CmaCh05G005360 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G005360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	GATA transcription factor 25-like
Location	Cma_Chr05: 2605144 .. 2611324 (-)
RNA-Seq Expression	CmaCh05G005360
Synteny	CmaCh05G005360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATATTATTTAGTAATTATTTTATAAATTATGTTAATTTTGAAGAAATCACTAATCTACATTCCTCTGTCGAACGCCTCTCTCACTTCCTAGAGTTCCTAAACGCAACGACGGCCGCTGTAACTACAGACTCCGCGACATCTTCATACAGACTTCTTTGAGCTCCTCTTCCTCCATTGTCTGTTGGTCGGCCTCGATTTTCATCTATTTGGTCTGTTAGTTTTCTCGCCGGCCATTCCCGATTTCCCCATTCTGCAATGCTGCAAACACCTTTGATTTTGTTCTGCCGGAGTTAATGTACGGACGAGCTGAACCGTTGACCATGGGCGACCAGATCGCCTCCACCCCCGACTGCGGCGACACCGGCGAGCCCTTGGATAATCGCCTTGTTCGATACGGAGCTCACTCGCTCGAAGACGGCACTGGAGTTGGCAGCATGATCGAGGATCTCAACCCAGATGCTGTCTATGTTTCGGCCGGTGATGGTTCGGATATGGCTGTTCAACGCAGTGATGGTTCAAGCCAGCTCACTCTTTCGTTCCGTGGTCAAGTCTATCTCTTCGACGCAGTGTCTCCCGAGAAGGTAAAGTGGTTATGCGATTTAGGGTTTTAGTTTTTCAAATTTTTTCTTCTCGGTGCTCTGAATTATGGTAATGGGACCGGGTTTATAAATCTTGTGAGTTTTGAGAATGGAATACATTGTATTTTTCCTCAATTTCTATGGCGGCCTTAAGGGGTGGGAGAATTGAACATTAGGTTGATTAATTGTAAAATAAGAACATTCCGCCTGCTTTGTAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGCTGCGAACTATCTTCGGGTCAGCAAAGCGTGGATTTGGTAAATCAGAATCAGAGGGTACTACTGGAGCTTGTATGAGTATGACATTCTTTTTGGAGAAGTGTATGTTTTACTTTTTAATTTGTTTCCTTCATATTTTATAGAATGCTATTGACTTACCCGGTCGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTAAATCGGTTTCGACAGAAGAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGTCTGGCGTTGAACATGTTAAGTTACTGGCTGAATTTTGTTTATTTCTACCGCAGTTTTGTACATTAGACGTTTTTTAGTTCGTGCACGTTGTGTTTTCACTCAATCTTTTGCATTTGAAAGAACTCTGGGATTTTGATCTCTTATTTAAGTTGATAAAGTAATTGCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGACAGTGTCTCAGAGTCTCGTCGAGATGAAAATCCACTTGAAACTTCGTGAGTTTTCAGTCCTTTAAATTATAACGACGTGAAACAACTATTTTAACACTTGAATGCTGTCTGTGGAATTTGGCATTTCATTTCAGTATCAGAATTTGTAGTTTGTTATATGCCAGAATTCACATTTATATCTTATATATATACGTTGTGATCAAAAATCTTATTTATACCTATGCAATTGTGTACTTTCTATAGATGCACAAATTGTGGCGTAAGTTCAATGGTGACCCCAATGATGCGACGAGGGCCATCTGGGCCTAGATCACTTTGTAACGCCTGCGGACTTTTTTGGGCTAACAGGGTAAGTATGCTCCTGAAGACGTTGATACTTTGTACTATTTATTATATTTTAGGAAAGCTGCACTTTCCCTAGATGGTCTGGCTAATGAATATGCCAGACCTTTGCATGGAACTTATTGGCTTTTATGATGTAACGTGCGTCATCTTTATGCTATTGCCTAATTGTGTGTGAACTTTTGTCTTCAAGTGCTTGTTTGGTTGGGCGTGTTATCATTTTCATTGATCTGTATGGGGCACAATGATTCTAGGCTTTAGCTGCCTTAGGATGAGGTCACCAGTGGAAATAGAAAAGGTGATGATAGGGTGTCTAGGTTATTTTGGGTCTTTTTGGTGGTCATTGGTCTTTAAGAAATTTTTTTCACCCGTTCTTGCATTTTCCTTCTTATTCTAACACAATCTTTCTGCTTCTCTATTACTTAAGTAACCACCTGTAACGGCCAAAGTCTTCCGCTAGCCGATATTATCCTCTTTGGGCTTTCCCTTTTGGGCTTCCTCTCAAAGTTTTAAAATGCATATGCTAGGGAGAGGTTGCCACACCCTTATAAAAAAATGCTTCGTTCTCCTCCCCAATTGATGAGGGATCTCACAATCCATCCTCTTTCGGGGCCCAGCATCCTCGCTAACACTAGTTCCCTTCTCCAATCGATGAGGGACTCCCCAATCCACCCCTTTCGGGGTCAGCGTCCTTGCTGGCACACCGCCACCTTACGAAAATATCTCCCTTTTCCCTTTCTTCTCCATTTTGCTGCTTCTTGATGTAGTGTAATTAGAAGTAGTTTTGTAGTTTTTGTTTGAATTGTTAACCATTTTATTTTTCTAGTTAGTTAGTTGGTTTATTTGGATTATTTGGCTATAACTTCTCTATAGAGTTGATGAACTTTTGATCATTAATAGAGGTTTAGTTAAAAGTTGTTTGAGATTTTTCTCCTTCGATTCTTGGTTGCCTGACCTCCCTTGATTGTTGTTTTAATTTTCTTGTTCAGTAATTATTTCTATCTCCATCCTTTTTTGCTTCTCTTGTTTATTCCGCCTGTCCTCTTTGCTTCTTTCACTTTCTGTTCATCTCTTCCATGCAGTTTCTTTAGATGTTCCTTTTGAACTTGGTTTTTCTGCAAGGATGCTCAACTCAACTTGACTAAATGACTGTCACCCTCCAACCCAGCACTATCCCAATAAAATCTCCCTACTCTTTAGATGTTCCTTTTGAACTTGATTTTTCCTAGCTTTATATAACTAGCTTTCCTTTTCCCTTCAAATCCTTCACTGCTTCATTGTGGATCATTACTGCATCCAAATTTGTATATTTTTTTTTGTTAAAGCCCAATTGTCAGTTTTCGATCATGTGAGGAAGAAAAAACAGAAAAAAATGAAAAGAAAAAAACAACAAAATTCTATTATACCTCTCCTTTTCACGAAAAAGGAAGGTTTTTGTGAGAATATGGGGTGTGATTGTTTGAGGGCTTTGGAGAGAGAACAACATACTTTTTAGAGGGTAGGAGAGACCTCTGTGCAAGGTGTGGGCCTTGGTTAGTTCGGTGTGCCCCTGTGTGCTTGTGTGACTGAGCCTTTTTGTATTTTTTTTTTTTAGTTGATGAGAACCTTCCCAACTAAATCTTAGAACACCTTAAGCACACCCATTATATTCGTCTTTTTAAAGAATTCTAGAGCGAACCGCACTGCCCATATCGTTGTTCAAGGGGCCTCTCTATAACCAAAATTTCCGGTGTTCTCCCAATTGGTTTGTGACTGCAGTTTTGAGCATAAAACTCTGACTGGATTCAGCGGTGTGCAACTTCTGGAAATAGTAAATAATTAATGACCCCCTCGCCTTTGGGTTGAGAATTGTCAAGTGTTTGAATACATTTCTCTTTGTTATATAAATAAGATAACTGCCAGTGTTTCTGATTTTGTAATGGATTATTAAGTTCTAGAACCAATTCAAACCGAGCATATTTGGTTGAGACACTACAGTGGTTTCTTAACTACTTCTGATTGATCTTGGTAAACGCAAAATTTGGAAATGATTGCTGTGGGTTCAGTTGAAAGTGGTCCATGGTCAGGGAACTGAGCCACAAACACCCTCAGGTTGAATAAACCTGTTCTCATGCTCCTATATACTAAACATAGCACGCAGACGTGCACAGACTGTGTGGTGGCGTGCGTACCTGTTAATGTTATGATTATTTCTATTGCCTTATGGCTTTATAAAAATACATTTATACATCACGTGTATAAATTGATATATGCATCTTGAACTATATTCATACATGATTATGCATGCATAGTGTCAATTCGCACTTCAATGTTACAGTCATAGTGAGATCGTTTTAATATTTGCTTGTGCTTCTTTTATTTGCACTTACAAGGTGAACGGGGGCAGAACAAAACCCTCCTAACTTGTGGTAGATTTTAAGTATCATAACTTGTGGTAGTTGATATTTTATAGTTGCCAATAATTTTTCAAGAACTTTTAAAGATTATAGTACTCAAAAAGTCAGAATGTTAAACTTTATCCTATTGCAAGAGAATTTCTGGCTGATGCCCCTGGAGGTAAGGGAGTCGAGTGCATTTGCATTTCTATTATATAAAGTTTAGATTTTTCTATTTTGATTATCCATGTGAATTTTACAATTTTCTTCTATTCCTATTATAGTTGTTACCATTTGCTATTATCTCTATTCCCTAGAGGTGTAGGAAATTGAACCGAATCAGTTCGGTTTGTGCTGGTTTTTGATAACCGAGGTTCGGTTTGTGCTGGTTTTTGATAACCGAGGTTCGGTTTGGATCTGTATCAAAACAACAAATCCACACCGACATTTTTGGGTTTAGTTCTCTCATATTTCCCCTTTGCGCCATCCTTGTTCACACTGACAGCCTTCTCTCTCAAGTTTCAATGCCCAACTATGACCATTCACAAGGAGACGACACTCCCTCTAGTGAGCGGCAAGATACTCTGGTGGTTCTTCCCCAATGCTGGCAAATAACGACCATCGTTCCTCTTATTTCTCTTAACGCCCAATGCTGCCCACATGTCTTTCCCTAACGAATTCCAACGTGCTATCCACTATCTCCAACAGTGGCTTGGCGATGGATTCAAATGGGTTACTCTGGTGGCTCTTCCCCTACAATGGTGACTTGACTTTAACATTTGATTGTTTTCTGCTCCCCCAATTTCCACAATTCTGCAATTGATGTTCTTCATCTTTTTACCTCCATGAAACCCGGCTCGCCCGCAAATGGAATTCCAATCATGTTCACTATTCCATTCGGACGCCAGGCTTATCCCTCTCTCACTGCAACAATGTCCATCTCATCCACGATTCATCTTCCTCAAATGGGTCTCAAAATCTCTCCAAGTTTGAGGGAAGAAACAAAGAACCCCATCTGGATTTCACCCCAAACTTCTTTAACTACCCACTCGATCCACTCTGTTTTTACCCTTCCATGTTGTCGAGATTCCTGTAAATTGTATGGTTGTCTGGGGTTATGGTTTTGATGTTGTACAGTGTTGAATTTCCGTGTCAAAGAAGAATTTTTGAGTGTTTTCTGTGCTTGGGGAGGAAGGAACTATAGGGAGCAAGAGTGGTCATTGACGTCGAAAATCCAAGGAAAGAAAAAAACCTTAAAACCGACACTGGGTCGGATCAGGTTTATCCTTTGTAGAACTGAACCAGTTGGGGTCGGACTGGTTCTGCAGTAGTAGACCCAACCTGGCCCGACCCATTTTCACCTCTGCTATTCTCTATGCTTGAACGTCTATTTCGTTATGTATACCGTTTAATTGGCAATTTCATTTGCTTTCTCATTTTGAGCCGAGCATCACTACTGCTAAGACTTCATTATTCTCTTGAACAATCTGCTGTTAAGCTATCCAATTTTCAATGTCTTGTTCATGCAACATTGCAGGGCACTTTAAAGGATCTTTCAAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCGAACAGGTATGCGCCAATTGTCGAAATTCTTCTTCCTTGTTTAATTTTTGATGACCTCATTCTGGTTTTATATGTATTCCATGTTCCAACTCAACTAATTTCATCATTTTAGTGTGAAAGTGATGCTGCCAAGGACTTCGACTGCAGACGTGGTAACCATGCACCAAGCAATCTCGTTTCTTTCCCAAATGGTGATACCTCTACTTTAATGGCTGAGCATTAGAAAGAATGACGTTTGTCATTACAGATAAAAAAAAAGGCCATTTCTGGCTGCTTCTGGCTTCATTCCATCACGCCCTCGTTTTGGAAATTTTACAACGTGTGTTGTAGAATGTACAGATATAGCAATGCCTTAAATTAAATACGAGAAGAAAAACATCTTCTCCTCATTATGTCACCCTCTTACCTACCCTATAAAGTACTGCTGATTGCCTTCTTTTTCTCTCTACAAATTTTCGATATCTCTCATTGTAGGTAGATTTAAACGTCTGACCTCAAGAAAAAGAATATATGTCAATTACCAAATTCATGTCAGTGG

