CmaCh05G005160 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G005160
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRING-H2 finger protein ATL34-like
LocationCma_Chr05: 2466092 .. 2469264 (+)
RNA-Seq ExpressionCmaCh05G005160
SyntenyCmaCh05G005160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTCTCCACCCCTCCGCCGCTGCCATGTCCTCACCGGCTTCCTTATCCATTCCATTCTCCTCTCCCACATCTCTCTCGCCGCCGCCCAATCTGGAGGACCCGCTGTTCCCAGTCCGCCGGAGATGTACTCTTTCAAACAGACAATCAGCAAACGAATGGCCGTCGTTTTGATTGTTCTCGTTTGCTTCTTTATCGTTCTTGCCCTCCTCTCCGTTTACACCCGCCAGTGCAACGATCAACGTTTTGGCGGCCACCTTCTCCTCCCCACAGCCGCAGAAGGAATCAACGGCCGACCAAGAAGGGCGGCGCGTGGTCTCGATGCGGCTGTTATAGCTTCTTTCCCAACATTCGTGTATTCCAACGTAAAGGGTCTCAAAATTGGGAAAGGCGCATTGGAATGCGCCGTTTGTTTATCCGAATTCGAAGATGATAATACGCTGCGTTTGTTGCCGAAATGTAGCCATGTCTTCCACTCCGATTGCATCGACGCTTGGTTGGTGTCTCACTCTACCTGCCCTGTTTGCCGCGCCAGTCTCGTCCCCAAACCCGGCGACATCTCCTTTGCTGCTCTGCTCGATTCCGATTCAAGAATCCACGGCGATGACGGAAATCGAGTGGCCGGATTGGAAAATTGTCAAGTGGGTATACGAATTCCAGAGGGGAATCCCCAAAATCAGGGATTGAATCAGAACGGTCCAATTAGGTCGCGATCGACGGGATGGAGATTGATCGGACTGTTCCCTCGATCCCACTCGACGGGACACTCGCTGGTTCAAATAGGGGCGGATTACGAAAGGTTTACTCTGAGATTGCCGACGGAGGTGAGAAGTGAGCTGTTGAATTCGAATTTGAATCGGGCGAGGAGCTGCGTGGCGTTGCCGAGGGTGCAGAGTTCGAGACAGGGGTATCGTAGTGAATTGGGGAAAAATGGGTTTGTGGGCAATCGAAGCCGCAGTGGGCGTTCGGAGTGGTGGACATTTTTCCCGGCGACGCCGTTGTTCAGAAGGGAGGGTTCTAGAAATGATGCAAATGTGAATGTGAATGGAGACGGCGGTGGACGGCCGTTTGTACGATTGCGAGATGATGGACATGGTCAAAGTCAACAATAACGTTGACGGTGTTGGCTTCTGGACATTTGGGCCGATGTGGGCTTTTGTGTGATTTTCTTAAATTTAATTTTATAAAGAAAAAGAAAATTCGAATTTCTACGGGAAGAAGGGTAAACGGTCAAAAGTGATTAGTTGTGGCGCGTGGGACACACGCGTGTATAGAAAGTGTTGATATTTTGTTAATAAATTAGGAAAAAGTATTTACATATGTAAAATTAAGTGGTTATTTGTTGAAAATTATTCATAATTTTTTTTAATTATTTGAAAATTATTTGTTTTCATTTTAATAGAAATTATAGCGGAAGTAAAATTAGCACCGTAACAACCCAAGATCACTACCGACAGATATTGTCTTTTTTGAGCTTTTTCTTTCGAGCTTCTCCTTAAGGCACCAGACAATATGCCAGTGGAGACGTTGTGCCTTGAATGGAGGTGGATTATGAGATTTCACATCAATTGGAGAGGGGAACGACTGTCAGCAAAGACATTAGGCTTTGAAGGGGGGTGAATTGTGAGATCTCACCTTGTTAAGAATGAGAATTATAATTGGGATCGAAGGTGTGTGATCTTCATTGATATTCATAACGTTTAAATAAGATACAAGCTACCAACAATGGTCAAATAAACAAAAAAAAAATGATTATAAATAACGATATTATGCTCTATAAAACACGATTTCGATGGTAGGATAAGAAAAGAATAGACAATTGGTATAATTTGGAATTAGAATGTCTCTGAAAAAAGAATGTGATTATATTTATATATTTAATATTATTTGTGGCGCCGACAAACTGACCAAAAATTATGGAAATTACCTATAAACTTCCGAATTTAGAAGAATGAAACATCCAAGAAAAGAATTTAAAAAAGAAAAAAAATACAACATTGGTTACCGTGTGACAATAATTCATCAATGTGAATCATTATTTTAACGTTTTGCTTTCCAAATATATAAAATTAAAAAAAAGAAAAGAAAAAAAAAAAGAGTCAAAGTTGGATCCTTTTATTTGATCGCCTTCCGTTTCTCAGTTGTTATTGATCGATCGTATGAACAATATGCAATGGCCATAGATCAGACCAAGAAGCTCAAGAATCTCATCGACGCTTTCAAAGATCAGGCCTCAATAATCAAAGCCACTTTCTCAATTCATCGCCGTTCATCTTCCATTAAAGTCGCCGTCGTCCGTGCCACCACGCACGGCGCCAGAAACCCACCTTCCGACGCCCGACTCGCTGCTCTGTTAGCCCTTGGAAATGACTTCCGTTCCTCCACGGCATTTGTCTGCATCCAAGCCTTGATGGAACGGCTTCATACAACCACGAGCGCCGCCGTGGCCATGAAATCGCTTTTCACTCTGCATATAATTGTAATTCGAGGTCCGTTTAATCTGAGGGATGAGGTGGCGTTTTCCCCTTATTACGGAGGGCGAAATTTTCTAAATTTGTCCGCGTTTCGCGACGTATCGGACTCGGAGATGAGCGAGTTGTCGTGTTGGGTGAGATGGTATGCAGGGGTTGTGGAACATATCAGGAAATTGGATTGGATTCTGTATTTTCGTTCAAGAAATCCCGAAATTGTGGAAGGTAAAGACAGGAAGATTCCCGAATTGTTGGAGGAATTGGATGTTCTTTTGGGTTTTTTAGAGCGGATTTCGGAAGTTCCCGAGTCGTTGCATGTCCAGAAATCGGATTTGGTTTACGAGGTTGTGAGATTGGTTCTGGAGAGTTACCGGTTGGTGCAGAGGGAGATTCGGGTCCGAGTTAACGAAATCGGAAACAGAGTCGAGTGGCTGAGTCGGGACGAGTTAACCGAGTCGGTGGAGATTCTGACTCGGATGGAAAATTGCAGAAGGAAAGTGAGTGTGTTGTTTGTGAACAGAGGGAAGAACGATGAGTTGTGGGAACTGGTGACGTGTACGAAAGGGAAACTGGTGGAGCGGAGGAGGAGGATGACGACAATGACCGAGTCGACTCGGTTGTGGAACCCGTTTGTTGAACCGGGTTCATTGAGACCGTTGGGCCCGGCTTTGCTTCCACTGACCGTTTCAACGGTAGGATAG

