CmaCh05G005380 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G005380
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptiondouble-stranded RNA-binding protein 1-like
LocationCma_Chr05: 2618233 .. 2621579 (+)
RNA-Seq ExpressionCmaCh05G005380
SyntenyCmaCh05G005380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAATATGGGTTTTAGCCCTAGGGCACCGACTAGCCTCCGAACTTTGAGTAGTTAAGCCCAGCGGCACTGCTTCTCCCTGTCCTCTCTGTTTTCCTCTCGCCTTTACCAATACTCACTTCTCGTGAGAGAGGATTCTCTCTTATCTACTCCTCACAGCTATGCCGGCCAAGGACAGCTTTCAAGGTATTCCATTTCTTTTCTTTTACTTTCGAGTAGCTACTTTTCGGAGTCGTTTCTATTATTATCTCTGGTGTCTGGATTGCTGTATTGATGTTGTTTTAGTTGGATTTCTCATGGAACTTGGAGTTTTTTTAGATTATTTTCCGAGAATTTTGCTAATTTTACCGGGCGGAATTGGGCGGGATAGGAGAGTATTCTGAGCTAACAAATTGTCCGCGTTGAGAACTGAAGTTGTTAATACACCTTTCCCAATTTTTCTCTTTAAAGAATGTGTTCTAAGTTATTTTAATTTATTCCTTTGTTTGAAGTGTTTGATGTTATGGTGCCAATGTTTTTCATTCAATTTATTTGATATTATATATATTTGTGAAGGATGGGTTATTGTTATTAATTTTGTTACTATTAGCTTTGGACAAGTATGTTGTTGGTGCTTATTTTTCTTATTCTTGGATGCATATCAGGTGTTTCAAATTGCTATGTTTTCAAAAGTCGACTGCAGGAATATGCACAAAAGGTGGGACTTCCTACACCTGTATATGAGACTATCAAAGAAGGGCCTTCCCATGAGCCAACATTTTATTCTACGGTGATCGTTAAAGATGTTAGATATGATTCACTTCCTGGATTCTCTAATCGCAAGGCAGCAGAGCAGTCAGCTGCTGAAGTAGCTCTGATGGAGCTGTCGAAATCTAATGATCTTAATCCACATGTCTCTCAACCTGTGGTAAGATTTCATATACCATTTATAGTTTTTTGTGAACCTCTCAATAACCAAATGTCAGAGTCCATTATTTGTTGGATGATTATTTGAAGTTAGACTGACATAAATTGAGGGAAATTTTGGTATTTGCATTTACTAAAAGCATTTGAGTATCCAACCTAAGTCATGGATTCAAGTCATGAGGACCTAGATTGAACTTCTGTGCACAATCCTTCTCTACTCCTCTCACCTAAACTATCCATAACAACCTTCTCGTTTAGACTATGCCTGATTGTTCGTTCCTATGAAATTCTTATTTAGGGTGCTGTGGTATGTAACGGCCCAAGCCCACCGCTAGCAGATATTGAGGGGAAACCCAAAAGGGAACATCCAAAGAGGACAATATCTGTTAGCCGTGGGATTTGGCTGTTTATGGTAAGTCTTTTTTATAGCCCTCTTTTGGCTTAATATTACACATTTTCTCAATCTGCAACCACCGAGGAACTTAAACATAAGCTAGGAAAGACCTTCTCAACTCTCACTAACAGTTGCTTTGGGGTAGGAAAGTTCCAACAGGCTTGACCAATGTCATAATTGGAGGAAGCTCCAACTACCCACAACTTGTGCTTTTGATTTGACCATCACTTACCTAGAATACCACACATAAAGTTATAGAAAGAAACCAAAGGTTTTTTTAGGACAGAAGTGTCGGGTTGGGAAGAAAGTAGGCCTAACAAAATTTCATGAATCTTCCCAGAGTGCTCTATCTAACTCATTTATAATTAATTCTAATTGCCTTTTTACGTAAATAAGTACTGTTCAAAAGGATAAATACGTTTTTTTTAAAACTCTTCAATGTATCAATGAGAAATGTGGTTCTTAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTTTTAAAAAAAAAAAAAAAAAAAAAAGAAGAATAAGAAAAAGGAAAAGGAAGAAGGTTCGTTTTATTCTTAACTTCATTGAGAAAAAAAGTTATTTAAGAGGTATAAATCGATTATGAAGTGTGTCTTTTAATGGAATAGTAGAGTACAGGGGGCTTAACATTGACAAATAACTGATGTGGGGACAATATAAATCGATTATGTACAGTTCATTCATCGAATCATATACTAGAAGACTTACCAGATCTATTATGCAAACAGTCATCTTCTACGCTGAAAATTGTTGTGGGAATTTGGCCGGTCTTTTGCTGTATCCTCTTATTATCAGGTTACGTAGTAAATAAAGCAGCAGAGTTGTATCCTTTTCTTTGGAGTCTTATTTGGCAGAAGTACTTCCGCTTGTTTCAATGATAATACATTATCTCAAGCAGTTTGTTTTGAATAAATAAGAAAGCTTCAAATTTATGTATGTTATCTAAATTCAAACTCTCACTAAATAAAGAATGGGCCTAAAACTATTGGGCTCTTACTAAACAGATTTCAACGGTCTGTACTTTCTGCTTTTTCTTTAGCGGTGGTGGAAGTAAAAAGAAGAAATTATGCTTTCTGTGGCAGTGTATTTTCCGCATCTTTTCTTTGACAACCTTACCTTTTTCCAGCATGAAACAGGACTATGCAAAAATCTGCTTCAGGAATATGCACAGAAGATGAACTTTGCAATCCCACTATATCAATGCAAAAAAGATGATAGTTCGGGCAGAACTTCCCTTTTCTCGTGTACAGTAGAAATTGGAGGGATCCGCTACATTGGTGCTGCAGCAAAAACAAAGAAAGAAGCAGAAATTAAAGCTGCAAGAACTGCTTTGTTAGCTATCCAGTCTTGCCCGACTTCGCTGCCTGAGAATTCTGTCAATCAAGTTCAGCTCACTGTGATCCCATGCAAGAGGAAAGAAGCAGCAGATTTCTCAGTTAAACCGAAAACTACTGGAGCACCCCGAATAAAGAAAGGGCGATTCAAGAAGGTGGTGTCAAAGAAAAAAGACAACAGAAGTGGACTGCCCAATTTGGAGTTTAACTTTGATAGATCATCCTCCTTCGAACCTCTTGAAACTACTGGGGTCGACCCGGTGCCAGGTTTAGGGGAATCTGTTGAATTAGCCAAAGATACCGTGCTGAATTCCGAGTACAAAACGACAGACCTAAGCTCAAGTGGCAATGATGTACTGGTCTCTAACATCCAAAGCGACACGCCTCAGCTCCCGAATGGTAATATTGGAAATGATCGTTTGGATACTTTCAGTTCCAATCAAATAAACTGTTCAACTTCTGATGTTATGAGTTTTCCTCTCTCTGACGTTCAAGCTACTTGTGGTGAAGTGGCGAATGTGGCCACTGGAATGACAGGGGAGCTTCACTGA