mRNA sequence

ATGATATTATTTAAAATCACTAATCTACATTCCTCTGTCGAACGCCTCTCTCACTTCCTAGAGTTCCTAAACGCAACGACGGCCGCTTTTTCTCGCCGGCCATTCCCGATTTCCCCATTCTGCAATGCTGCAAACACCTTTGATTTTGTTCTGCCGGAGTTAATGTACGGACGAGCTGAACCGTTGACCATGGGCGACCAGATCGCCTCCACCCCCGACTGCGGCGACACCGGCGAGCCCTTGGATAATCGCCTTGTTCGATACGGAGCTCACTCGCTCGAAGACGGCACTGGAGTTGGCAGCATGATCGAGGATCTCAACCCAGATGCTGTCTATGTTTCGGCCGGTGATGGTTCGGATATGGCTGTTCAACGCAGTGATGGTTCAAGCCAGCTCACTCTTTCGTTCCGTGGTCAAGTCTATCTCTTCGACGCAGTGTCTCCCGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGCTGCGAACTATCTTCGGGTCAGCAAAGCGTGGATTTGGTAAATCAGAATCAGAGGAATGCTATTGACTTACCCGGTCGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTAAATCGGTTTCGACAGAAGAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGACAGTGTCTCAGAGTCTCGTCGAGATGAAAATCCACTTGAAACTTCATGCACAAATTGTGGCGTAAGTTCAATGGTGACCCCAATGATGCGACGAGGGCCATCTGGGCCTAGATCACTTTGTAACGCCTGCGGACTTTTTTGGGCTAACAGGGGCACTTTAAAGGATCTTTCAAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCGAACAGTGTGAAAGTGATGCTGCCAAGGACTTCGACTGCAGACGTGGTAACCATGCACCAAGCAATCTCGTTTCTTTCCCAAATGGTGATACCTCTACTTTAATGGCTGAGCATTAGAAAGAATGACGTTTGTCATTACAGATAAAAAAAAAGGCCATTTCTGGCTGCTTCTGGCTTCATTCCATCACGCCCTCGTTTTGGAAATTTTACAACGTGTGTTGTAGAATGTACAGATATAGCAATGCCTTAAATTAAATACGAGAAGAAAAACATCTTCTCCTCATTATGTCACCCTCTTACCTACCCTATAAAGTACTGCTGATTGCCTTCTTTTTCTCTCTACAAATTTTCGATATCTCTCATTGTAGGTAGATTTAAACGTCTGACCTCAAGAAAAAGAATATATGTCAATTACCAAATTCATGTCAGTGG

Coding sequence (CDS)

ATGATATTATTTAAAATCACTAATCTACATTCCTCTGTCGAACGCCTCTCTCACTTCCTAGAGTTCCTAAACGCAACGACGGCCGCTTTTTCTCGCCGGCCATTCCCGATTTCCCCATTCTGCAATGCTGCAAACACCTTTGATTTTGTTCTGCCGGAGTTAATGTACGGACGAGCTGAACCGTTGACCATGGGCGACCAGATCGCCTCCACCCCCGACTGCGGCGACACCGGCGAGCCCTTGGATAATCGCCTTGTTCGATACGGAGCTCACTCGCTCGAAGACGGCACTGGAGTTGGCAGCATGATCGAGGATCTCAACCCAGATGCTGTCTATGTTTCGGCCGGTGATGGTTCGGATATGGCTGTTCAACGCAGTGATGGTTCAAGCCAGCTCACTCTTTCGTTCCGTGGTCAAGTCTATCTCTTCGACGCAGTGTCTCCCGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGCTGCGAACTATCTTCGGGTCAGCAAAGCGTGGATTTGGTAAATCAGAATCAGAGGAATGCTATTGACTTACCCGGTCGCAGTAGTCAACCGCAAAGGGCGGCCTCGTTAAATCGGTTTCGACAGAAGAGGAAGGAGCGATGTTTTGACAAAAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCATGACAGTGTCTCAGAGTCTCGTCGAGATGAAAATCCACTTGAAACTTCATGCACAAATTGTGGCGTAAGTTCAATGGTGACCCCAATGATGCGACGAGGGCCATCTGGGCCTAGATCACTTTGTAACGCCTGCGGACTTTTTTGGGCTAACAGGGGCACTTTAAAGGATCTTTCAAAGAGAAGTCAGGACCATCGGGTGACTCCGGCCGAACAGTGTGAAAGTGATGCTGCCAAGGACTTCGACTGCAGACGTGGTAACCATGCACCAAGCAATCTCGTTTCTTTCCCAAATGGTGATACCTCTACTTTAATGGCTGAGCATTAG

Protein sequence

MILFKITNLHSSVERLSHFLEFLNATTAAFSRRPFPISPFCNAANTFDFVLPELMYGRAEPLTMGDQIASTPDCGDTGEPLDNRLVRYGAHSLEDGTGVGSMIEDLNPDAVYVSAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAIDLPGRSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHDSVSESRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPAEQCESDAAKDFDCRRGNHAPSNLVSFPNGDTSTLMAEH

Homology

[Close]

BLAST of CmaCh05G005360 vs. ExPASy Swiss-Prot
Match: Q9LRH6 (GATA transcription factor 25 OS=Arabidopsis thaliana OX=3702 GN=GATA25 PE=1 SV=2)

HSP 1 Score: 247.3 bits (630), Expect = 2.6e-64
Identity = 140/271 (51.66%), Postives = 185/271 (68.27%), Query Frame = 0


