Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTGTGGTTGCGATTCCTTATATGTCCATTCCCCATCTTCCTTCTTTAACCTAAAAAGGAACGCCCTTTTCATCCCCTTCATAGCCTCCTCCTCTATTCCGCCAGTCTTTTCAGGCCCCATCTTCCACAACGCAGCTCGACGCTAAACGACCATACACATTTCACTCTACAAGAACAAGAACAAGCCCCTCTGCTACCTACTACCCTTTTTGTTCTTATTCCTTTCAAAATCCATAATCGCCCGCTTCAGCCTTCTGCCCTCTGTTTTTCGCAATCCAAAACAGAGAAAAGGGGTTTCTGATGGCGCCATATTATCTTAAAACTCATCGGAATCGGAGCCACCGCCGCGGTGCCTCCGATGGGTTGCCGTTTATGAGCGATGAATGCTTGATTGAAATGGTCGAGAAGGAAACCCATCACTTGCCTCTTCATGGGTACCTCCTGAAGTTCCACAACGGCGACTTGGATGTTCGAGCAAGAACAGAGGCCGTCGATTGGATTAAAAAGGTGAGTATTGGTCTTGATTCAAAGATTTTCGAAGTTTATTTCTTCTGTTCTTCATTCATCAAAGCTTAATATCCAAACTCATTTCTTCATTTTTCTTGATCAACAGGTGAGTACTCATTTCAGATTTGGACCTCTCTGTATATACTTAGCCGTAAATTACTTGGATCGCTTCCTCTCCGCTTATGATCTACCCGTAAGGATGACGATCGCCTTCGGTTAATTCATAGTATCGATACGATTTGATGTCTAATTGTTTTTGTGCCATTTGCAGAAAGGCAGAGCTTGGACAATGCAGCTGCTTGCTGTGGCATGTATGTCCCTTGCAGCTAAATTGGAGGAGACAGAAGTCCCTCTCTCATTGGATTTACAGGTTCGACAATCGTTTCGATACTTGTTTGATCGAAAACGATTCACATTTCGCTAATAACAATCGGATTCAATCACAGGTGGGTGGATCAAAGTTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTGTTGACAACATTGGGATGGAGAATGCAAGCAGTTACCCCTTTCTCGTTTATCGATCATTACCTTCGAAAGATCCACTACGACGAATTCTCTCTCGAAATGTCAATCGAGCAATCGAGTCGTCTACTCTTGAACATAATACATGGTCCTATTTCGTTCTTGAACGCAATCATTATTGTGTCGATGAGTTTCGAAATGGTTTTGATCGATCTTTCTTATAGGTATCGAGTTCTTGGAATTCAAACCATCGGAGATTGCAGCAGCTGTGGCGATATCAGTCGCCGGGGAAGCTCAATCAGTGGACCCTGATAGAGCAATTCATCTTCTAATTCAGCAACTCCAAATGGTAATAATATAGATAAGAAGTTGATTATGTGTGGAACATGATCATAATCTGATGCATACATTTATGTGCAGGAAAGAGTTCTTAAGTGTCTTAAGTTAATCGATGACATGTTCGTCTGCGGGGGTGGGTTGGGGAAGGGCTCGAGAGCGTCGATGTCGTCGGAGCGACGGAGCCCGAGCAGGGTGTTGGAGATGACATGCTTAAGCTATACAAGCAATGACACAGCAGTTGTGTCGTGTGCAAACTCAAATGCTACAAAGAGGAGGAGATTGAACAGACCCTGTGAAGTAAATTTTTGATGTGGTAATTTTAAAATAACAGCGGTAATTTTAAAGGAACAGAAGGAGGAGGAAGTGGGAAGTGTTTGATTGTGAGATACACTTTCTTCTACGTGGCTAATTTGTATTGGCTGAGACCAAAAAAAGGAAAACCAAAGAAATAAAAAAAAATTAAATTGTCTTTTTTTTTTTTTTTAATATAAATTATGGAATTGTTTAATATATATTTTGTTGAGTCATTTAAATAGTGTCTTGTAAACGCAGTATGAGCAGAGAGTTGACAGCGCTTTGTGTTGACTATTGGTCTAACTATGACTGGGTTTTGTTCTTTAGCTTATGTGGTAAAACCCCATC
mRNA sequence