mRNA sequence

ATGACCTCTCCACCCCTCCGCCGCTGCCATGTCCTCACCGGCTTCCTTATCCATTCCATTCTCCTCTCCCACATCTCTCTCGCCGCCGCCCAATCTGGAGGACCCGCTGTTCCCAGTCCGCCGGAGATGTACTCTTTCAAACAGACAATCAGCAAACGAATGGCCGTCGTTTTGATTGTTCTCGTTTGCTTCTTTATCGTTCTTGCCCTCCTCTCCGTTTACACCCGCCAGTGCAACGATCAACGTTTTGGCGGCCACCTTCTCCTCCCCACAGCCGCAGAAGGAATCAACGGCCGACCAAGAAGGGCGGCGCGTGGTCTCGATGCGGCTGTTATAGCTTCTTTCCCAACATTCGTGTATTCCAACGTAAAGGGTCTCAAAATTGGGAAAGGCGCATTGGAATGCGCCGTTTGTTTATCCGAATTCGAAGATGATAATACGCTGCGTTTGTTGCCGAAATGTAGCCATGTCTTCCACTCCGATTGCATCGACGCTTGGTTGGTGTCTCACTCTACCTGCCCTGTTTGCCGCGCCAGTCTCGTCCCCAAACCCGGCGACATCTCCTTTGCTGCTCTGCTCGATTCCGATTCAAGAATCCACGGCGATGACGGAAATCGAGTGGCCGGATTGGAAAATTGTCAAGTGGGTATACGAATTCCAGAGGGGAATCCCCAAAATCAGGGATTGAATCAGAACGGTCCAATTAGGTCGCGATCGACGGGATGGAGATTGATCGGACTGTTCCCTCGATCCCACTCGACGGGACACTCGCTGGTTCAAATAGGGGCGGATTACGAAAGGTTTACTCTGAGATTGCCGACGGAGGTGAGAAGTGAGCTGTTGAATTCGAATTTGAATCGGGCGAGGAGCTGCGTGGCGTTGCCGAGGGTGCAGAGTTCGAGACAGGGGTATCGTAGTGAATTGGGGAAAAATGGGTTTGTGGGCAATCGAAGCCGCAGTGGGCGTTCGGAGTGGTGGACATTTTTCCCGGCGACGCCGTTGTTCAGAAGGGAGGGTTCTAGAAATGATGCAAATGTGAATGTGAATGGAGACGGCGGTGGACGGCCGTTTGTACGATTGCGAGATGATGGACATGTTGTTATTGATCGATCGTATGAACAATATGCAATGGCCATAGATCAGACCAAGAAGCTCAAGAATCTCATCGACGCTTTCAAAGATCAGGCCTCAATAATCAAAGCCACTTTCTCAATTCATCGCCGTTCATCTTCCATTAAAGTCGCCGTCGTCCGTGCCACCACGCACGGCGCCAGAAACCCACCTTCCGACGCCCGACTCGCTGCTCTGTTAGCCCTTGGAAATGACTTCCGTTCCTCCACGGCATTTGTCTGCATCCAAGCCTTGATGGAACGGCTTCATACAACCACGAGCGCCGCCGTGGCCATGAAATCGCTTTTCACTCTGCATATAATTGTAATTCGAGGTCCGTTTAATCTGAGGGATGAGGTGGCGTTTTCCCCTTATTACGGAGGGCGAAATTTTCTAAATTTGTCCGCGTTTCGCGACGTATCGGACTCGGAGATGAGCGAGTTGTCGTGTTGGGTGAGATGGTATGCAGGGGTTGTGGAACATATCAGGAAATTGGATTGGATTCTGTATTTTCGTTCAAGAAATCCCGAAATTGTGGAAGGTAAAGACAGGAAGATTCCCGAATTGTTGGAGGAATTGGATGTTCTTTTGGGTTTTTTAGAGCGGATTTCGGAAGTTCCCGAGTCGTTGCATGTCCAGAAATCGGATTTGGTTTACGAGGTTGTGAGATTGGTTCTGGAGAGTTACCGGTTGGTGCAGAGGGAGATTCGGGTCCGAGTTAACGAAATCGGAAACAGAGTCGAGTGGCTGAGTCGGGACGAGTTAACCGAGTCGGTGGAGATTCTGACTCGGATGGAAAATTGCAGAAGGAAAGTGAGTGTGTTGTTTGTGAACAGAGGGAAGAACGATGAGTTGTGGGAACTGGTGACGTGTACGAAAGGGAAACTGGTGGAGCGGAGGAGGAGGATGACGACAATGACCGAGTCGACTCGGTTGTGGAACCCGTTTGTTGAACCGGGTTCATTGAGACCGTTGGGCCCGGCTTTGCTTCCACTGACCGTTTCAACGGTAGGATAG