mRNA sequence

GGGAATATGGGTTTTAGCCCTAGGGCACCGACTAGCCTCCGAACTTTGAGTAGTTAAGCCCAGCGGCACTGCTTCTCCCTGTCCTCTCTGTTTTCCTCTCGCCTTTACCAATACTCACTTCTCGTGAGAGAGGATTCTCTCTTATCTACTCCTCACAGCTATGCCGGCCAAGGACAGCTTTCAAGGTGTTTCAAATTGCTATGTTTTCAAAAGTCGACTGCAGGAATATGCACAAAAGGTGGGACTTCCTACACCTGTATATGAGACTATCAAAGAAGGGCCTTCCCATGAGCCAACATTTTATTCTACGGTGATCGTTAAAGATGTTAGATATGATTCACTTCCTGGATTCTCTAATCGCAAGGCAGCAGAGCAGTCAGCTGCTGAAGTAGCTCTGATGGAGCTGTCGAAATCTAATGATCTTAATCCACATGTCTCTCAACCTGTGCATGAAACAGGACTATGCAAAAATCTGCTTCAGGAATATGCACAGAAGATGAACTTTGCAATCCCACTATATCAATGCAAAAAAGATGATAGTTCGGGCAGAACTTCCCTTTTCTCGTGTACAGTAGAAATTGGAGGGATCCGCTACATTGGTGCTGCAGCAAAAACAAAGAAAGAAGCAGAAATTAAAGCTGCAAGAACTGCTTTGTTAGCTATCCAGTCTTGCCCGACTTCGCTGCCTGAGAATTCTGTCAATCAAGTTCAGCTCACTGTGATCCCATGCAAGAGGAAAGAAGCAGCAGATTTCTCAGTTAAACCGAAAACTACTGGAGCACCCCGAATAAAGAAAGGGCGATTCAAGAAGGTGGTGTCAAAGAAAAAAGACAACAGAAGTGGACTGCCCAATTTGGAGTTTAACTTTGATAGATCATCCTCCTTCGAACCTCTTGAAACTACTGGGGTCGACCCGGTGCCAGGTTTAGGGGAATCTGTTGAATTAGCCAAAGATACCGTGCTGAATTCCGAGTACAAAACGACAGACCTAAGCTCAAGTGGCAATGATGTACTGGTCTCTAACATCCAAAGCGACACGCCTCAGCTCCCGAATGGTAATATTGGAAATGATCGTTTGGATACTTTCAGTTCCAATCAAATAAACTGTTCAACTTCTGATGTTATGAGTTTTCCTCTCTCTGACGTTCAAGCTACTTGTGGTGAAGTGGCGAATGTGGCCACTGGAATGACAGGGGAGCTTCACTGA

