CmaCh05G005410 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G005410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribosomal RNA small subunit methyltransferase A
Location	Cma_Chr05: 2630325 .. 2633522 (-)
RNA-Seq Expression	CmaCh05G005410
Synteny	CmaCh05G005410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGCGGAGTGGGAAGCATAAAGAACCTCAAAGCTCTAATGGTGGTTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTTCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAACGGAAATGGCATAGTCGGGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCATGTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGCGATGATGACTCGGATAACAGTTTTGCAGTGCTGGTTCCATGTTATGCACGCATTTACAATGATTTTGTGGATGAAACTAAGATCAGTGTCCTAAGTGCTGTTGGGAACATCAGCGATAGCTTTTCTACTGGTAAGAGTTGTTTCTTCTCAAGCTTGCCTTTCGATTCGTGTTGCGTGTTAGTAATTGCTTTTGCCTCCCAAAATAATCTTCTAGTCCTCTTTCGTAAATAGTGAACTCAATAACTTCGTTCATTTCCTATGATAGCTTAATTTCATTGCCCACGATCGAACTTATAATGTAAATAATGTACATCAGGTCCGTATTCCAAACAAGAAAAAACTTTTATGTAATTTAATTGTTATCTCATATTCATAGACCCTTAATATTTTTAGGATGATTATACTATTTCCTTTTCTGAATCATGCTCGAGAGTCATTCTGAGACTTCATCTCTAAGAAATATTACTTGACTCATTCCCAATAGGATAATTATGCATTAGAAAGATATCGGCAAATCGAAGAACAACCGAAGGATCTATCTTTGTTTCCAAGAAAAGGGTGTCACCAGATCCTTGTTTGCATTTCTTGTAGCAGAGCTAACACAAATTTATGTACATTTATGTAGTAAAGTGATGAGTAAAGATCTCTTGAATGATTGCTACGATTTCTGGTGCAAGTAAAGAAACTCCAGACATGGAGGAGCCGTTAGTTAAAAGTGATTTTGATCATTGGAAACCAATCCAGTAGTTAAATCTATTCTCTATCTGTAAAACTGATTAAGCAAGTAGGCTTAGAGCTGATATAAGGACGAGTTTAGAATGATAGAATCAAACTCAACTTCTAGACTTCACCGAATTATATTCTAATTGCTTTTGGCCTCTGCAGCAATATTTACAGTTTCCTTGTTCTATTTTATTTCGTACTGACTTCATATGGTATGATTGTTCTCTGGCCAAATTGAATAATACTAAAATTAGTAGCGATATGTGTTAATTTCTTTTCGGTTGCTTTATGTTTCGTTGTAAGCTGATTATGTCTGCACTTTTCCATGAAGCAGAGAGCAAGAAATACATGGAACAGTGGCTGTCCTCTCTTCAGAACTGCTGATACACAGGATTTATAATGGTTGCACGCGGACGCTAATGCCTTGTTTCCAAGAAGAAAACAATTTGTGATCTTAAGCCATTTAAAAATTTAAAAAAAAAAAAGAAAAGAAAAAAAGAAAAAGATGATACAGGACTATCTATTCTGGCTTCGTTTGATTTACTGCTGGGAAGCAAATTGGATGAACAGATTGGATGCAACCAGTGGGTGAAGGTCTCATCTTTTCAAAAAAAAAATTGACCATGTTCTTAAGAAGAGAGAGGCCTAAATTATGACCTCATCTGTGTTGAAGCCTGTTAAAATGGGATGTAAATACTTTTAGAGACTCCTATATAAATATGGAAGGGAGACGAAGGCTGAGTCAACCAGCTGGGATTTGAAGAAAAAGAATATTAAGGAGTTGCAAGTGCAAATGTCTTGTTATTCTTTGAAGTTCAGTTCAGTTCAGTTCATGTATAAAGTGGGAAGGTGTTTAGTTTAGTTCATCTGAAAGTTGCTGTAAAAGTGACTCATTTATGTATGCATCATGTAAAAGTGGCCTTAGTTCATCTAAATATGGCTGTAAATGTTGACCCATTTGTAAAATTTGTTGTATAATGACACAGTTGTGCTGTCATGTAAATATTTCTCTCCCCATTCAATGTAATATTCTTTAGATATTTACAGCATTAAAGCCTATGAACACTACAAAGTTTCAGTGAATAATTGAACACTACAAAGTTTCAGTGAATAATTTATCTGTTAAATCTATTTAACATAGTAAAACTTAGACTCATATGTTTAAAGGCTATACTAGATTTAATTAGCCGGATAATAACAATCAAACTTGAAGAATATATTAGTTCTCATTTCTAAACTCTTAGTCGAGAATATATTTTTTTTCATTTTTAAACAGTTTAGTTGAGAATTCATGAAAAAAAAAAAAAAAAAAAAAAAAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTTTTTTTTTTTTTTTTTTTTTTGGGCAATGCATTTACAGTAAACGAGCGACAAAATAAACATACTGTTAGAGGGCTTGTAGCTAGATTTGAACAGAAGTCAAAGCAACGATACCAAGTTTTCCAATGTTAGTATATGAACAGGGAACCCCGAGTCCAGACCTTGACATGGATCAGTCAGGAGGCAGAAGAATTTTGAAGTCAGAAACGTAAATGAAACAGGGAATTTGAAGAACAAATCAAAATAAATACAGGTACAGAAGATGTTTCTGATTATATGTTGCTGTTCTTCCTTTCATTTCAGGTCAAATGGCTGCTGCTTCTCCGTGA