Coding sequence (CDS)

ATGACCTCTCCACCCCTCCGCCGCTGCCATGTCCTCACCGGCTTCCTTATCCATTCCATTCTCCTCTCCCACATCTCTCTCGCCGCCGCCCAATCTGGAGGACCCGCTGTTCCCAGTCCGCCGGAGATGTACTCTTTCAAACAGACAATCAGCAAACGAATGGCCGTCGTTTTGATTGTTCTCGTTTGCTTCTTTATCGTTCTTGCCCTCCTCTCCGTTTACACCCGCCAGTGCAACGATCAACGTTTTGGCGGCCACCTTCTCCTCCCCACAGCCGCAGAAGGAATCAACGGCCGACCAAGAAGGGCGGCGCGTGGTCTCGATGCGGCTGTTATAGCTTCTTTCCCAACATTCGTGTATTCCAACGTAAAGGGTCTCAAAATTGGGAAAGGCGCATTGGAATGCGCCGTTTGTTTATCCGAATTCGAAGATGATAATACGCTGCGTTTGTTGCCGAAATGTAGCCATGTCTTCCACTCCGATTGCATCGACGCTTGGTTGGTGTCTCACTCTACCTGCCCTGTTTGCCGCGCCAGTCTCGTCCCCAAACCCGGCGACATCTCCTTTGCTGCTCTGCTCGATTCCGATTCAAGAATCCACGGCGATGACGGAAATCGAGTGGCCGGATTGGAAAATTGTCAAGTGGGTATACGAATTCCAGAGGGGAATCCCCAAAATCAGGGATTGAATCAGAACGGTCCAATTAGGTCGCGATCGACGGGATGGAGATTGATCGGACTGTTCCCTCGATCCCACTCGACGGGACACTCGCTGGTTCAAATAGGGGCGGATTACGAAAGGTTTACTCTGAGATTGCCGACGGAGGTGAGAAGTGAGCTGTTGAATTCGAATTTGAATCGGGCGAGGAGCTGCGTGGCGTTGCCGAGGGTGCAGAGTTCGAGACAGGGGTATCGTAGTGAATTGGGGAAAAATGGGTTTGTGGGCAATCGAAGCCGCAGTGGGCGTTCGGAGTGGTGGACATTTTTCCCGGCGACGCCGTTGTTCAGAAGGGAGGGTTCTAGAAATGATGCAAATGTGAATGTGAATGGAGACGGCGGTGGACGGCCGTTTGTACGATTGCGAGATGATGGACATGTTGTTATTGATCGATCGTATGAACAATATGCAATGGCCATAGATCAGACCAAGAAGCTCAAGAATCTCATCGACGCTTTCAAAGATCAGGCCTCAATAATCAAAGCCACTTTCTCAATTCATCGCCGTTCATCTTCCATTAAAGTCGCCGTCGTCCGTGCCACCACGCACGGCGCCAGAAACCCACCTTCCGACGCCCGACTCGCTGCTCTGTTAGCCCTTGGAAATGACTTCCGTTCCTCCACGGCATTTGTCTGCATCCAAGCCTTGATGGAACGGCTTCATACAACCACGAGCGCCGCCGTGGCCATGAAATCGCTTTTCACTCTGCATATAATTGTAATTCGAGGTCCGTTTAATCTGAGGGATGAGGTGGCGTTTTCCCCTTATTACGGAGGGCGAAATTTTCTAAATTTGTCCGCGTTTCGCGACGTATCGGACTCGGAGATGAGCGAGTTGTCGTGTTGGGTGAGATGGTATGCAGGGGTTGTGGAACATATCAGGAAATTGGATTGGATTCTGTATTTTCGTTCAAGAAATCCCGAAATTGTGGAAGGTAAAGACAGGAAGATTCCCGAATTGTTGGAGGAATTGGATGTTCTTTTGGGTTTTTTAGAGCGGATTTCGGAAGTTCCCGAGTCGTTGCATGTCCAGAAATCGGATTTGGTTTACGAGGTTGTGAGATTGGTTCTGGAGAGTTACCGGTTGGTGCAGAGGGAGATTCGGGTCCGAGTTAACGAAATCGGAAACAGAGTCGAGTGGCTGAGTCGGGACGAGTTAACCGAGTCGGTGGAGATTCTGACTCGGATGGAAAATTGCAGAAGGAAAGTGAGTGTGTTGTTTGTGAACAGAGGGAAGAACGATGAGTTGTGGGAACTGGTGACGTGTACGAAAGGGAAACTGGTGGAGCGGAGGAGGAGGATGACGACAATGACCGAGTCGACTCGGTTGTGGAACCCGTTTGTTGAACCGGGTTCATTGAGACCGTTGGGCCCGGCTTTGCTTCCACTGACCGTTTCAACGGTAGGATAG

