CmaCh05G005140 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G005140
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribonuclease H-like domain-containing protein
Location	Cma_Chr05: 2450747 .. 2452555 (-)
RNA-Seq Expression	CmaCh05G005140
Synteny	CmaCh05G005140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCATTCCTTCACAAATGTCGATCGTTTCGGTTTCTTACTCTTCAGCCAGCCTTCGTTCCACCGTCCAGTCCCGCCGCCATGGATCAAACCTTAACCTCAGCCATCTCCTTCACAAAGCCAACAGTTTGCCGTTCCCACGCACAATTCCCAAAAACAGAGTCACCCATATCACGACTTACAGAGACATGGCGGTTTACGGCGGCGGCGGCGGCGGCGGCGGCCTTGGATCTCCCCTTCCTCAGCCGCCTCCTCCTCCCCCTTTGACTCCTTGGTATTTAAATTATGTTTGAATTAATTTTTTTCTCGTATTTTCCAGGTGGAAAATTACAGAGTGTTGTTTTTGGCAGGCCATTGTGGGTAGCTGGGGCGGTGCTATCGGCAATTCTATCCATTTGGAAGACGACCAAATATTGGGGGCCTTTTCTTATGTTGAAGCGTGAGGAATATAATGATGAATTTTAACACTGTTTCTTTTTTTTTTGCTATGCATAATTTGTGTTGAATTTGTGTAGAGAGAGTGGAGAAGGTGGTGCATGTGGCGGAGGACGTGGTAGATATGGTGGAGACGGCGGCGAAGGAAGTGGATAAGGTGTCGGAAGAGATTGTCGATCATCTCCCCAAAGACAGCATACTCCAAAAAACGGCAGTTTTAGTGGAAAATACAGCTGAAACCGTTGCTAAGGACGCCAATTTGGCGGCGGAAATTATCGGCAAGGTTAGGCCTTTTCTCCGAACTTACCACTCCACATCATCTCTTCACTTTTTCTTAGCTCACAACCTTATTTTATTGATATTTTTATAAATTTTTTCTATTTTTATAAAATCTTTTTGAAACATAGACTAAATTTAAAATATATATATATAGATATAGATATTAAAACCATAAGGATTGTTTCTCGTGACATAAGTGCTCTTGGGGTCATTTCGTCAAATATTTGAGAAGGTCGTATTTGATGGTCGGCGTGGTGATAGGATTTGCTAATACGATCGCCTCCCCAACTGTTGCAAACACTAAGCGAGAATGGTAAGTGGTGCACAAACAATGTCAAGCTGGGACAAACAAAGTCATCTGGCCCCACTGAATTAGGAATGCGAAGGCCTTTCCCCTTTAAAAGGAGACTCGATTTGATAAATATTCTTAAACTTTTAACAGTGTTTTAAAAACATCTTTGATTTTTTAAAAAATCATTAATAATATCTTTAAACTTGTAAGGGCATTTTTAAACGTTTTGAAATTTGGGTATTGAATAAACAAAATATTAAAATATGTATTTGTTTAAGTATATTTTAATTTTTTTTAAAAAAAATAAAAAATTAATGAAAAATTTTAAAATATCGAGAAAAATAAAGCATGAGATTCAAAAATATTTTAATTAATTTAATCTTGAACTAGAAAATTAAAACTTAAAATTAATTTTCAAAATTCAAATTAAACTTTTATAATTTCATTTTTCTAACTTTTAAAATGTCAAAGACGTTTTCGTCACATAAATAAATAATTACAAATGACTGTTTATGGTGGGATTTAGTTATTATATATATTGTAATTATTAATTTTCCTTATAATTCAATCATTTATTATTATTATTTATAATTTGATTTATTTTAAATATAAATTACCTCAGGTGGAGAAATTTGACGACGGGTTGAGCTCATTAATTAAGAAGAAAGGAGGAAGTAAAGAAGGCGACGCAAAACCCAAACCCTAGACCAACCTCTTCAATCAAATATTCAAATATTATATTTATAATAATATACTAATTATTATTTTAAATATGAATCCAATTATGAAATAATCCAAATAAAT