Query: 102 MIEDLNPDAVYVSAG----DGSDMAVQRSDGS-----------SQLTLSFRGQVYLFDAV 161
           M E  +PD++Y +A     DGS +   RSDGS           +QLT+SFRGQVY+FDAV
Sbjct: 39  MEEIPHPDSIYGAASDLIPDGSQLVAHRSDGSELLVSRPPEGANQLTISFRGQVYVFDAV 98

Query: 162 SPEKVQAVLLLLGG-CELSSGQQSVDLV-NQNQRNAIDLPGRSSQPQRAASLNRFRQKRK 221
             +KV AVL LLGG  EL+ G Q ++L   QN    ++   R S PQRA SL+RFR+KR 
Sbjct: 99  GADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRN 158

Query: 222 ERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHDSVSESRRDENPLETSCTNCG 281
            RCF+KKVRYGVRQEVALRM RNKGQFTSSK  DG+Y+  +  +S +D+   E SCT+CG
Sbjct: 159 ARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDGAYNSGTDQDSAQDDAHPEISCTHCG 218

Query: 282 VSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPAEQCE----SDAA 341
           +SS  TPMMRRGPSGPR+LCNACGLFWANRGTL+DLSK+++++++   +  +    +DAA
Sbjct: 219 ISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEENQLALMKPDDGGSVADAA 278

Query: 342 KDFDCRRGN-HAPSNLVSFPNGDTSTLMAEH 351
            + +    +    +++VS  NGD S L+ +H
Sbjct: 279 NNLNTEAASVEEHTSMVSLANGDNSNLLGDH 309

[Close]

BLAST of CmaCh05G005360 vs. ExPASy Swiss-Prot
Match: Q8H1G0 (GATA transcription factor 28 OS=Arabidopsis thaliana OX=3702 GN=GATA28 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.1e-46
Identity = 120/256 (46.88%), Postives = 153/256 (59.77%), Query Frame = 0


Query: 79  EPLDNRLVRYGAHSLEDGTGV----------GSMIEDL------NPDAVYVSAGDGSDMA 138
           +P+  +   +  H + +G+G+          G M E +      +P  V  + G+  D  
Sbjct: 18  DPMHVQFEHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRG 77

Query: 139 VQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCEL-SSGQQSVDLVNQNQRNAI 198
            ++ D   QLTLSF+GQVY+FD+V PEKVQAVLLLLGG EL  +    +   +QN R   
Sbjct: 78  SEQGD---QLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNR-VS 137

Query: 199 DLPG---RSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPD 258
            LPG   R S PQR ASL RFR+KRK R FDKK+RY VR+EVALRMQRNKGQFTS+K  +
Sbjct: 138 SLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNN 197

Query: 259 ----------GSYSHDSVSESRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACG 305
                     GS    ++  S       E SC +CG+    TPMMRRGP+GPR+LCNACG
Sbjct: 198 DEAASAGSSWGSNQTWAIESSEAQHQ--EISCRHCGIGEKSTPMMRRGPAGPRTLCNACG 257

[Close]

BLAST of CmaCh05G005360 vs. ExPASy Swiss-Prot
Match: Q5Z4U5 (GATA transcription factor 20 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA20 PE=2 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.3e-46
Identity = 102/182 (56.04%), Postives = 127/182 (69.78%), Query Frame = 0


Query: 129 SSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAIDLPGRSS 188
           S+QLTLSF+G+VY+FD+VSP+KVQAVLLLLGG EL+ G      +     ++     R +
Sbjct: 125 SNQLTLSFQGEVYVFDSVSPDKVQAVLLLLGGRELNPG------LGSGASSSAPYSKRLN 184

Query: 189 QPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHDSVSE 248
            P R ASL RFR+KRKER FDKK+RY VR+EVALRMQRN+GQFTSS KP G  +   ++ 
Sbjct: 185 FPHRVASLMRFREKRKERNFDKKIRYSVRKEVALRMQRNRGQFTSS-KPKGDEATSELTA 244

Query: 249 SRRDEN--------PLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDL 303
           S    N        P    C +CG+++  TPMMRRGP GPR+LCNACGL WAN+G L+DL
Sbjct: 245 SDGSPNWGSVEGRPPSAAECHHCGINAKATPMMRRGPDGPRTLCNACGLMWANKGMLRDL 299

[Close]

BLAST of CmaCh05G005360 vs. ExPASy Swiss-Prot
Match: A2XKR7 (GATA transcription factor 18 OS=Oryza sativa subsp. indica OX=39946 GN=GATA18 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.6e-44
Identity = 103/191 (53.93%), Postives = 131/191 (68.59%), Query Frame = 0


