTCACTTCTGGATTCTTATTTTTACTTTCTGATAAGGTTGGAAGTCTCGAGTAGCTCATCAGGTGTGGAATTGAAAAATGTGGCTAAAGTGAAGGATGCAGATAAGGTGTTCGATGAAATGACAAGAAGATTTCTGAGTTTTAAGAAGCAAAAGTTTTTGTGAGTACCAATTGGGGATTGGTTTTTGATCCAAGGGTTTCTTATGAATTTGCAGTGAACACATTAAAAGTAGGCTATGTTCCGTTCTTCTTGCTGTCAAATTTGATCTTTATCATCTCTAGACTTCGTATTCTTCTCATTAGAGAGTGCATTTATTGGATGAATTCTTAAGAGAACTTAGTTTTATGCTCAAAGTTGAGAACACTTTAGTCATTGGCCACAGTATTTGTGCTGAATTCACAGTCTTGTGAGCATGGAAGATAATGCTATCAACTCGAGGTTCCACTTTCTTCAACTCTCTTGTATCTTGTATCTTATATCTAACTGTCTAAGCCCTCCGCTAGCGGATATTGTACTCTTTTTGGACTTTCTCTCAAGGTTTTTAAAACGCGTATGCTAGGAAGAGGTTTCTACACTCATATAAACAATGCTTCTTTCTGTTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTCGAGGCCCAGCGTTCTCGCTGACACTCGTTTCCTTCTCCAATCCACGTGGAATCCCCCAAATCCACCTCCTTTGAGGCCCAACGTCTTTGTTGGCACACTGCCTTGTGTTCACCCCTCTTCGGGGCTCAGCCTCTTCGCTGGCTCATCGTTCGGTATCCACCCCCTTCGGGGCTCAGCGTCCTCGCTGGCACACCTCCCGGTGTCTGGCTCTGATATCATTTGTAACGGTTCAAGTCCTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACTTGTATGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCATTTTCCTCCCCAACCGACGTGTGATCTCACATTATACATCTGTTTTCTGGTATTTGTTCGTTTTTCGAGCGGTAACTTGTAGCTTATTCTGCTATGGTAGCTTTGTTCGTAAGTGGGTGGTGAACGCAAAGGCTGCTAAGTTAAGAACAAAAGCTGCTGCTGAACATCTTAGTTTTGACCAGCAATGTAAGCATTGTGAGAAGGTACTGATATACTTTTGCTGCAAACATGAACCACACGATCTTTGTTTCAATTTCATTCATCTTCCCCAGTTCATTTTTTAGATTAGAATCTGTTTCTTTCTTTATTAATTCATATGCAAAGTTGCGAGATCCCACCTTAGTAAAAGAGGGGAACGAAACATTCCTTATAAGGGTGTGAAAATCTCTTTCTAGCAAAGCGTTTTAAAAACTGTGAGCCTGACGGCAATACGTAACGAGCCAAAGCGGACAATATCTGCTAGCGGTGGGCTTGAACTGCTACAAATGGTACAGAGTCAGCCACTTAGCGGTGTGTCAGCGAGGACGCTGGTCCCCAAAAGAGTGGATTGTGATTTGTAAGATCCTACATCAGCTGGAGGGGAAGGAAACATTTCTTATAAGGGTGTGAAAACCTCATCCTAATATATGCGTTTTGAAAACCGCGAGACTGACGGCGATACGTAATAGGTCAAAACGGATAATACAAACAATATCTACTAGCGGTGGCTTAGCTGTTAGAAAAGTTCAAACTATCCATCTACCTATCCAAGTTCTTGCTATGCTAGGTTGTTGAGTTAGTTTAGGACTGATTCATAGTAAAAGGCCGGGAGGGAATGGTTTCTCAAGTCATAGTGACCTCTTAACTAGAACTTCATGTTCTACAAGTTTTCTTAACAAATAATCTGAGTGTAGTAGGGTTAGTTAGTTGTCTGGTGCAAGCTGACTCGAAAGATTACTAATCTCTACACTTCCATTTTTGCCACCAAGAGTCGATCGACCGTTCGTTGAAGAACTTGATGACGTACCCAGCCGTTAAAAGAGGAGGTTCTTTCTATTCATGGAGGACACTACAATTTCTGGTCATGTACATTTGAGAAGTAGACGCTTGATTACAAGAACACGAACAAAGCTGATGATGATGATCGTGGATGTCTGATCAAAGATCAATCAATCTGA

mRNA sequence

CAACAGAGTTTGATCATTTTCATTTAATTCACTTGATTTCAGAATCAATCTCCATGAATTTCTTTGCTGATTTATCGTTGCTAATAGGCCTAAGAGCATGCTGGGGTCGGCTAGTTTCAGAAATGGCTGCGATTGGACCCACTCTAATCCACAAGAACCCTTCCCTTTTCTCATCATTTTCAGTTGGGAGAAATTCTATTTCTCAATCGACGAAACTCATCCGTAAGTGCCTTGTTATCGCATTCACGAGTGGGTTGGAAGTCTCGAGTAGCTCATCAGGTGTGGAATTGAAAAATGTGGCTAAAGTGAAGGATGCAGATAAGGTGTTCGATGAAATGACAAGAAGATTTCTGAGTTTTAAGAAGCAAAAGTTTTTCTTTGTTCGTAAGTGGGTGGTGAACGCAAAGGCTGCTAAGTTAAGAACAAAAGCTGCTGCTGAACATCTTAGTTTTGACCAGCAATGTAAGCATTGTGAGAAGACGCTTGATTACAAGAACACGAACAAAGCTGATGATGATGATCGTGGATGTCTGATCAAAGATCAATCAATCTGA