GTTTTGTGGTTGCGATTCCTTATATGTCCATTCCCCATCTTCCTTCTTTAACCTAAAAAGGAACGCCCTTTTCATCCCCTTCATAGCCTCCTCCTCTATTCCGCCAGTCTTTTCAGGCCCCATCTTCCACAACGCAGCTCGACGCTAAACGACCATACACATTTCACTCTACAAGAACAAGAACAAGCCCCTCTGCTACCTACTACCCTTTTTGTTCTTATTCCTTTCAAAATCCATAATCGCCCGCTTCAGCCTTCTGCCCTCTGTTTTTCGCAATCCAAAACAGAGAAAAGGGGTTTCTGATGGCGCCATATTATCTTAAAACTCATCGGAATCGGAGCCACCGCCGCGGTGCCTCCGATGGGTTGCCGTTTATGAGCGATGAATGCTTGATTGAAATGGTCGAGAAGGAAACCCATCACTTGCCTCTTCATGGGTACCTCCTGAAGTTCCACAACGGCGACTTGGATGTTCGAGCAAGAACAGAGGCCGTCGATTGGATTAAAAAGGTGAGTACTCATTTCAGATTTGGACCTCTCTGTATATACTTAGCCGTAAATTACTTGGATCGCTTCCTCTCCGCTTATGATCTACCCAAAGGCAGAGCTTGGACAATGCAGCTGCTTGCTGTGGCATGTATGTCCCTTGCAGCTAAATTGGAGGAGACAGAAGTCCCTCTCTCATTGGATTTACAGGTGGGTGGATCAAAGTTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTGTTGACAACATTGGGATGGAGAATGCAAGCAGTTACCCCTTTCTCGTTTATCGATCATTACCTTCGAAAGATCCACTACGACGAATTCTCTCTCGAAATGTCAATCGAGCAATCGAGTCGTCTACTCTTGAACATAATACATGGTATCGAGTTCTTGGAATTCAAACCATCGGAGATTGCAGCAGCTGTGGCGATATCAGTCGCCGGGGAAGCTCAATCAGTGGACCCTGATAGAGCAATTCATCTTCTAATTCAGCAACTCCAAATGGAAAGAGTTCTTAAGTGTCTTAAGTTAATCGATGACATGTTCGTCTGCGGGGGTGGGTTGGGGAAGGGCTCGAGAGCGTCGATGTCGTCGGAGCGACGGAGCCCGAGCAGGGTGTTGGAGATGACATGCTTAAGCTATACAAGCAATGACACAGCAGTTGTGTCGTGTGCAAACTCAAATGCTACAAAGAGGAGGAGATTGAACAGACCCTGTGAAGTAAATTTTTGATGTGGTAATTTTAAAATAACAGCGGTAATTTTAAAGGAACAGAAGGAGGAGGAAGTGGGAAGTGTTTGATTGTGAGATACACTTTCTTCTACGTGGCTAATTTGTATTGGCTGAGACCAAAAAAAGGAAAACCAAAGAAATAAAAAAAAATTAAATTGTCTTTTTTTTTTTTTTTAATATAAATTATGGAATTGTTTAATATATATTTTGTTGAGTCATTTAAATAGTGTCTTGTAAACGCAGTATGAGCAGAGAGTTGACAGCGCTTTGTGTTGACTATTGGTCTAACTATGACTGGGTTTTGTTCTTTAGCTTATGTGGTAAAACCCCATC
Coding sequence (CDS)
ATGGCGCCATATTATCTTAAAACTCATCGGAATCGGAGCCACCGCCGCGGTGCCTCCGATGGGTTGCCGTTTATGAGCGATGAATGCTTGATTGAAATGGTCGAGAAGGAAACCCATCACTTGCCTCTTCATGGGTACCTCCTGAAGTTCCACAACGGCGACTTGGATGTTCGAGCAAGAACAGAGGCCGTCGATTGGATTAAAAAGGTGAGTACTCATTTCAGATTTGGACCTCTCTGTATATACTTAGCCGTAAATTACTTGGATCGCTTCCTCTCCGCTTATGATCTACCCAAAGGCAGAGCTTGGACAATGCAGCTGCTTGCTGTGGCATGTATGTCCCTTGCAGCTAAATTGGAGGAGACAGAAGTCCCTCTCTCATTGGATTTACAGGTGGGTGGATCAAAGTTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTGTTGACAACATTGGGATGGAGAATGCAAGCAGTTACCCCTTTCTCGTTTATCGATCATTACCTTCGAAAGATCCACTACGACGAATTCTCTCTCGAAATGTCAATCGAGCAATCGAGTCGTCTACTCTTGAACATAATACATGGTATCGAGTTCTTGGAATTCAAACCATCGGAGATTGCAGCAGCTGTGGCGATATCAGTCGCCGGGGAAGCTCAATCAGTGGACCCTGATAGAGCAATTCATCTTCTAATTCAGCAACTCCAAATGGAAAGAGTTCTTAAGTGTCTTAAGTTAATCGATGACATGTTCGTCTGCGGGGGTGGGTTGGGGAAGGGCTCGAGAGCGTCGATGTCGTCGGAGCGACGGAGCCCGAGCAGGGTGTTGGAGATGACATGCTTAAGCTATACAAGCAATGACACAGCAGTTGTGTCGTGTGCAAACTCAAATGCTACAAAGAGGAGGAGATTGAACAGACCCTGTGAAGTAAATTTTTGA