Coding sequence (CDS)

ATGCCGGCCAAGGACAGCTTTCAAGGTGTTTCAAATTGCTATGTTTTCAAAAGTCGACTGCAGGAATATGCACAAAAGGTGGGACTTCCTACACCTGTATATGAGACTATCAAAGAAGGGCCTTCCCATGAGCCAACATTTTATTCTACGGTGATCGTTAAAGATGTTAGATATGATTCACTTCCTGGATTCTCTAATCGCAAGGCAGCAGAGCAGTCAGCTGCTGAAGTAGCTCTGATGGAGCTGTCGAAATCTAATGATCTTAATCCACATGTCTCTCAACCTGTGCATGAAACAGGACTATGCAAAAATCTGCTTCAGGAATATGCACAGAAGATGAACTTTGCAATCCCACTATATCAATGCAAAAAAGATGATAGTTCGGGCAGAACTTCCCTTTTCTCGTGTACAGTAGAAATTGGAGGGATCCGCTACATTGGTGCTGCAGCAAAAACAAAGAAAGAAGCAGAAATTAAAGCTGCAAGAACTGCTTTGTTAGCTATCCAGTCTTGCCCGACTTCGCTGCCTGAGAATTCTGTCAATCAAGTTCAGCTCACTGTGATCCCATGCAAGAGGAAAGAAGCAGCAGATTTCTCAGTTAAACCGAAAACTACTGGAGCACCCCGAATAAAGAAAGGGCGATTCAAGAAGGTGGTGTCAAAGAAAAAAGACAACAGAAGTGGACTGCCCAATTTGGAGTTTAACTTTGATAGATCATCCTCCTTCGAACCTCTTGAAACTACTGGGGTCGACCCGGTGCCAGGTTTAGGGGAATCTGTTGAATTAGCCAAAGATACCGTGCTGAATTCCGAGTACAAAACGACAGACCTAAGCTCAAGTGGCAATGATGTACTGGTCTCTAACATCCAAAGCGACACGCCTCAGCTCCCGAATGGTAATATTGGAAATGATCGTTTGGATACTTTCAGTTCCAATCAAATAAACTGTTCAACTTCTGATGTTATGAGTTTTCCTCTCTCTGACGTTCAAGCTACTTGTGGTGAAGTGGCGAATGTGGCCACTGGAATGACAGGGGAGCTTCACTGA

Protein sequence

MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSGRTSLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSVNQVQLTVIPCKRKEAADFSVKPKTTGAPRIKKGRFKKVVSKKKDNRSGLPNLEFNFDRSSSFEPLETTGVDPVPGLGESVELAKDTVLNSEYKTTDLSSSGNDVLVSNIQSDTPQLPNGNIGNDRLDTFSSNQINCSTSDVMSFPLSDVQATCGEVANVATGMTGELH
Homology
[Close]
BLAST of CmaCh05G005380 vs. ExPASy Swiss-Prot
Match: O04492 (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.8e-70
Identity = 154/283 (54.42%), Postives = 191/283 (67.49%), Query Frame = 0 

Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           M + D   GVSNCYVFKSRLQEYAQK  LPTPVYE +KEGPSH+  F STVI+  VRY+S
Sbjct: 1   MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGF NRKAAEQSAAEVAL EL+KS++L+  VSQPVHETGLCKNLLQEYAQKMN+AIPLY
Sbjct: 61  LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLY 120

Query: 121 QCKKDDSSGRTSLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QC+K ++ GR + F+CTVEIGGI+Y GAA +TKK+AEI A RTALLAIQS       N  
Sbjct: 121 QCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS---DTKNNLA 180

Query: 181 N-QVQLTVIPCKRKEAADFSVKPKTTGAPRIKKGRFKKVVSKKKDNRSG------LPNLE 240
           N   QLTV+PC++K         +T    + +K +FKK   K K   +       +P   
Sbjct: 181 NYNTQLTVLPCEKKTIQAAIPLKETVKTLKARKAQFKKKAQKGKRTVAKNPEDIIIPPQP 240

Query: 241 FNFDRSSSFEPLETT-GVDPVPGLGESVELAKDTVLNSEYKTT 276
            +  ++   E +ETT  ++P   +    E A  +V   + +TT
Sbjct: 241 TDHCQNDQSEKIETTPNLEPSSCMNGLKEAAFGSVETEKIETT 280

[Close]
BLAST of CmaCh05G005380 vs. ExPASy Swiss-Prot
Match: Q0IQN6 (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB8 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.1e-59
Identity = 131/215 (60.93%), Postives = 153/215 (71.16%), Query Frame = 0 

Query: 10  VSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKA 69
           V NCYVFKSRLQEYAQK GL TP Y T KEGPSHEP F STV++ +  YDSLPGF NRKA
Sbjct: 28  VENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87

Query: 70  AEQSAAEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSG 129
           AEQSAAEVALME+ KS   N ++   V ETGLCKNLLQEYAQKMN+AIP Y C K  S+ 
Sbjct: 88  AEQSAAEVALMEIVKSIPANANI-PAVQETGLCKNLLQEYAQKMNYAIPSYICTK--SAS 147

Query: 130 RTSLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSVNQVQLTVIP 189
             + F CTVEIGGI+YIGAAA+TKK+AEIKAARTALLAIQ       E S N     ++ 
Sbjct: 148 GLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ----GQSEGSANGATKYIVV 207

Query: 190 CKRKEAADFSVKPKTTGAP-RIKKGRFKKVVSKKK 224
             ++   +   +P  T  P ++KKG FKK  +K+K
Sbjct: 208 PGKRVGKEVEKRPIETPKPLKVKKGGFKKKWNKRK 235

[Close]
BLAST of CmaCh05G005380 vs. ExPASy Swiss-Prot
Match: Q0IV63 (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB7 PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.9e-59
Identity = 134/215 (62.33%), Postives = 153/215 (71.16%), Query Frame = 0 

Query: 10  VSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKA 69
           V NCYVFKSRLQEYAQK GL TP Y T KEGPSHEP F STV++ +  YDSLPGF NRKA
Sbjct: 28  VENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKA 87

Query: 70  AEQSAAEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSG 129
           AEQSAAEVALME+ KS   N ++   V ETGLCKNLLQEYAQKMN+AIP Y C K  S+ 
Sbjct: 88  AEQSAAEVALMEIVKSIPANANI-PAVQETGLCKNLLQEYAQKMNYAIPSYICTK--SAS 147

Query: 130 RTSLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSVN-QVQLTVI 189
             + F CTVEIGGI+YIGAAA+TKK+AEIKAARTALLAIQ       E S N   +  V+
Sbjct: 148 GLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ----GQSEGSANGATKYIVV 207

Query: 190 PCKRKEAADFSVKPKTTGAPRIKKGRFKKVVSKKK 224
           P KR       +  +T    +IKKG FKK  +K+K
Sbjct: 208 PGKRVGKEVEKMPIETPKPLKIKKGGFKKKWNKRK 235

[Close]
BLAST of CmaCh05G005380 vs. ExPASy Swiss-Prot
Match: Q0DJA3 (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB3 PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 9.5e-59
Identity = 131/215 (60.93%), Postives = 151/215 (70.23%), Query Frame = 0 

Query: 10  VSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKA 69
           V NCYVFKSRLQEYAQK GL TP Y T KEGPSHEP F STV++ +  Y SLPGFSNRKA
Sbjct: 30  VENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKA 89

Query: 70  AEQSAAEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSG 129
           AEQSAAEVALME+ KS   N ++   V ETGLCKNLLQEYAQKMN+AIP Y C K  S  
Sbjct: 90  AEQSAAEVALMEIVKSIPANANI-PAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASG- 149