Protein sequence

MTSPPLRRCHVLTGFLIHSILLSHISLAAAQSGGPAVPSPPEMYSFKQTISKRMAVVLIVLVCFFIVLALLSVYTRQCNDQRFGGHLLLPTAAEGINGRPRRAARGLDAAVIASFPTFVYSNVKGLKIGKGALECAVCLSEFEDDNTLRLLPKCSHVFHSDCIDAWLVSHSTCPVCRASLVPKPGDISFAALLDSDSRIHGDDGNRVAGLENCQVGIRIPEGNPQNQGLNQNGPIRSRSTGWRLIGLFPRSHSTGHSLVQIGADYERFTLRLPTEVRSELLNSNLNRARSCVALPRVQSSRQGYRSELGKNGFVGNRSRSGRSEWWTFFPATPLFRREGSRNDANVNVNGDGGGRPFVRLRDDGHVVIDRSYEQYAMAIDQTKKLKNLIDAFKDQASIIKATFSIHRRSSSIKVAVVRATTHGARNPPSDARLAALLALGNDFRSSTAFVCIQALMERLHTTTSAAVAMKSLFTLHIIVIRGPFNLRDEVAFSPYYGGRNFLNLSAFRDVSDSEMSELSCWVRWYAGVVEHIRKLDWILYFRSRNPEIVEGKDRKIPELLEELDVLLGFLERISEVPESLHVQKSDLVYEVVRLVLESYRLVQREIRVRVNEIGNRVEWLSRDELTESVEILTRMENCRRKVSVLFVNRGKNDELWELVTCTKGKLVERRRRMTTMTESTRLWNPFVEPGSLRPLGPALLPLTVSTVG
Homology
BLAST of CmaCh05G005160 vs. ExPASy Swiss-Prot
Match: Q84W40 (RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2)

HSP 1 Score: 211.5 bits (537), Expect = 3.2e-53
Identity = 136/310 (43.87%), Postives = 184/310 (59.35%), Query Frame = 0

Query: 54  MAVVLIVLVCFFIVLALLSVYTRQCNDQRFGGHLLLPTAAEGINGRPRRAARGLDAAVIA 113
           MA+++IVLV  F  L   SVY R+C ++  G     P  A       R+ ARGLDA++I 
Sbjct: 63  MAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIE 122

Query: 114 SFPTFVYSNVKGLKIGKGALECAVCLSEFEDDNTLRLLPKCSHVFHSDCIDAWLVSHSTC 173
           +FPTF YS VK L+IGK ALEC+VCL+EFEDD TLRL+PKC HVFH  CIDAWL SH+TC
Sbjct: 123 TFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTC 182

Query: 174 PVCRASLVPKPGDISFAAL----LDSDSRIHGDDGNRVAGLENCQVGIRIPEGNPQNQGL 233
           P+CRA L+P PG+ S  ++    L +D      +G+R+  L +     R+ E        
Sbjct: 183 PLCRADLIPVPGE-SIVSIQIPGLVNDPPGSDPNGDRIRSLGSPDA--RLIESVALT--C 242

Query: 234 NQNGPIRSRSTGWRLIGLFPRSHSTGHSLVQIGADYERFTLRLPTEVRSELLNSNLNRAR 293
           NQ+ P RS STGW L G+F  S  TG    Q   + +RFTLRLP ++ ++L+N NL++  
Sbjct: 243 NQSMPRRSMSTGWNLAGMFTNSDRTG----QHSENLDRFTLRLPQDIHNKLVNPNLSKVH 302

Query: 294 SCVALPRVQSSRQGYRS-ELG--KNGFVGNR-SRSGRSEWWTFFPATPLFRREGSRNDAN 353
             VALP+V SS +GYR+  LG  +N F   R  + GR +    F  TP +R        +
Sbjct: 303 --VALPQVMSSTRGYRTGSLGSERNYFYYERFDQDGRLDRRP-FSITPPYRTSSIN---H 357

Query: 354 VNVNGDGGGR 356
           ++  G GG +
Sbjct: 363 MSPGGSGGDK 357

BLAST of CmaCh05G005160 vs. ExPASy Swiss-Prot
Match: O64763 (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 5.6e-50
Identity = 142/373 (38.07%), Postives = 199/373 (53.35%), Query Frame = 0

Query: 15  FLIHSILLSHISLAAAQSGGPAVPSPPEMYSFKQTISKRMAVVLIVLVCFFIVLALLSVY 74
           FL+  +LL  +     Q+      +PP     K      + + ++ LV FF+V    S++
Sbjct: 18  FLLLLLLLQSVPYGFGQT----QTTPPGTTKTKPNDPVVVVITVLFLVIFFMVFG--SIF 77

Query: 75  TRQCNDQRFGGHLLLPTAAEGING--RPRR-AARGLDAAVIASFPTFVYSNVKGLKIGKG 134
            R+ N Q     +   T A+  +   R RR  ARGLDA  I +FPTF+YS VK ++IGKG
Sbjct: 78  CRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKG 137

Query: 135 ALECAVCLSEFEDDNTLRLLPKCSHVFHSDCIDAWLVSHSTCPVCRASLV-PKPGDISFA 194
            +ECAVCL EFEDD TLRL+P C HVFH+DC+D WL  HSTCP+CRA LV  + GD    
Sbjct: 138 GVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQQGDDD-- 197

Query: 195 ALLDSDSRIHGDDGNRVAGLENCQVGIRIPEGNPQNQGL----NQNGPIRSRSTG---WR 254
              DS     G D   ++   + + G+ +   +          N N   RS+STG   W+
Sbjct: 198 ---DSTESYSGTDPGTISSSTDPERGMVLESSDAHLLDAVTWSNSNITPRSKSTGLSSWQ 257