Query: 130 SQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQ-RNAIDLPGRSS 189
           +QLTL F+G+VY+F++V+PEKVQAVLLLLG CE+  G  ++ L NQ + R   DL  R+ 
Sbjct: 79  NQLTLLFQGEVYVFESVTPEKVQAVLLLLGSCEMPPGLANMVLPNQRENRGYDDLLQRTD 138

Query: 190 QP-QRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDG---SYSHD 249
            P +R ASL RFR+KRKER FDKK+RY VR+EVALRMQR KGQF      +G   S   +
Sbjct: 139 IPAKRVASLIRFREKRKERNFDKKIRYAVRKEVALRMQRRKGQFAGRANMEGESLSPGCE 198

Query: 250 SVSE-SRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKR 309
             S+ S +D    E+ C NCG S  +TP MRRGP+GPR+LCNACGL WAN+GTL++  K 
Sbjct: 199 LASQGSGQDFLSRESKCQNCGTSEKMTPAMRRGPAGPRTLCNACGLMWANKGTLRNCPKA 258

Query: 310 SQDHRVTPAEQ 315
             +  V   EQ
Sbjct: 259 KVESSVVATEQ 269

[Close]

BLAST of CmaCh05G005360 vs. ExPASy Swiss-Prot
Match: Q8GXL7 (GATA transcription factor 24 OS=Arabidopsis thaliana OX=3702 GN=GATA24 PE=1 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 6.6e-44
Identity = 116/228 (50.88%), Postives = 141/228 (61.84%), Query Frame = 0


Query: 91  HSLEDGTGVGSMIEDLN---PDAVYVSAGDGSDMAVQRSDGSSQLTLSFRGQVYLFDAVS 150
           +S+ D    G M E +    P     SA +  ++  +  +   QLTLSF+GQVY+FD VS
Sbjct: 36  NSMMDDHADGGMDEGVETDIPSHPGNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVS 95

Query: 151 PEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAI----DLPGRSSQPQRAASLNRFRQKR 210
           PEKVQAVLLLLGG E+     +  L + +Q N +      P R S PQR ASL RFR+KR
Sbjct: 96  PEKVQAVLLLLGGREVPHTLPTT-LGSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKR 155

Query: 211 KERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPD---GSYSHDSVS------ESRRDEN 270
           K R FDK +RY VR+EVALRMQR KGQFTS+K  +   GS   D  S      E    + 
Sbjct: 156 KGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQK 215

Query: 271 PLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSK 303
           P E  C +CG S   TPMMRRGP GPR+LCNACGL WAN+GTL+DLSK
Sbjct: 216 P-EVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSK 261

[Close]

BLAST of CmaCh05G005360 vs. TAIR 10
Match: AT4G24470.1 (GATA-type zinc finger protein with TIFY domain )

HSP 1 Score: 247.3 bits (630), Expect = 1.8e-65
Identity = 140/271 (51.66%), Postives = 185/271 (68.27%), Query Frame = 0


Query: 102 MIEDLNPDAVYVSAG----DGSDMAVQRSDGS-----------SQLTLSFRGQVYLFDAV 161
           M E  +PD++Y +A     DGS +   RSDGS           +QLT+SFRGQVY+FDAV
Sbjct: 39  MEEIPHPDSIYGAASDLIPDGSQLVAHRSDGSELLVSRPPEGANQLTISFRGQVYVFDAV 98

Query: 162 SPEKVQAVLLLLGG-CELSSGQQSVDLV-NQNQRNAIDLPGRSSQPQRAASLNRFRQKRK 221
             +KV AVL LLGG  EL+ G Q ++L   QN    ++   R S PQRA SL+RFR+KR 
Sbjct: 99  GADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRN 158

Query: 222 ERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHDSVSESRRDENPLETSCTNCG 281
            RCF+KKVRYGVRQEVALRM RNKGQFTSSK  DG+Y+  +  +S +D+   E SCT+CG
Sbjct: 159 ARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDGAYNSGTDQDSAQDDAHPEISCTHCG 218

Query: 282 VSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPAEQCE----SDAA 341
           +SS  TPMMRRGPSGPR+LCNACGLFWANRGTL+DLSK+++++++   +  +    +DAA
Sbjct: 219 ISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEENQLALMKPDDGGSVADAA 278

Query: 342 KDFDCRRGN-HAPSNLVSFPNGDTSTLMAEH 351
            + +    +    +++VS  NGD S L+ +H
Sbjct: 279 NNLNTEAASVEEHTSMVSLANGDNSNLLGDH 309

[Close]

BLAST of CmaCh05G005360 vs. TAIR 10
Match: AT4G24470.2 (GATA-type zinc finger protein with TIFY domain )