Protein sequence
MAPYYLKTHRNRSHRRGASDGLPFMSDECLIEMVEKETHHLPLHGYLLKFHNGDLDVRARTEAVDWIKKVSTHFRFGPLCIYLAVNYLDRFLSAYDLPKGRAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKIHYDEFSLEMSIEQSSRLLLNIIHGIEFLEFKPSEIAAAVAISVAGEAQSVDPDRAIHLLIQQLQMERVLKCLKLIDDMFVCGGGLGKGSRASMSSERRSPSRVLEMTCLSYTSNDTAVVSCANSNATKRRRLNRPCEVNF
Homology
BLAST of CmaCh05G005300 vs. ExPASy Swiss-Prot
Match:
P42752 (Cyclin-D2-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD2-1 PE=1 SV=3)
HSP 1 Score: 252.7 bits (644), Expect = 5.6e-66
Identity = 143/301 (47.51%), Postives = 201/301 (66.78%), Query Frame = 0
Query: 25 MSDECLIEMVEKETHHLPLHGYLLKFHNGDLDVRARTEAVDWIKKVSTHFRFGPLCIYLA 84
+S++ + EM+ +E P Y+ + +GDLD+ R +A+DWI KV H+ FG LCI L+
Sbjct: 62 LSEDRIKEMLVREIEFCPGTDYVKRLLSGDLDLSVRNQALDWILKVCAHYHFGHLCICLS 121
Query: 85 VNYLDRFLSAYDLPKGRAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTI 144
+NYLDRFL++Y+LPK + W QLLAV+C+SLA+K+EET+VP +DLQV KFVFEA+TI
Sbjct: 122 MNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTI 181
Query: 145 ERMELLVLTTLGWRMQAVTPFSFIDHYLRKIHYDEFSLEMSIEQSSRLLLNIIHGIEFLE 204
+RMELLV+TTL WR+QA+TPFSFID+++ KI E I +SSR +LN IEFL+
Sbjct: 182 KRMELLVVTTLNWRLQALTPFSFIDYFVDKI--SGHVSENLIYRSSRFILNTTKAIEFLD 241
Query: 205 FKPSEI--AAAVAISVAGEAQSVDPDRAIHLLIQQLQMERVLKCLKLIDDMF----VCGG 264
F+PSEI AAAV++S++GE + +D ++A+ LI ++ ERV +CL L+ + V G
Sbjct: 242 FRPSEIAAAAAVSVSISGETECIDEEKALSSLI-YVKQERVKRCLNLMRSLTGEENVRGT 301
Query: 265 GLG-KGSRASMSSERRSPSRVLEMTCLSYTSNDTAVVSCANS------------NATKRR 307
L + +R ++ + SP VLE TCLSY S + V SC NS N+ KRR
Sbjct: 302 SLSQEQARVAVRAVPASPVGVLEATCLSYRSEERTVESCTNSSQSSPDNNNNNNNSNKRR 359
BLAST of CmaCh05G005300 vs. ExPASy Swiss-Prot
Match:
Q4KYM5 (Cyclin-D4-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD4-2 PE=2 SV=2)
HSP 1 Score: 248.8 bits (634), Expect = 8.0e-65
Identity = 142/299 (47.49%), Postives = 189/299 (63.21%), Query Frame = 0