mRNA sequence

TCCCATTCCTTCACAAATGTCGATCGTTTCGGTTTCTTACTCTTCAGCCAGCCTTCGTTCCACCGTCCAGTCCCGCCGCCATGGATCAAACCTTAACCTCAGCCATCTCCTTCACAAAGCCAACAGTTTGCCGTTCCCACGCACAATTCCCAAAAACAGAGTCACCCATATCACGACTTACAGAGACATGGCGGTTTACGGCGGCGGCGGCGGCGGCGGCGGCCTTGGATCTCCCCTTCCTCAGCCGCCTCCTCCTCCCCCTTTGACTCCTTGGCCATTGTGGGTAGCTGGGGCGGTGCTATCGGCAATTCTATCCATTTGGAAGACGACCAAATATTGGGGGCCTTTTCTTATGTTGAAGCAGAGAGTGGAGAAGGTGGTGCATGTGGCGGAGGACGTGGTAGATATGGTGGAGACGGCGGCGAAGGAAGTGGATAAGGTGTCGGAAGAGATTGTCGATCATCTCCCCAAAGACAGCATACTCCAAAAAACGGCAGTTTTAGTGGAAAATACAGCTGAAACCGTTGCTAAGGACGCCAATTTGGCGGCGGAAATTATCGGCAAGGTGGAGAAATTTGACGACGGGTTGAGCTCATTAATTAAGAAGAAAGGAGGAAGTAAAGAAGGCGACGCAAAACCCAAACCCTAGACCAACCTCTTCAATCAAATATTCAAATATTATATTTATAATAATATACTAATTATTATTTTAAATATGAATCCAATTATGAAATAATCCAAATAAAT

Coding sequence (CDS)

ATGTCGATCGTTTCGGTTTCTTACTCTTCAGCCAGCCTTCGTTCCACCGTCCAGTCCCGCCGCCATGGATCAAACCTTAACCTCAGCCATCTCCTTCACAAAGCCAACAGTTTGCCGTTCCCACGCACAATTCCCAAAAACAGAGTCACCCATATCACGACTTACAGAGACATGGCGGTTTACGGCGGCGGCGGCGGCGGCGGCGGCCTTGGATCTCCCCTTCCTCAGCCGCCTCCTCCTCCCCCTTTGACTCCTTGGCCATTGTGGGTAGCTGGGGCGGTGCTATCGGCAATTCTATCCATTTGGAAGACGACCAAATATTGGGGGCCTTTTCTTATGTTGAAGCAGAGAGTGGAGAAGGTGGTGCATGTGGCGGAGGACGTGGTAGATATGGTGGAGACGGCGGCGAAGGAAGTGGATAAGGTGTCGGAAGAGATTGTCGATCATCTCCCCAAAGACAGCATACTCCAAAAAACGGCAGTTTTAGTGGAAAATACAGCTGAAACCGTTGCTAAGGACGCCAATTTGGCGGCGGAAATTATCGGCAAGGTGGAGAAATTTGACGACGGGTTGAGCTCATTAATTAAGAAGAAAGGAGGAAGTAAAGAAGGCGACGCAAAACCCAAACCCTAG

Protein sequence

MSIVSVSYSSASLRSTVQSRRHGSNLNLSHLLHKANSLPFPRTIPKNRVTHITTYRDMAVYGGGGGGGGLGSPLPQPPPPPPLTPWPLWVAGAVLSAILSIWKTTKYWGPFLMLKQRVEKVVHVAEDVVDMVETAAKEVDKVSEEIVDHLPKDSILQKTAVLVENTAETVAKDANLAAEIIGKVEKFDDGLSSLIKKKGGSKEGDAKPKP

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh05G005140 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G005140 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33735:SF14	PHAGE CAPSID SCAFFOLDING PROTEIN (GPO) SERINE PEPTIDASE	coord: 10..202
None	No IPR available	PANTHER	PTHR33735	EXPRESSED PROTEIN	coord: 10..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G005140.1	CmaCh05G005140.1	mRNA