Query: 130 RTSLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSVNQVQLTVIP 189
             + F CTVEIGGI+YIGAAA+TKK+AEIKAARTALLAIQ       E S N     ++ 
Sbjct: 150 -LAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ----GQSEGSANGATKYIVV 209

Query: 190 CKRKEAADFSVKPKTTGAP-RIKKGRFKKVVSKKK 224
             ++   +   +P  T  P + KKG FKK  +K+K
Sbjct: 210 PGKRVGKEVEKRPIETPKPLKAKKGGFKKKWNKRK 237

[Close]
BLAST of CmaCh05G005380 vs. ExPASy Swiss-Prot
Match: Q0DKP4 (Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB2 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.2e-22
Identity = 61/158 (38.61%), Postives = 90/158 (56.96%), Query Frame = 0 

Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y  I+EGP H P F +TV      ++S    S  + AE +A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 75  AEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSGRTSLF 134
           AEVAL ELSK    +   ++ + ETG+ KNLLQE A +    +P+Y   +    G T +F
Sbjct: 61  AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIR-SGPGHTPVF 120

Query: 135 SCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCP 173
           +CTVE+ G+ + G   KTKK+A+  AA  A   ++  P
Sbjct: 121 TCTVELAGMTFTGNPGKTKKQAQKNAAMAAWSELKQLP 157

[Close]
BLAST of CmaCh05G005380 vs. TAIR 10
Match: AT1G09700.1 (dsRNA-binding domain-like superfamily protein )

HSP 1 Score: 267.7 bits (683), Expect = 1.3e-71
Identity = 154/283 (54.42%), Postives = 191/283 (67.49%), Query Frame = 0 

Query: 1   MPAKDSFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDS 60
           M + D   GVSNCYVFKSRLQEYAQK  LPTPVYE +KEGPSH+  F STVI+  VRY+S
Sbjct: 1   MTSTDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNS 60

Query: 61  LPGFSNRKAAEQSAAEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLY 120
           LPGF NRKAAEQSAAEVAL EL+KS++L+  VSQPVHETGLCKNLLQEYAQKMN+AIPLY
Sbjct: 61  LPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLY 120

Query: 121 QCKKDDSSGRTSLFSCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCPTSLPENSV 180
           QC+K ++ GR + F+CTVEIGGI+Y GAA +TKK+AEI A RTALLAIQS       N  
Sbjct: 121 QCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS---DTKNNLA 180

Query: 181 N-QVQLTVIPCKRKEAADFSVKPKTTGAPRIKKGRFKKVVSKKKDNRSG------LPNLE 240
           N   QLTV+PC++K         +T    + +K +FKK   K K   +       +P   
Sbjct: 181 NYNTQLTVLPCEKKTIQAAIPLKETVKTLKARKAQFKKKAQKGKRTVAKNPEDIIIPPQP 240

Query: 241 FNFDRSSSFEPLETT-GVDPVPGLGESVELAKDTVLNSEYKTT 276
            +  ++   E +ETT  ++P   +    E A  +V   + +TT
Sbjct: 241 TDHCQNDQSEKIETTPNLEPSSCMNGLKEAAFGSVETEKIETT 280

[Close]
BLAST of CmaCh05G005380 vs. TAIR 10
Match: AT3G26932.1 (dsRNA-binding protein 3 )

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-22
Identity = 60/158 (37.97%), Postives = 87/158 (55.06%), Query Frame = 0 

Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y   +EGP H P F ++V      ++S    S  + AE SA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 75  AEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSGRTSLF 134
           AEVAL  LS         ++ + ETG+ KNLLQE A +    +P+Y   +    G    F
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVR-SGPGHIPTF 120

Query: 135 SCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCP 173
           SCTVE+ G+ + G +AKTKK+AE  AA  A  +++  P
Sbjct: 121 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMP 157

[Close]
BLAST of CmaCh05G005380 vs. TAIR 10
Match: AT3G26932.2 (dsRNA-binding protein 3 )

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-22
Identity = 60/158 (37.97%), Postives = 87/158 (55.06%), Query Frame = 0 

Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y   +EGP H P F ++V      ++S    S  + AE SA
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 75  AEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSGRTSLF 134
           AEVAL  LS         ++ + ETG+ KNLLQE A +    +P+Y   +    G    F
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVR-SGPGHIPTF 120

Query: 135 SCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAIQSCP 173
           SCTVE+ G+ + G +AKTKK+AE  AA  A  +++  P
Sbjct: 121 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSLRKMP 157