Query: 255 LIG-LFPRSHSTGHSLVQIGADYERFTLRLPTEVRSELLNSNLNRARSCVALPRVQSSRQ 314
           + G LFPRSHSTGHSL+Q   + +RFTLRLP +VR +L+ ++       + LP+ +SSR 
Sbjct: 258 ITGILFPRSHSTGHSLIQPAGNLDRFTLRLPDDVRRQLMKTSRTMGHVAL-LPQARSSRS 317

Query: 315 GYRS-ELG--KNGFVGNRSRSGRSEWWTFFPATPLFRREGSRN----DA--NVNVNGDGG 367
           GYRS  +G  ++ F   R  +  +        +  FR    R+    DA  N+  + + G
Sbjct: 318 GYRSGSVGSERSAFPYGRKSNNNNRRLHSLSFSFSFRSGSVRSTFSGDAPKNLPTSIEAG 377

BLAST of CmaCh05G005160 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 8.1e-49
Identity = 138/349 (39.54%), Postives = 186/349 (53.30%), Query Frame = 0

Query: 16  LIHSILLSHISLAAAQSGGPAVPSPPEMYSFKQTISKRMAVVLIVLVCFFIVLALLSVYT 75
           ++  ++LS   LAA+QS  P   + P  Y     +S  MAV++++L+     +   S+Y 
Sbjct: 15  IVFLLILSSADLAASQS-QPGPTNQPYNYG---RLSPAMAVIVVILIAALFFMGFFSIYF 74

Query: 76  RQCNDQRFGGHLLLPTAAEGINGRPRRAARGLDAAVIASFPTFVYSNVKGLKIGKGALEC 135
           R C+     G  + P            AARGLD +V+ +FPTF+YS+VK  K+GKG LEC
Sbjct: 75  RHCSGVPDAG--VSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELEC 134

Query: 136 AVCLSEFEDDNTLRLLPKCSHVFHSDCIDAWLVSHSTCPVCRASLVPKPGDISFAALLDS 195
           A+CL+EFEDD TLRLLPKC HVFH  CIDAWL +H TCPVCRA+L  +        + + 
Sbjct: 135 AICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQ--------VAEG 194

Query: 196 DSRIHGDDGNRVAGLENCQVGIRIPEGNPQNQGLNQNGPIRSRSTGWRLIGL-------- 255
           +S    + G     LE  QV +  PE  P          + S     RL G+        
Sbjct: 195 ES---VEPGGTEPDLELQQVVVN-PE--PVVTAPVPEQLVTSEVDSRRLPGVPVDLKRVK 254

Query: 256 FPRSHSTGHSLVQIGADYERFTLRLPTEVRSELLNS-NLNRARSCVALPRVQSSRQGYRS 315
           F RSH+TGHS+VQ G   ERFTLRLP +VR  ++    LNR  S + LPR  SSR+G   
Sbjct: 255 FSRSHTTGHSVVQPGECTERFTLRLPEDVRKRIMKDWKLNRTNSLLVLPRGGSSRRGKPI 314

Query: 316 ELGKNGFVGNRSRSGRSEWWTFFPATPLFRREGSRNDANVNVNGDGGGR 356
           +         RSR+ RS+ W  F  TP F    SR+D ++ +   G  R
Sbjct: 315 D---------RSRA-RSDRW-LFRKTPSFLWR-SRDDGSIRLGATGSVR 331

BLAST of CmaCh05G005160 vs. ExPASy Swiss-Prot
Match: Q9M0R5 (Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.4e-48
Identity = 142/339 (41.89%), Postives = 184/339 (54.28%), Query Frame = 0

Query: 45  SFKQTISKRMAVVLIVLVCFFIVLALLS-----VYTRQCNDQRFGGHLLLPTAAEGINGR 104
           S +QT     +++ IV++  FI L ++S     ++ R+               A G +  
Sbjct: 40  SIRQTNLSADSIIAIVVLAIFISLGMVSCCLHCIFYRE------------EIGAAGQDVL 99

Query: 105 PRRAARGLDAAVIASFPTFVYSNVKGLKIGKGALECAVCLSEFEDDNTLRLLPKCSHVFH 164
             RA RGL+  VI SFPTF+YS VKGLKIGKG +ECA+CLSEFED  TLR +P CSH FH
Sbjct: 100 HSRARRGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFH 159

Query: 165 SDCIDAWLVSHSTCPVCRASLVPKPGDISFAALLDSDSRIHGDDGNRVAGLENCQVGIRI 224
           ++CID WL S STCPVCRA+L  KPG+ S+  L                   N  V    
Sbjct: 160 ANCIDVWLSSWSTCPVCRANLSLKPGE-SYPYL-------------------NMDVETGG 219

Query: 225 PEGNPQNQGLNQNG-PIRSRSTG----WRLIGLF-PRSHSTGHSLV-QIGADYERFTLRL 284
            +  P  + L  N    RSRSTG    WR+  +F PRSHSTGHSLV Q+G + +RFTL+L
Sbjct: 220 VQKLPNERSLTGNSVTTRSRSTGLLSSWRMAEIFVPRSHSTGHSLVQQLGENLDRFTLQL 279

Query: 285 PTEVRSELLNSNLNRARSCVALPRVQSSRQGYRS-ELG--KNGFVGNRS--RSGRSEWWT 344
           P EV+ +L++ NL R RS + LP+  SSRQGYRS  +G  + GF   R   R   S  ++
Sbjct: 280 PEEVQRQLVSLNLIR-RSHIVLPQAVSSRQGYRSGSVGSERGGFSQGRQTHRRALSMSFS 339

Query: 345 FFPATPLFRREGSRNDANVNVNGDGGGRPFVRLRDDGHV 367
           F   T   R     ND     +   G R F RL  +  V
Sbjct: 340 FSFQTASVRSIHDMNDQAQAKDKYFGERSFERLMPEEKV 345