Coding sequence (CDS)

ATGAATTTCTTTGCTGATTTATCGTTGCTAATAGGCCTAAGAGCATGCTGGGGTCGGCTAGTTTCAGAAATGGCTGCGATTGGACCCACTCTAATCCACAAGAACCCTTCCCTTTTCTCATCATTTTCAGTTGGGAGAAATTCTATTTCTCAATCGACGAAACTCATCCGTAAGTGCCTTGTTATCGCATTCACGAGTGGGTTGGAAGTCTCGAGTAGCTCATCAGGTGTGGAATTGAAAAATGTGGCTAAAGTGAAGGATGCAGATAAGGTGTTCGATGAAATGACAAGAAGATTTCTGAGTTTTAAGAAGCAAAAGTTTTTCTTTGTTCGTAAGTGGGTGGTGAACGCAAAGGCTGCTAAGTTAAGAACAAAAGCTGCTGCTGAACATCTTAGTTTTGACCAGCAATGTAAGCATTGTGAGAAGACGCTTGATTACAAGAACACGAACAAAGCTGATGATGATGATCGTGGATGTCTGATCAAAGATCAATCAATCTGA

Protein sequence

MNFFADLSLLIGLRACWGRLVSEMAAIGPTLIHKNPSLFSSFSVGRNSISQSTKLIRKCLVIAFTSGLEVSSSSSGVELKNVAKVKDADKVFDEMTRRFLSFKKQKFFFVRKWVVNAKAAKLRTKAAAEHLSFDQQCKHCEKTLDYKNTNKADDDDRGCLIKDQSI

Homology

[Close]

BLAST of CmaCh05G005490 vs. ExPASy Swiss-Prot
Match: Q9C6F5 (Beta carbonic anhydrase 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=BCA6 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.6e-06
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 110 VRKWVVNAKAAKLRTKAAAEHLSFDQQCKHCEK 143
           V +WV+N KAAKLRT+ A+ HLSFD+QC++CEK
Sbjct: 196 VERWVMNGKAAKLRTQLASSHLSFDEQCRNCEK 228

[Close]

BLAST of CmaCh05G005490 vs. TAIR 10
Match: AT1G58180.1 (beta carbonic anhydrase 6 )

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-07
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 110 VRKWVVNAKAAKLRTKAAAEHLSFDQQCKHCEK 143
           V +WV+N KAAKLRT+ A+ HLSFD+QC++CEK
Sbjct: 196 VERWVMNGKAAKLRTQLASSHLSFDEQCRNCEK 228

[Close]

BLAST of CmaCh05G005490 vs. TAIR 10
Match: AT1G58180.2 (beta carbonic anhydrase 6 )

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-07
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 110 VRKWVVNAKAAKLRTKAAAEHLSFDQQCKHCEK 143
           V +WV+N KAAKLRT+ A+ HLSFD+QC++CEK
Sbjct: 196 VERWVMNGKAAKLRTQLASSHLSFDEQCRNCEK 228

[Close]

BLAST of CmaCh05G005490 vs. TAIR 10
Match: AT1G58180.3 (beta carbonic anhydrase 6 )

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-07
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 110 VRKWVVNAKAAKLRTKAAAEHLSFDQQCKHCEK 143
           V +WV+N KAAKLRT+ A+ HLSFD+QC++CEK
Sbjct: 145 VERWVMNGKAAKLRTQLASSHLSFDEQCRNCEK 177

[Close]

BLAST of CmaCh05G005490 vs. TAIR 10
Match: AT1G58180.4 (beta carbonic anhydrase 6 )

HSP 1 Score: 53.5 bits (127), Expect = 1.9e-07
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 110 VRKWVVNAKAAKLRTKAAAEHLSFDQQCKHCEK 143
           V +WV+N KAAKLRT+ A+ HLSFD+QC++CEK
Sbjct: 196 VERWVMNGKAAKLRTQLASSHLSFDEQCRNCEK 228

The following BLAST results are available for this feature:

BLAST of CmaCh05G005490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C6F5	2.6e-06	66.67	Beta carbonic anhydrase 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=BCA6...	[more]

BLAST of CmaCh05G005490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G58180.1	1.9e-07	66.67	beta carbonic anhydrase 6	[more]
AT1G58180.2	1.9e-07	66.67	beta carbonic anhydrase 6	[more]
AT1G58180.3	1.9e-07	66.67	beta carbonic anhydrase 6	[more]
AT1G58180.4	1.9e-07	66.67	beta carbonic anhydrase 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11002:SF19	CARBONIC ANHYDRASE	coord: 109..142
None	No IPR available	PANTHER	PTHR11002:SF19	CARBONIC ANHYDRASE	coord: 63..108
None	No IPR available	PANTHER	PTHR11002	CARBONIC ANHYDRASE	coord: 63..108
None	No IPR available	PANTHER	PTHR11002	CARBONIC ANHYDRASE	coord: 109..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G005490.1	CmaCh05G005490.1	mRNA