Query: 20 DGLPFMSDECLIEMVEKETHHLPL--HGYLLKFHNGDLDVRARTEAVDWIKKVSTHFRFG 79
D P S+EC+ +VE+E H+P +G L+ GD+D+R R+EA+ WI +V T++ F
Sbjct: 68 DMFPRQSEECVASLVEREQAHMPRADYGERLRGGGGDVDLRVRSEAIGWIWEVYTYYNFS 127
Query: 80 PLCIYLAVNYLDRFLSAYDLPKGRAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKF 139
+ YLAVNYLDRFLS Y+LP+GR W QLL+VAC+S+AAK+EET VP LDLQ+G +F
Sbjct: 128 SVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRF 187
Query: 140 VFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKIHYDEFSLEMSIEQSSRLLLNII 199
+FE TI RMELLVLT L WRMQAVTPFS+ID++LRK++ + + +SS L+L I
Sbjct: 188 LFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSSELILRIA 247
Query: 200 HGIEFLEFKPSEIAAAVAISVAGEAQSVDPDRAIHLLIQQLQMERVLKCLKLIDDMFVCG 259
G FLEF+PSEIAAAVA +VAGEA V + I + RVL+C + I D
Sbjct: 248 AGTGFLEFRPSEIAAAVAATVAGEATGV-VEEDIAEAFTHVDKGRVLQCQEAIQDHHYSM 307
Query: 260 GGLG----------KGS-RASMSSERRSPSRVLEMTCLSYTSNDTAVVSCANSNATKRR 306
+ +GS AS SS SP VL+ CLSY S+DT + A+ +R+
Sbjct: 308 ATINTVQPKPASTRRGSASASSSSVPESPVAVLDAGCLSYKSDDTDAATIASHGGGRRK 365
BLAST of CmaCh05G005300 vs. ExPASy Swiss-Prot
Match:
Q6YXH8 (Cyclin-D4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD4-1 PE=2 SV=2)
HSP 1 Score: 243.4 bits (620), Expect = 3.4e-63
Identity = 138/276 (50.00%), Postives = 180/276 (65.22%), Query Frame = 0
Query: 26 SDECLIEMVEKETHHLPLHGYLLKFH----NGDLDVRARTEAVDWIKKVSTHFRFGPLCI 85
S+EC+ +VE E H+P Y + +GDLD+R R +A+DWI KV +++ F PL
Sbjct: 65 SEECVARLVETEADHMPREDYAERLRAGGGDGDLDLRVRMDAIDWIWKVHSYYSFAPLTA 124
Query: 86 YLAVNYLDRFLSAYDLPKGRAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEA 145
LAVNYLDRFLS Y LP G+ W QLLAVAC+SLAAK+EET+VP SLDLQVG ++VFEA
Sbjct: 125 CLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEA 184
Query: 146 RTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKIHYDEFSLEMSIEQSSRLLLNIIHGIE 205
+TI+RMELLVL+TL WRMQAVTPFS++D++LR+++ + S SS L+L I G E
Sbjct: 185 KTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSELILCIARGTE 244
Query: 206 FLEFKPSEIAAAVAISVAGEAQSVDPDRAIHLLIQQLQMERVLKCLKLIDDMFVCGGGLG 265
L F+PSEIAAAVA +V GE H + ER+ C ++I M +
Sbjct: 245 CLGFRPSEIAAAVAAAVVGEE---------HAAFSHVNKERMSHCQEVIQAMELIHPKPS 304
Query: 266 KGSRASMSSE-RRSPSRVLEMT-CLSYTSNDTAVVS 296