BLAST of CmaCh05G005160 vs. ExPASy Swiss-Prot
Match: Q9C7I1 (RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.4e-48
Identity = 132/321 (41.12%), Postives = 171/321 (53.27%), Query Frame = 0

Query: 18  HSILLSHISLAAAQSGGPAVPSPPEMYSFKQTISKRMAVVLIVLVCFFIVLALLS--VYT 77
           H I L  + L  +    P   +PP    +      ++  V+I ++ F ++ ++L+  V  
Sbjct: 13  HVIFLLLLVLQVSGQHQPRTTAPP----YIAQRPNQVPAVIIAMLMFTLLFSMLACCVCY 72

Query: 78  RQCNDQRFGGHLLLPTAAEGINGRPRRAARGLDAAVIASFPTFVYSNVKGLKIGKGALEC 137
           +  N    G          G     RR +RGL   VI SFP+F+YS VKGLKIGKG +EC
Sbjct: 73  KYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVEC 132

Query: 138 AVCLSEFEDDNTLRLLPKCSHVFHSDCIDAWLVSHSTCPVCRASLVPKPGDISFAALLDS 197
           A+CL+EFED+ TLRL+P CSH FH+ CID WL S STCPVCRASL PKPG  S    L  
Sbjct: 133 AICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPG--SDQNSLYP 192

Query: 198 DSRIHGDDGNRVAGLENCQV--------GIRIPEGNPQNQGLNQNGPIRSRSTG---WRL 257
             R H    N+   LEN            +R+ +    +     N P RSRSTG   WR+
Sbjct: 193 FIRPH---DNQDMDLENVTARRSVLESPDVRLLDRLSWSNNTGANTPPRSRSTGLSNWRI 252

Query: 258 IG-LFPRSHSTGHSLVQIGADYERFTLRLPTEVRSELLNSNLNRARSCVALPRVQSSRQG 317
              LFPRSHSTGHSLV    + +RFTL+LP EVR +L +           LP+ +SSR+G
Sbjct: 253 TELLFPRSHSTGHSLVPRVENLDRFTLQLPEEVRRQLSHMK--------TLPQARSSREG 311

Query: 318 YRSELGKNGFVGNRSRSGRSE 325
           YRS     G VG+  R    E
Sbjct: 313 YRS-----GSVGSERRGKGKE 311

BLAST of CmaCh05G005160 vs. TAIR 10
Match: AT1G72200.1 (RING/U-box superfamily protein )

HSP 1 Score: 211.5 bits (537), Expect = 2.3e-54
Identity = 136/310 (43.87%), Postives = 184/310 (59.35%), Query Frame = 0

Query: 54  MAVVLIVLVCFFIVLALLSVYTRQCNDQRFGGHLLLPTAAEGINGRPRRAARGLDAAVIA 113
           MA+++IVLV  F  L   SVY R+C ++  G     P  A       R+ ARGLDA++I 
Sbjct: 63  MAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIE 122

Query: 114 SFPTFVYSNVKGLKIGKGALECAVCLSEFEDDNTLRLLPKCSHVFHSDCIDAWLVSHSTC 173
           +FPTF YS VK L+IGK ALEC+VCL+EFEDD TLRL+PKC HVFH  CIDAWL SH+TC
Sbjct: 123 TFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTC 182

Query: 174 PVCRASLVPKPGDISFAAL----LDSDSRIHGDDGNRVAGLENCQVGIRIPEGNPQNQGL 233
           P+CRA L+P PG+ S  ++    L +D      +G+R+  L +     R+ E        
Sbjct: 183 PLCRADLIPVPGE-SIVSIQIPGLVNDPPGSDPNGDRIRSLGSPDA--RLIESVALT--C 242

Query: 234 NQNGPIRSRSTGWRLIGLFPRSHSTGHSLVQIGADYERFTLRLPTEVRSELLNSNLNRAR 293
           NQ+ P RS STGW L G+F  S  TG    Q   + +RFTLRLP ++ ++L+N NL++  
Sbjct: 243 NQSMPRRSMSTGWNLAGMFTNSDRTG----QHSENLDRFTLRLPQDIHNKLVNPNLSKVH 302

Query: 294 SCVALPRVQSSRQGYRS-ELG--KNGFVGNR-SRSGRSEWWTFFPATPLFRREGSRNDAN 353
             VALP+V SS +GYR+  LG  +N F   R  + GR +    F  TP +R        +
Sbjct: 303 --VALPQVMSSTRGYRTGSLGSERNYFYYERFDQDGRLDRRP-FSITPPYRTSSIN---H 357

Query: 354 VNVNGDGGGR 356
           ++  G GG +
Sbjct: 363 MSPGGSGGDK 357

BLAST of CmaCh05G005160 vs. TAIR 10
Match: AT2G35000.1 (RING/U-box superfamily protein )

HSP 1 Score: 200.7 bits (509), Expect = 4.0e-51
Identity = 142/373 (38.07%), Postives = 199/373 (53.35%), Query Frame = 0

Query: 15  FLIHSILLSHISLAAAQSGGPAVPSPPEMYSFKQTISKRMAVVLIVLVCFFIVLALLSVY 74
           FL+  +LL  +     Q+      +PP     K      + + ++ LV FF+V    S++
Sbjct: 18  FLLLLLLLQSVPYGFGQT----QTTPPGTTKTKPNDPVVVVITVLFLVIFFMVFG--SIF 77

Query: 75  TRQCNDQRFGGHLLLPTAAEGING--RPRR-AARGLDAAVIASFPTFVYSNVKGLKIGKG 134
            R+ N Q     +   T A+  +   R RR  ARGLDA  I +FPTF+YS VK ++IGKG
Sbjct: 78  CRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKG 137