mRNA sequence

ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGCGGAGTGGGAAGCATAAAGAACCTCAAAGCTCTAATGGTGGTTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTTCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAACGGAAATGGCATAGTCGGGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCATGTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGCGATGATGACTCGGATAACAGTTTTGCAGTGCTGGTTCCATGTTATGCACGCATTTACAATGATTTTGTGGATGAAACTAAGATCAGTGTCCTAAGTGCTGTTGGGAACATCAGCGATAGCTTTTCTACTGGTCAAATGGCTGCTGCTTCTCCGTGA

Coding sequence (CDS)

ATGTCTGTGGCATTTCCCCAACTCTCGTGGTGGTTGCGGAGTGGGAAGCATAAAGAACCTCAAAGCTCTAATGGTGGTTCTGCTTTAAATGCTTCACTAGATACAGCCAACCGGGAAACAGATACTCTAAAATTTTCTTTAGTTAATGGGGCCAACATATCATCCTCGTCTAGAAGGGTGAAACGGAAATGGCATAGTCGGGAAGAGAGGAAAATTGATAGGGAATATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCATGTCAGGGTCTGAGTCTGATGACTCAGATTGGTCAATTGGATGGTCGGAACCCCATGGACCTGGATTCCAGAGCGATGATGACTCGGATAACAGTTTTGCAGTGCTGGTTCCATGTTATGCACGCATTTACAATGATTTTGTGGATGAAACTAAGATCAGTGTCCTAAGTGCTGTTGGGAACATCAGCGATAGCTTTTCTACTGGTCAAATGGCTGCTGCTTCTCCGTGA

Protein sequence

MSVAFPQLSWWLRSGKHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISSSSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDDSDNSFAVLVPCYARIYNDFVDETKISVLSAVGNISDSFSTGQMAAASP

Homology

[Close]

BLAST of CmaCh05G005410 vs. TAIR 10
Match: AT5G65480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-13
Identity = 50/135 (37.04%), Postives = 70/135 (51.85%), Query Frame = 0


Query: 1   MSVAFPQLSWWLRSG-----KHKEPQSSNGGSALNASLDTANRETDTLKFSLVNGANISS 60
           M+V+FP+L  WL  G     + K+     G S+L+ SL    ++T T K       + SS
Sbjct: 1   MAVSFPRLPRWLCGGSNTKDREKKESIPKGSSSLSPSL----KKTTTSK-----TGSSSS 60

Query: 61  SSRRVKRKWHSREERKIDREYDIVLVPSDGGCMSGSESDDSDWSIGWSEPHGPGFQSDDD 120
           S ++ KR W  R       E D +      G +   E DD +WSIGW EPHGPGF+++DD
Sbjct: 61  SVKKTKRGWIGRGGSGSGGEEDKI------GNVVFPEPDDPEWSIGWVEPHGPGFKAEDD 120

Query: 121 SDNSFAVLVPCYARI 131
               F VLVP Y ++
Sbjct: 121 DCGGFVVLVPLYKKV 120

[Close]

BLAST of CmaCh05G005410 vs. TAIR 10
Match: AT4G38060.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 63 Blast hits to 63 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-09
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 89  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYARIYNDFVDETKIS 148
           SGSES      D  +WS+GW+EPHGP FQSDD+ +D  F VLVPCY  +     +     
Sbjct: 48  SGSESVDVVAGDGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCYRAVVEGSSNNNN-Q 107

Query: 149 VLSAVGNISDSFSTG 157
           +LSAV N+ +    G
Sbjct: 108 LLSAVKNLPNGLPPG 121

[Close]

BLAST of CmaCh05G005410 vs. TAIR 10
Match: AT4G38060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 89  SGSES------DDSDWSIGWSEPHGPGFQSDDD-SDNSFAVLVPCYARIYNDFVDETKIS 148
           SGSES      D  +WS+GW+EPHGP FQSDD+ +D  F VLVPCY  +     +     
Sbjct: 48  SGSESVDVVAGDGPEWSVGWTEPHGPDFQSDDEGNDGGFLVLVPCYRAVVEGSSNNNN-Q 107

Query: 149 VLSAVGNI 150
           +LSAV N+
Sbjct: 108 LLSAVKNL 114

The following BLAST results are available for this feature:

BLAST of CmaCh05G005410 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G005410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65480.1	1.7e-13	37.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G38060.1	1.9e-09	45.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G38060.2	3.3e-09	48.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..115
None	No IPR available	PANTHER	PTHR34464	OS09G0376300 PROTEIN	coord: 1..157
None	No IPR available	PANTHER	PTHR34464:SF5	SUBFAMILY NOT NAMED	coord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G005410.1	CmaCh05G005410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
molecular_function	GO:0008168	methyltransferase activity