SR +SS RSP+ VL+ CLSY S+D+AV S
Sbjct: 305 SPSRVFVSSSIPRSPTGVLDAAGCLSYRSDDSAVAS 331
BLAST of CmaCh05G005300 vs. ExPASy Swiss-Prot
Match:
Q8LGA1 (Cyclin-D4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD4-1 PE=1 SV=2)
HSP 1 Score: 229.9 bits (585), Expect = 3.9e-59
Identity = 128/274 (46.72%), Postives = 184/274 (67.15%), Query Frame = 0
Query: 26 SDECLIEMVEKETHHLPLHGYLLKFHNGDLDVR-ARTEAVDWIKKVSTHFRFGPLCIYLA 85
S+E ++EMVEKE HLP Y+ + +GDLD+ R +A++WI K +FGPLC LA
Sbjct: 43 SEEIIMEMVEKEKQHLPSDDYIKRLRSGDLDLNVGRRDALNWIWKACEVHQFGPLCFCLA 102
Query: 86 VNYLDRFLSAYDLPKGRAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTI 145
+NYLDRFLS +DLP G+ W +QLLAVAC+SLAAK+EETEVP+ +DLQVG +FVFEA+++
Sbjct: 103 MNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSV 162
Query: 146 ERMELLVLTTLGWRMQAVTPFSFIDHYLRKI-HYDEFSLEMSIEQSSRLLLNIIHGIEFL 205
+RMELLVL L WR++A+TP S+I ++LRK+ D+ I +S +++ + GI+FL
Sbjct: 163 QRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKCDQEPSNTLISRSLQVIASTTKGIDFL 222
Query: 206 EFKPSEIAAAVAISVAGEAQSVDPDR-AIHLLIQQLQMERVLKCLKLI--DDMFVCGGGL 265
EF+PSE+AAAVA+SV+GE Q V D + L LQ ERV K ++I D +C
Sbjct: 223 EFRPSEVAAAVALSVSGELQRVHFDNSSFSPLFSLLQKERVKKIGEMIESDGSDLCS--- 282
Query: 266 GKGSRASMSSERRSPSRVLEMT--CLSYTSNDTA 293
++P+ VLE++ C S+ ++D++
Sbjct: 283 ------------QTPNGVLEVSACCFSFKTHDSS 301
BLAST of CmaCh05G005300 vs. ExPASy Swiss-Prot
Match:
Q0WQN9 (Cyclin-D4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCD4-2 PE=1 SV=2)
HSP 1 Score: 226.1 bits (575), Expect = 5.6e-58
Identity = 111/202 (54.95%), Postives = 147/202 (72.77%), Query Frame = 0
Query: 21 GLPFMSDECLIEMVEKETHHLPLHGYLLKFHNGDLDVRARTEAVDWIKKVSTHFRFGPLC 80
G P S+E + EM+EKE H P YL + NGDLD R +A+ WI K +FGPLC
Sbjct: 30 GFPLESEEIVREMIEKERQHSPRDDYLKRLRNGDLDFNVRIQALGWIWKACEELQFGPLC 89
Query: 81 IYLAVNYLDRFLSAYDLPKGRAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFE 140
I LA+NYLDRFLS +DLP G+AWT+QLLAVAC+SLAAK+EET VP + LQVG FVFE
Sbjct: 90 ICLAMNYLDRFLSVHDLPSGKAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAPMFVFE 149
Query: 141 ARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKIH-YDEFSLEMSIEQSSRLLLNIIHG 200
A++++RMELLVL L WR++AVTP S++ ++L KI+ YD+ + +S +++ + G