Query: 135 ALECAVCLSEFEDDNTLRLLPKCSHVFHSDCIDAWLVSHSTCPVCRASLV-PKPGDISFA 194
            +ECAVCL EFEDD TLRL+P C HVFH+DC+D WL  HSTCP+CRA LV  + GD    
Sbjct: 138 GVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQQGDDD-- 197

Query: 195 ALLDSDSRIHGDDGNRVAGLENCQVGIRIPEGNPQNQGL----NQNGPIRSRSTG---WR 254
              DS     G D   ++   + + G+ +   +          N N   RS+STG   W+
Sbjct: 198 ---DSTESYSGTDPGTISSSTDPERGMVLESSDAHLLDAVTWSNSNITPRSKSTGLSSWQ 257

Query: 255 LIG-LFPRSHSTGHSLVQIGADYERFTLRLPTEVRSELLNSNLNRARSCVALPRVQSSRQ 314
           + G LFPRSHSTGHSL+Q   + +RFTLRLP +VR +L+ ++       + LP+ +SSR 
Sbjct: 258 ITGILFPRSHSTGHSLIQPAGNLDRFTLRLPDDVRRQLMKTSRTMGHVAL-LPQARSSRS 317

Query: 315 GYRS-ELG--KNGFVGNRSRSGRSEWWTFFPATPLFRREGSRN----DA--NVNVNGDGG 367
           GYRS  +G  ++ F   R  +  +        +  FR    R+    DA  N+  + + G
Sbjct: 318 GYRSGSVGSERSAFPYGRKSNNNNRRLHSLSFSFSFRSGSVRSTFSGDAPKNLPTSIEAG 377

BLAST of CmaCh05G005160 vs. TAIR 10
Match: AT3G05200.1 (RING/U-box superfamily protein )

HSP 1 Score: 196.8 bits (499), Expect = 5.8e-50
Identity = 138/349 (39.54%), Postives = 186/349 (53.30%), Query Frame = 0

Query: 16  LIHSILLSHISLAAAQSGGPAVPSPPEMYSFKQTISKRMAVVLIVLVCFFIVLALLSVYT 75
           ++  ++LS   LAA+QS  P   + P  Y     +S  MAV++++L+     +   S+Y 
Sbjct: 15  IVFLLILSSADLAASQS-QPGPTNQPYNYG---RLSPAMAVIVVILIAALFFMGFFSIYF 74

Query: 76  RQCNDQRFGGHLLLPTAAEGINGRPRRAARGLDAAVIASFPTFVYSNVKGLKIGKGALEC 135
           R C+     G  + P            AARGLD +V+ +FPTF+YS+VK  K+GKG LEC
Sbjct: 75  RHCSGVPDAG--VSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELEC 134

Query: 136 AVCLSEFEDDNTLRLLPKCSHVFHSDCIDAWLVSHSTCPVCRASLVPKPGDISFAALLDS 195
           A+CL+EFEDD TLRLLPKC HVFH  CIDAWL +H TCPVCRA+L  +        + + 
Sbjct: 135 AICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQ--------VAEG 194

Query: 196 DSRIHGDDGNRVAGLENCQVGIRIPEGNPQNQGLNQNGPIRSRSTGWRLIGL-------- 255
           +S    + G     LE  QV +  PE  P          + S     RL G+        
Sbjct: 195 ES---VEPGGTEPDLELQQVVVN-PE--PVVTAPVPEQLVTSEVDSRRLPGVPVDLKRVK 254

Query: 256 FPRSHSTGHSLVQIGADYERFTLRLPTEVRSELLNS-NLNRARSCVALPRVQSSRQGYRS 315
           F RSH+TGHS+VQ G   ERFTLRLP +VR  ++    LNR  S + LPR  SSR+G   
Sbjct: 255 FSRSHTTGHSVVQPGECTERFTLRLPEDVRKRIMKDWKLNRTNSLLVLPRGGSSRRGKPI 314

Query: 316 ELGKNGFVGNRSRSGRSEWWTFFPATPLFRREGSRNDANVNVNGDGGGR 356
           +         RSR+ RS+ W  F  TP F    SR+D ++ +   G  R
Sbjct: 315 D---------RSRA-RSDRW-LFRKTPSFLWR-SRDDGSIRLGATGSVR 331

BLAST of CmaCh05G005160 vs. TAIR 10
Match: AT4G09120.1 (RING/U-box superfamily protein )

HSP 1 Score: 196.1 bits (497), Expect = 9.8e-50
Identity = 142/339 (41.89%), Postives = 184/339 (54.28%), Query Frame = 0

Query: 45  SFKQTISKRMAVVLIVLVCFFIVLALLS-----VYTRQCNDQRFGGHLLLPTAAEGINGR 104
           S +QT     +++ IV++  FI L ++S     ++ R+               A G +  
Sbjct: 40  SIRQTNLSADSIIAIVVLAIFISLGMVSCCLHCIFYRE------------EIGAAGQDVL 99

Query: 105 PRRAARGLDAAVIASFPTFVYSNVKGLKIGKGALECAVCLSEFEDDNTLRLLPKCSHVFH 164
             RA RGL+  VI SFPTF+YS VKGLKIGKG +ECA+CLSEFED  TLR +P CSH FH
Sbjct: 100 HSRARRGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFH 159

Query: 165 SDCIDAWLVSHSTCPVCRASLVPKPGDISFAALLDSDSRIHGDDGNRVAGLENCQVGIRI 224
           ++CID WL S STCPVCRA+L  KPG+ S+  L                   N  V    
Sbjct: 160 ANCIDVWLSSWSTCPVCRANLSLKPGE-SYPYL-------------------NMDVETGG 219