HSP 1 Score: 247.3 bits (630), Expect = 1.8e-65
Identity = 140/271 (51.66%), Postives = 185/271 (68.27%), Query Frame = 0


Query: 102 MIEDLNPDAVYVSAG----DGSDMAVQRSDGS-----------SQLTLSFRGQVYLFDAV 161
           M E  +PD++Y +A     DGS +   RSDGS           +QLT+SFRGQVY+FDAV
Sbjct: 39  MEEIPHPDSIYGAASDLIPDGSQLVAHRSDGSELLVSRPPEGANQLTISFRGQVYVFDAV 98

Query: 162 SPEKVQAVLLLLGG-CELSSGQQSVDLV-NQNQRNAIDLPGRSSQPQRAASLNRFRQKRK 221
             +KV AVL LLGG  EL+ G Q ++L   QN    ++   R S PQRA SL+RFR+KR 
Sbjct: 99  GADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRN 158

Query: 222 ERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHDSVSESRRDENPLETSCTNCG 281
            RCF+KKVRYGVRQEVALRM RNKGQFTSSK  DG+Y+  +  +S +D+   E SCT+CG
Sbjct: 159 ARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDGAYNSGTDQDSAQDDAHPEISCTHCG 218

Query: 282 VSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPAEQCE----SDAA 341
           +SS  TPMMRRGPSGPR+LCNACGLFWANRGTL+DLSK+++++++   +  +    +DAA
Sbjct: 219 ISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEENQLALMKPDDGGSVADAA 278

Query: 342 KDFDCRRGN-HAPSNLVSFPNGDTSTLMAEH 351
            + +    +    +++VS  NGD S L+ +H
Sbjct: 279 NNLNTEAASVEEHTSMVSLANGDNSNLLGDH 309

[Close]

BLAST of CmaCh05G005360 vs. TAIR 10
Match: AT4G24470.3 (GATA-type zinc finger protein with TIFY domain )

HSP 1 Score: 245.4 bits (625), Expect = 7.0e-65
Identity = 141/279 (50.54%), Postives = 184/279 (65.95%), Query Frame = 0


Query: 102 MIEDLNPDAVYVSAG----DGSDMAVQRSDGS-----------SQLTLSFRGQVYLFDAV 161
           M E  +PD++Y +A     DGS +   RSDGS           +QLT+SFRGQVY+FDAV
Sbjct: 39  MEEIPHPDSIYGAASDLIPDGSQLVAHRSDGSELLVSRPPEGANQLTISFRGQVYVFDAV 98

Query: 162 SPEKVQAVLLLLGG-CELSSGQQSVDLV-NQNQRNAIDLPGRSSQPQRAASLNRFRQKRK 221
             +KV AVL LLGG  EL+ G Q ++L   QN    ++   R S PQRA SL+RFR+KR 
Sbjct: 99  GADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRN 158

Query: 222 ERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPDGSYSHDSVSESRRDENPLETSCTNCG 281
            RCF+KKVRYGVRQEVALRM RNKGQFTSSK  DG+Y+  +  +S +D+   E SCT+CG
Sbjct: 159 ARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTDGAYNSGTDQDSAQDDAHPEISCTHCG 218

Query: 282 VSSMVTPMMRRGPSGPRSLCNACGLFWANRGTLKDLSKRSQDHRVTPAEQCES------- 341
           +SS  TPMMRRGPSGPR+LCNACGLFWANRGTL+DLSK+++++++   +   S       
Sbjct: 219 ISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSKKTEENQLALMKPVSSYKYHPDD 278

Query: 342 -----DAAKDFDCRRGN-HAPSNLVSFPNGDTSTLMAEH 351
                DAA + +    +    +++VS  NGD S L+ +H
Sbjct: 279 GGSVADAANNLNTEAASVEEHTSMVSLANGDNSNLLGDH 317

[Close]

BLAST of CmaCh05G005360 vs. TAIR 10
Match: AT1G51600.1 (ZIM-LIKE 2 )

HSP 1 Score: 186.0 bits (471), Expect = 5.0e-47
Identity = 120/256 (46.88%), Postives = 153/256 (59.77%), Query Frame = 0


Query: 79  EPLDNRLVRYGAHSLEDGTGV----------GSMIEDL------NPDAVYVSAGDGSDMA 138
           +P+  +   +  H + +G+G+          G M E +      +P  V  + G+  D  
Sbjct: 18  DPMHVQFEHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRG 77

Query: 139 VQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCEL-SSGQQSVDLVNQNQRNAI 198
            ++ D   QLTLSF+GQVY+FD+V PEKVQAVLLLLGG EL  +    +   +QN R   
Sbjct: 78  SEQGD---QLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNR-VS 137