Sbjct: 150 AKSVQRMELLVLNVLRWRLRAVTPCSYVRYFLSKINGYDQEPHSRLVTRSLQVIASTTKG 209
Query: 201 IEFLEFKPSEIAAAVAISVAGE 222
I+FLEF+ SEIAAAVA+SV+GE
Sbjct: 210 IDFLEFRASEIAAAVALSVSGE 231
BLAST of CmaCh05G005300 vs. TAIR 10
Match:
AT2G22490.2 (Cyclin D2;1 )
HSP 1 Score: 256.9 bits (655), Expect = 2.1e-68
Identity = 144/301 (47.84%), Postives = 200/301 (66.45%), Query Frame = 0
Query: 25 MSDECLIEMVEKETHHLPLHGYLLKFHNGDLDVRARTEAVDWIKKVSTHFRFGPLCIYLA 84
+S++ + EM+ +E P Y+ + +GDLD+ R +A+DWI KV H+ FG LCI L+
Sbjct: 62 LSEDRIKEMLVREIEFCPGTDYVKRLLSGDLDLSVRNQALDWILKVCAHYHFGHLCICLS 121
Query: 85 VNYLDRFLSAYDLPKGRAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTI 144
+NYLDRFL++Y+LPK + W QLLAV+C+SLA+K+EET+VP +DLQV KFVFEA+TI
Sbjct: 122 MNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTI 181
Query: 145 ERMELLVLTTLGWRMQAVTPFSFIDHYLRKIHYDEFSLEMSIEQSSRLLLNIIHGIEFLE 204
+RMELLV+TTL WR+QA+TPFSFID+++ KI E I +SSR +LN IEFL+
Sbjct: 182 KRMELLVVTTLNWRLQALTPFSFIDYFVDKI--SGHVSENLIYRSSRFILNTTKAIEFLD 241
Query: 205 FKPSEI--AAAVAISVAGEAQSVDPDRAIHLLIQQLQMERVLKCLKLIDDMF----VCGG 264
F+PSEI AAAV++S++GE + +D ++A+ LI Q ERV +CL L+ + V G
Sbjct: 242 FRPSEIAAAAAVSVSISGETECIDEEKALSSLIYVKQQERVKRCLNLMRSLTGEENVRGT 301
Query: 265 GLG-KGSRASMSSERRSPSRVLEMTCLSYTSNDTAVVSCANS------------NATKRR 307
L + +R ++ + SP VLE TCLSY S + V SC NS N+ KRR
Sbjct: 302 SLSQEQARVAVRAVPASPVGVLEATCLSYRSEERTVESCTNSSQSSPDNNNNNNNSNKRR 360
BLAST of CmaCh05G005300 vs. TAIR 10
Match:
AT2G22490.1 (Cyclin D2;1 )
HSP 1 Score: 252.7 bits (644), Expect = 3.9e-67
Identity = 143/301 (47.51%), Postives = 201/301 (66.78%), Query Frame = 0
Query: 25 MSDECLIEMVEKETHHLPLHGYLLKFHNGDLDVRARTEAVDWIKKVSTHFRFGPLCIYLA 84
+S++ + EM+ +E P Y+ + +GDLD+ R +A+DWI KV H+ FG LCI L+
Sbjct: 62 LSEDRIKEMLVREIEFCPGTDYVKRLLSGDLDLSVRNQALDWILKVCAHYHFGHLCICLS 121
Query: 85 VNYLDRFLSAYDLPKGRAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTI 144
+NYLDRFL++Y+LPK + W QLLAV+C+SLA+K+EET+VP +DLQV KFVFEA+TI
Sbjct: 122 MNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTI 181
Query: 145 ERMELLVLTTLGWRMQAVTPFSFIDHYLRKIHYDEFSLEMSIEQSSRLLLNIIHGIEFLE 204
+RMELLV+TTL WR+QA+TPFSFID+++ KI E I +SSR +LN IEFL+
Sbjct: 182 KRMELLVVTTLNWRLQALTPFSFIDYFVDKI--SGHVSENLIYRSSRFILNTTKAIEFLD 241