Query: 225 PEGNPQNQGLNQNG-PIRSRSTG----WRLIGLF-PRSHSTGHSLV-QIGADYERFTLRL 284
            +  P  + L  N    RSRSTG    WR+  +F PRSHSTGHSLV Q+G + +RFTL+L
Sbjct: 220 VQKLPNERSLTGNSVTTRSRSTGLLSSWRMAEIFVPRSHSTGHSLVQQLGENLDRFTLQL 279

Query: 285 PTEVRSELLNSNLNRARSCVALPRVQSSRQGYRS-ELG--KNGFVGNRS--RSGRSEWWT 344
           P EV+ +L++ NL R RS + LP+  SSRQGYRS  +G  + GF   R   R   S  ++
Sbjct: 280 PEEVQRQLVSLNLIR-RSHIVLPQAVSSRQGYRSGSVGSERGGFSQGRQTHRRALSMSFS 339

Query: 345 FFPATPLFRREGSRNDANVNVNGDGGGRPFVRLRDDGHV 367
           F   T   R     ND     +   G R F RL  +  V
Sbjct: 340 FSFQTASVRSIHDMNDQAQAKDKYFGERSFERLMPEEKV 345

BLAST of CmaCh05G005160 vs. TAIR 10
Match: AT1G35330.1 (RING/U-box superfamily protein )

HSP 1 Score: 195.3 bits (495), Expect = 1.7e-49
Identity = 132/321 (41.12%), Postives = 171/321 (53.27%), Query Frame = 0

Query: 18  HSILLSHISLAAAQSGGPAVPSPPEMYSFKQTISKRMAVVLIVLVCFFIVLALLS--VYT 77
           H I L  + L  +    P   +PP    +      ++  V+I ++ F ++ ++L+  V  
Sbjct: 13  HVIFLLLLVLQVSGQHQPRTTAPP----YIAQRPNQVPAVIIAMLMFTLLFSMLACCVCY 72

Query: 78  RQCNDQRFGGHLLLPTAAEGINGRPRRAARGLDAAVIASFPTFVYSNVKGLKIGKGALEC 137
           +  N    G          G     RR +RGL   VI SFP+F+YS VKGLKIGKG +EC
Sbjct: 73  KYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVEC 132

Query: 138 AVCLSEFEDDNTLRLLPKCSHVFHSDCIDAWLVSHSTCPVCRASLVPKPGDISFAALLDS 197
           A+CL+EFED+ TLRL+P CSH FH+ CID WL S STCPVCRASL PKPG  S    L  
Sbjct: 133 AICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPG--SDQNSLYP 192

Query: 198 DSRIHGDDGNRVAGLENCQV--------GIRIPEGNPQNQGLNQNGPIRSRSTG---WRL 257
             R H    N+   LEN            +R+ +    +     N P RSRSTG   WR+
Sbjct: 193 FIRPH---DNQDMDLENVTARRSVLESPDVRLLDRLSWSNNTGANTPPRSRSTGLSNWRI 252

Query: 258 IG-LFPRSHSTGHSLVQIGADYERFTLRLPTEVRSELLNSNLNRARSCVALPRVQSSRQG 317
              LFPRSHSTGHSLV    + +RFTL+LP EVR +L +           LP+ +SSR+G
Sbjct: 253 TELLFPRSHSTGHSLVPRVENLDRFTLQLPEEVRRQLSHMK--------TLPQARSSREG 311

Query: 318 YRSELGKNGFVGNRSRSGRSE 325
           YRS     G VG+  R    E
Sbjct: 313 YRS-----GSVGSERRGKGKE 311

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q84W403.2e-5343.87RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2[more]
O647635.6e-5038.07E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV... [more]
Q8RXX98.1e-4939.54E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV... [more]
Q9M0R51.4e-4841.89Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana OX=3702 GN=ATL36 P... [more]
Q9C7I12.4e-4841.12RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT1G72200.12.3e-5443.87RING/U-box superfamily protein [more]
AT2G35000.14.0e-5138.07RING/U-box superfamily protein [more]
AT3G05200.15.8e-5039.54RING/U-box superfamily protein [more]
AT4G09120.19.8e-5041.89RING/U-box superfamily protein [more]
AT1G35330.11.7e-4941.12RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 135..176
e-value: 1.3E-7
score: 41.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 134..177
e-value: 4.4E-14
score: 52.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 135..177
score: 12.887609
IPR011417AP180 N-terminal homology (ANTH) domainPFAMPF07651ANTHcoord: 412..527
e-value: 7.3E-11
score: 41.6
IPR008942ENTH/VHSGENE3D1.25.40.90coord: 383..536
e-value: 1.3E-22
score: 82.0
IPR008942ENTH/VHSSUPERFAMILY48464ENTH/VHS domaincoord: 410..529
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 97..182
e-value: 4.4E-21
score: 76.3
NoneNo IPR availablePANTHERPTHR22951CLATHRIN ASSEMBLY PROTEINcoord: 380..687
NoneNo IPR availablePANTHERPTHR22951:SF24CLATHRIN ASSEMBLY PROTEINcoord: 380..687
NoneNo IPR availableCDDcd16987ANTH_N_AP180_plantcoord: 412..531
e-value: 5.51867E-34
score: 123.888
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 134..177
e-value: 2.47211E-20
score: 82.3497
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 129..185
IPR013809ENTH domainPROSITEPS50942ENTHcoord: 404..543
score: 9.828473

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G005160.1CmaCh05G005160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006897 endocytosis
cellular_component GO:0005905 clathrin-coated pit
cellular_component GO:0030136 clathrin-coated vesicle
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005543 phospholipid binding