Query: 199 DLPG---RSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPD 258
            LPG   R S PQR ASL RFR+KRK R FDKK+RY VR+EVALRMQRNKGQFTS+K  +
Sbjct: 138 SLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNN 197

Query: 259 ----------GSYSHDSVSESRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACG 305
                     GS    ++  S       E SC +CG+    TPMMRRGP+GPR+LCNACG
Sbjct: 198 DEAASAGSSWGSNQTWAIESSEAQHQ--EISCRHCGIGEKSTPMMRRGPAGPRTLCNACG 257

[Close]

BLAST of CmaCh05G005360 vs. TAIR 10
Match: AT1G51600.2 (ZIM-LIKE 2 )

HSP 1 Score: 186.0 bits (471), Expect = 5.0e-47
Identity = 120/256 (46.88%), Postives = 153/256 (59.77%), Query Frame = 0


Query: 79  EPLDNRLVRYGAHSLEDGTGV----------GSMIEDL------NPDAVYVSAGDGSDMA 138
           +P+  +   +  H + +G+G+          G M E +      +P  V  + G+  D  
Sbjct: 18  DPMHVQFEHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSHPGNVTDNRGEVVDRG 77

Query: 139 VQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCEL-SSGQQSVDLVNQNQRNAI 198
            ++ D   QLTLSF+GQVY+FD+V PEKVQAVLLLLGG EL  +    +   +QN R   
Sbjct: 78  SEQGD---QLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNR-VS 137

Query: 199 DLPG---RSSQPQRAASLNRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKPD 258
            LPG   R S PQR ASL RFR+KRK R FDKK+RY VR+EVALRMQRNKGQFTS+K  +
Sbjct: 138 SLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNN 197

Query: 259 ----------GSYSHDSVSESRRDENPLETSCTNCGVSSMVTPMMRRGPSGPRSLCNACG 305
                     GS    ++  S       E SC +CG+    TPMMRRGP+GPR+LCNACG
Sbjct: 198 DEAASAGSSWGSNQTWAIESSEAQHQ--EISCRHCGIGEKSTPMMRRGPAGPRTLCNACG 257

The following BLAST results are available for this feature:

BLAST of CmaCh05G005360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LRH6	2.6e-64	51.66	GATA transcription factor 25 OS=Arabidopsis thaliana OX=3702 GN=GATA25 PE=1 SV=2	[more]
Q8H1G0	7.1e-46	46.88	GATA transcription factor 28 OS=Arabidopsis thaliana OX=3702 GN=GATA28 PE=1 SV=1	[more]
Q5Z4U5	9.3e-46	56.04	GATA transcription factor 20 OS=Oryza sativa subsp. japonica OX=39947 GN=GATA20 ...	[more]
A2XKR7	6.6e-44	53.93	GATA transcription factor 18 OS=Oryza sativa subsp. indica OX=39946 GN=GATA18 PE...	[more]
Q8GXL7	6.6e-44	50.88	GATA transcription factor 24 OS=Arabidopsis thaliana OX=3702 GN=GATA24 PE=1 SV=2	[more]

BLAST of CmaCh05G005360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24470.1	1.8e-65	51.66	GATA-type zinc finger protein with TIFY domain	[more]
AT4G24470.2	1.8e-65	51.66	GATA-type zinc finger protein with TIFY domain	[more]
AT4G24470.3	7.0e-65	50.54	GATA-type zinc finger protein with TIFY domain	[more]
AT1G51600.1	5.0e-47	46.88	ZIM-LIKE 2	[more]
AT1G51600.2	5.0e-47	46.88	ZIM-LIKE 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010399	Tify domain	SMART	SM00979	tify_2	coord: 125..160 e-value: 1.9E-11 score: 54.0
IPR010399	Tify domain	PFAM	PF06200	tify	coord: 127..159 e-value: 6.4E-12 score: 44.6
IPR010399	Tify domain	PROSITE	PS51320	TIFY	coord: 125..160 score: 14.282043
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 254..307 e-value: 3.3E-14 score: 63.2
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 260..296 e-value: 3.8E-15 score: 55.2
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 260..287
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 259..313 score: 10.343103
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 259..306 e-value: 2.28965E-15 score: 67.783
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 256..306 e-value: 4.2E-14 score: 53.9
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 192..234 e-value: 4.2E-15 score: 55.6
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 192..234 score: 12.510685
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 333..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 330..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..257
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..255
None	No IPR available	PANTHER	PTHR46125	GATA TRANSCRIPTION FACTOR 28	coord: 79..326
None	No IPR available	PANTHER	PTHR46125:SF20	GATA TRANSCRIPTION FACTOR 25	coord: 79..326
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 253..304

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G005360.1	CmaCh05G005360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007623	circadian rhythm
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0043565	sequence-specific DNA binding