Query: 205 FKPSEI--AAAVAISVAGEAQSVDPDRAIHLLIQQLQMERVLKCLKLIDDMF----VCGG 264
F+PSEI AAAV++S++GE + +D ++A+ LI ++ ERV +CL L+ + V G
Sbjct: 242 FRPSEIAAAAAVSVSISGETECIDEEKALSSLI-YVKQERVKRCLNLMRSLTGEENVRGT 301
Query: 265 GLG-KGSRASMSSERRSPSRVLEMTCLSYTSNDTAVVSCANS------------NATKRR 307
L + +R ++ + SP VLE TCLSY S + V SC NS N+ KRR
Sbjct: 302 SLSQEQARVAVRAVPASPVGVLEATCLSYRSEERTVESCTNSSQSSPDNNNNNNNSNKRR 359
BLAST of CmaCh05G005300 vs. TAIR 10
Match:
AT5G65420.1 (CYCLIN D4;1 )
HSP 1 Score: 229.9 bits (585), Expect = 2.7e-60
Identity = 128/274 (46.72%), Postives = 184/274 (67.15%), Query Frame = 0
Query: 26 SDECLIEMVEKETHHLPLHGYLLKFHNGDLDVR-ARTEAVDWIKKVSTHFRFGPLCIYLA 85
S+E ++EMVEKE HLP Y+ + +GDLD+ R +A++WI K +FGPLC LA
Sbjct: 43 SEEIIMEMVEKEKQHLPSDDYIKRLRSGDLDLNVGRRDALNWIWKACEVHQFGPLCFCLA 102
Query: 86 VNYLDRFLSAYDLPKGRAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFEARTI 145
+NYLDRFLS +DLP G+ W +QLLAVAC+SLAAK+EETEVP+ +DLQVG +FVFEA+++
Sbjct: 103 MNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSV 162
Query: 146 ERMELLVLTTLGWRMQAVTPFSFIDHYLRKI-HYDEFSLEMSIEQSSRLLLNIIHGIEFL 205
+RMELLVL L WR++A+TP S+I ++LRK+ D+ I +S +++ + GI+FL
Sbjct: 163 QRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKCDQEPSNTLISRSLQVIASTTKGIDFL 222
Query: 206 EFKPSEIAAAVAISVAGEAQSVDPDR-AIHLLIQQLQMERVLKCLKLI--DDMFVCGGGL 265
EF+PSE+AAAVA+SV+GE Q V D + L LQ ERV K ++I D +C
Sbjct: 223 EFRPSEVAAAVALSVSGELQRVHFDNSSFSPLFSLLQKERVKKIGEMIESDGSDLCS--- 282
Query: 266 GKGSRASMSSERRSPSRVLEMT--CLSYTSNDTA 293
++P+ VLE++ C S+ ++D++
Sbjct: 283 ------------QTPNGVLEVSACCFSFKTHDSS 301
BLAST of CmaCh05G005300 vs. TAIR 10
Match:
AT5G10440.1 (cyclin d4;2 )
HSP 1 Score: 226.1 bits (575), Expect = 4.0e-59
Identity = 111/202 (54.95%), Postives = 147/202 (72.77%), Query Frame = 0
Query: 21 GLPFMSDECLIEMVEKETHHLPLHGYLLKFHNGDLDVRARTEAVDWIKKVSTHFRFGPLC 80
G P S+E + EM+EKE H P YL + NGDLD R +A+ WI K +FGPLC
Sbjct: 30 GFPLESEEIVREMIEKERQHSPRDDYLKRLRNGDLDFNVRIQALGWIWKACEELQFGPLC 89
Query: 81 IYLAVNYLDRFLSAYDLPKGRAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGGSKFVFE 140
I LA+NYLDRFLS +DLP G+AWT+QLLAVAC+SLAAK+EET VP + LQVG FVFE
