CmaCh05G005020 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G005020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	methyl-CpG-binding domain-containing protein 8-like
Location	Cma_Chr05: 2385901 .. 2386560 (-)
RNA-Seq Expression	CmaCh05G005020
Synteny	CmaCh05G005020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACAACTATGGTTGCTTCCCCTTCCAACGACAATCTTCGCATGAATACTCTGCCGATCATAGATCTCCGTCGCCTCTCCCAATCCGACCTCTATTGTCTTTCTCGTTTCTTCTCCTCATCTTCTTCTTCAACCTCCCAATCCAACAACGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAATGAGTCCGCCGGTAGCCGAAAACAAACCTATTCTCGCCTCCGTCTAGCCCCTCGCAAGCCCCAATTTTCTTCCTCCTTGTCCTCCTCCACATTTCGCTCCCAATCCTCCGACCGCCTAGATGTAGGCAGCGCTCAGATTGTTACTCGCTTGAAGCAACTCTTCGTTGGAGATTCTCATTGTGCCGTCAACGACAGCTACGGCGACGGAGATGAGGACCTGGTCCTTGTTAACCACATTTACGACGAATCAGTACCTGATTCTTCCTACGCCATTTTCCAGAGTATTCCTGTTGATATTATCGATAGCAGTTATGGTCCGATTAAGCGGCGGAGAGGGCGACCGCGGAAGGACAGCAATCGGTTTGCTCAGAGTAATGGAAATGCGGCTCCGAACTCCAAAAGCGGCTGCGAAAAACGGGCGGCGGAGGAGGAGGAGGAGATCGTAATGGTAATGCTGTGA

mRNA sequence

ATGGCTTCCACAACTATGGTTGCTTCCCCTTCCAACGACAATCTTCGCATGAATACTCTGCCGATCATAGATCTCCGTCGCCTCTCCCAATCCGACCTCTATTGTCTTTCTCGTTTCTTCTCCTCATCTTCTTCTTCAACCTCCCAATCCAACAACGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAATGAGTCCGCCGGTAGCCGAAAACAAACCTATTCTCGCCTCCGTCTAGCCCCTCGCAAGCCCCAATTTTCTTCCTCCTTGTCCTCCTCCACATTTCGCTCCCAATCCTCCGACCGCCTAGATGTAGGCAGCGCTCAGATTGTTACTCGCTTGAAGCAACTCTTCGTTGGAGATTCTCATTGTGCCGTCAACGACAGCTACGGCGACGGAGATGAGGACCTGGTCCTTGTTAACCACATTTACGACGAATCAGTACCTGATTCTTCCTACGCCATTTTCCAGAGTATTCCTGTTGATATTATCGATAGCAGTTATGGTCCGATTAAGCGGCGGAGAGGGCGACCGCGGAAGGACAGCAATCGGTTTGCTCAGAGTAATGGAAATGCGGCTCCGAACTCCAAAAGCGGCTGCGAAAAACGGGCGGCGGAGGAGGAGGAGGAGATCGTAATGGTAATGCTGTGA

Coding sequence (CDS)

ATGGCTTCCACAACTATGGTTGCTTCCCCTTCCAACGACAATCTTCGCATGAATACTCTGCCGATCATAGATCTCCGTCGCCTCTCCCAATCCGACCTCTATTGTCTTTCTCGTTTCTTCTCCTCATCTTCTTCTTCAACCTCCCAATCCAACAACGACGACGACGTTCTAATCCCCAAAATTGATCGATCTGTCTTCAATGAGTCCGCCGGTAGCCGAAAACAAACCTATTCTCGCCTCCGTCTAGCCCCTCGCAAGCCCCAATTTTCTTCCTCCTTGTCCTCCTCCACATTTCGCTCCCAATCCTCCGACCGCCTAGATGTAGGCAGCGCTCAGATTGTTACTCGCTTGAAGCAACTCTTCGTTGGAGATTCTCATTGTGCCGTCAACGACAGCTACGGCGACGGAGATGAGGACCTGGTCCTTGTTAACCACATTTACGACGAATCAGTACCTGATTCTTCCTACGCCATTTTCCAGAGTATTCCTGTTGATATTATCGATAGCAGTTATGGTCCGATTAAGCGGCGGAGAGGGCGACCGCGGAAGGACAGCAATCGGTTTGCTCAGAGTAATGGAAATGCGGCTCCGAACTCCAAAAGCGGCTGCGAAAAACGGGCGGCGGAGGAGGAGGAGGAGATCGTAATGGTAATGCTGTGA