[Close]
BLAST of CmaCh05G005380 vs. TAIR 10
Match: AT2G28380.1 (dsRNA-binding protein 2 )

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-20
Identity = 64/179 (35.75%), Postives = 100/179 (55.87%), Query Frame = 0 

Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y  I+EGP H P F +TV      ++S    S  + AE SA
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 75  AEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSGRTSLF 134
           AEVAL  LS     +   ++ + ETG+ KNLLQE AQ++   +P Y   +    G   +F
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFR-SGLGHQPVF 120

Query: 135 SCTVEIGGIRYIGAAAKTKKEAEIKAARTALLAI----QSCPTSLPE-NSVNQVQLTVI 189
           + TVE+ GI + G  AK KK+AE  AA  A  ++    +   +S+PE  ++++++  +I
Sbjct: 121 TGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVII 178

[Close]
BLAST of CmaCh05G005380 vs. TAIR 10
Match: AT5G41070.1 (dsRNA-binding protein 5 )

HSP 1 Score: 95.5 bits (236), Expect = 8.9e-20
Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 0 

Query: 15  VFKSRLQEYAQKVGLPTPVYETIKEGPSHEPTFYSTVIVKDVRYDSLPGFSNRKAAEQSA 74
           ++K++LQE AQ+     P Y  I+EGP H P F ++V      ++S    S  + AE +A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 75  AEVALMELSKSNDLNPHVSQPVHETGLCKNLLQEYAQKMNFAIPLYQCKKDDSSGRTSLF 134
           AEV+L  LS         ++ + ETG+ KNLLQE A +    +P+Y   +  S      F
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPG-F 120

Query: 135 SCTVEIGGIRYIGAAAKTKKEAEIKAARTA 165
           SCTVE+ G+ + G +AKTKK+AE  AA  A
Sbjct: 121 SCTVELAGMTFTGESAKTKKQAEKNAAIAA 149

The following BLAST results are available for this feature:
BLAST of CmaCh05G005380 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O044921.8e-7054.42Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE... [more]
Q0IQN61.1e-5960.93Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
Q0IV631.9e-5962.33Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
Q0DJA39.5e-5960.93Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
Q0DKP43.2e-2238.61Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
BLAST of CmaCh05G005380 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G09700.11.3e-7154.42dsRNA-binding domain-like superfamily protein [more]
AT3G26932.15.6e-2237.97dsRNA-binding protein 3 [more]
AT3G26932.25.6e-2237.97dsRNA-binding protein 3 [more]
AT2G28380.11.1e-2035.75dsRNA-binding protein 2 [more]
AT5G41070.18.9e-2038.67dsRNA-binding protein 5 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 16..83
e-value: 7.8E-20
score: 81.9
coord: 102..169
e-value: 9.9E-15
score: 64.9
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 103..166
e-value: 1.7E-14
score: 54.3
coord: 17..81
e-value: 2.5E-14
score: 53.8
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 101..170
score: 11.334196
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 15..84
score: 14.684326
NoneNo IPR availableGENE3D3.30.160.20coord: 16..97
e-value: 3.1E-25
score: 90.1
NoneNo IPR availableGENE3D3.30.160.20coord: 98..170
e-value: 2.3E-22
score: 81.0
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 16..87
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 103..173
IPR031147Double-stranded RNA-binding proteinPANTHERPTHR11207:SF1DOUBLE-STRANDED RNA-BINDING PROTEIN 1coord: 1..226
IPR011907Ribonuclease IIIPANTHERPTHR11207RIBONUCLEASE IIIcoord: 1..226
IPR044450AtDRB-like, first double-stranded RNA binding domain, plantCDDcd19907DSRM_AtDRB-like_rpt1coord: 15..83
e-value: 6.57216E-31
score: 109.873

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G005380.1CmaCh05G005380.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010589 leaf proximal/distal pattern formation
biological_process GO:0010305 leaf vascular tissue pattern formation
biological_process GO:0035279 mRNA destabilization-mediated gene silencing by miRNA
biological_process GO:0031054 pre-miRNA processing
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009733 response to auxin
biological_process GO:0009735 response to cytokinin
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0016075 rRNA catabolic process
cellular_component GO:0010445 nuclear dicing body
molecular_function GO:0003725 double-stranded RNA binding
molecular_function GO:0042802 identical protein binding
molecular_function GO:0035198 miRNA binding
molecular_function GO:0004525 ribonuclease III activity
molecular_function GO:0003723 RNA binding