Sbjct: 90 ICLAMNYLDRFLSVHDLPSGKAWTVQLLAVACLSLAAKIEETNVPELMQLQVGAPMFVFE 149
Query: 141 ARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKIH-YDEFSLEMSIEQSSRLLLNIIHG 200
A++++RMELLVL L WR++AVTP S++ ++L KI+ YD+ + +S +++ + G
Sbjct: 150 AKSVQRMELLVLNVLRWRLRAVTPCSYVRYFLSKINGYDQEPHSRLVTRSLQVIASTTKG 209
Query: 201 IEFLEFKPSEIAAAVAISVAGE 222
I+FLEF+ SEIAAAVA+SV+GE
Sbjct: 210 IDFLEFRASEIAAAVALSVSGE 231
BLAST of CmaCh05G005300 vs. TAIR 10
Match:
AT5G65420.3 (CYCLIN D4;1 )
HSP 1 Score: 223.8 bits (569), Expect = 2.0e-58
Identity = 129/284 (45.42%), Postives = 185/284 (65.14%), Query Frame = 0
Query: 26 SDECLIEMVEKETHHLPLHGYLLKFHNGDLDVR-ARTEAVDWIKKVSTHFR--------- 85
S+E ++EMVEKE HLP Y+ + +GDLD+ R +A++WI K+ R
Sbjct: 43 SEEIIMEMVEKEKQHLPSDDYIKRLRSGDLDLNVGRRDALNWIWKIRGLCRTDREACEVH 102
Query: 86 -FGPLCIYLAVNYLDRFLSAYDLPKGRAWTMQLLAVACMSLAAKLEETEVPLSLDLQVGG 145
FGPLC LA+NYLDRFLS +DLP G+ W +QLLAVAC+SLAAK+EETEVP+ +DLQVG
Sbjct: 103 QFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGD 162
Query: 146 SKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKI-HYDEFSLEMSIEQSSRLL 205
+FVFEA++++RMELLVL L WR++A+TP S+I ++LRK+ D+ I +S +++
Sbjct: 163 PQFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKCDQEPSNTLISRSLQVI 222
Query: 206 LNIIHGIEFLEFKPSEIAAAVAISVAGEAQSVDPDR-AIHLLIQQLQMERVLKCLKLI-- 265
+ GI+FLEF+PSE+AAAVA+SV+GE Q V D + L LQ ERV K ++I
Sbjct: 223 ASTTKGIDFLEFRPSEVAAAVALSVSGELQRVHFDNSSFSPLFSLLQKERVKKIGEMIES 282
Query: 266 DDMFVCGGGLGKGSRASMSSERRSPSRVLEMT--CLSYTSNDTA 293
D +C ++P+ VLE++ C S+ ++D++
Sbjct: 283 DGSDLCS---------------QTPNGVLEVSACCFSFKTHDSS 311
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P42752 | 5.6e-66 | 47.51 | Cyclin-D2-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD2-1 PE=1 SV=3 | [more] |
Q4KYM5 | 8.0e-65 | 47.49 | Cyclin-D4-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD4-2 PE=2 SV=2 | [more] |
Q6YXH8 | 3.4e-63 | 50.00 | Cyclin-D4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCD4-1 PE=2 SV=2 | [more] |
Q8LGA1 | 3.9e-59 | 46.72 | Cyclin-D4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCD4-1 PE=1 SV=2 | [more] |
Q0WQN9 | 5.6e-58 | 54.95 | Cyclin-D4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCD4-2 PE=1 SV=2 | [more] |