Protein sequence

MASTTMVASPSNDNLRMNTLPIIDLRRLSQSDLYCLSRFFSSSSSSTSQSNNDDDVLIPKIDRSVFNESAGSRKQTYSRLRLAPRKPQFSSSLSSSTFRSQSSDRLDVGSAQIVTRLKQLFVGDSHCAVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIIDSSYGPIKRRRGRPRKDSNRFAQSNGNAAPNSKSGCEKRAAEEEEEIVMVML

Homology

[Close]

BLAST of CmaCh05G005020 vs. ExPASy Swiss-Prot
Match: Q9LME6 (Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 GN=MBD8 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.8e-16
Identity = 76/185 (41.08%), Postives = 104/185 (56.22%), Query Frame = 0


Query: 11  SNDNLRMNTLPIIDLRRLSQSDLYCLSRFFS---SSSSSTSQSNNDDDVLIPKIDRSVFN 70
           + + L   +LP+ID R LSQS+L  LS+  S   SSS+S + S   DD L PKIDRSVFN
Sbjct: 17  AGNRLSAESLPLIDTRLLSQSELRALSQCSSLSPSSSASLAASAGGDDDLTPKIDRSVFN 76

Query: 71  ESAGSRKQTYSRLRLAPRKPQFSSSLSSSTFRSQSSDRLDVGSAQIVTRLKQLFVGDSHC 130
           ESAGSRKQT+ RLRLA R PQ      S   +   S R +    Q+ + L+ LF  DS+ 
Sbjct: 77  ESAGSRKQTFLRLRLA-RHPQPPEEPPSPQRQRDDSSREE--QTQVASLLRSLFNVDSNQ 136

Query: 131 AVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIID------SSYGPIKRRRGRP 187
           +  +   +G+E+L       +  +  +SY ++Q   +D I       +S   IKR+RGRP
Sbjct: 137 S-KEEEDEGEEEL----EDNEGQIHYNSY-VYQRPNLDSIQNVLIQGTSGNKIKRKRGRP 192

[Close]

BLAST of CmaCh05G005020 vs. TAIR 10
Match: AT1G22310.2 (methyl-CPG-binding domain 8 )

HSP 1 Score: 86.3 bits (212), Expect = 3.4e-17
Identity = 76/185 (41.08%), Postives = 104/185 (56.22%), Query Frame = 0


Query: 11  SNDNLRMNTLPIIDLRRLSQSDLYCLSRFFS---SSSSSTSQSNNDDDVLIPKIDRSVFN 70
           + + L   +LP+ID R LSQS+L  LS+  S   SSS+S + S   DD L PKIDRSVFN
Sbjct: 17  AGNRLSAESLPLIDTRLLSQSELRALSQCSSLSPSSSASLAASAGGDDDLTPKIDRSVFN 76

Query: 71  ESAGSRKQTYSRLRLAPRKPQFSSSLSSSTFRSQSSDRLDVGSAQIVTRLKQLFVGDSHC 130
           ESAGSRKQT+ RLRLA R PQ      S   +   S R +    Q+ + L+ LF  DS+ 
Sbjct: 77  ESAGSRKQTFLRLRLA-RHPQPPEEPPSPQRQRDDSSREE--QTQVASLLRSLFNVDSNQ 136

Query: 131 AVNDSYGDGDEDLVLVNHIYDESVPDSSYAIFQSIPVDIID------SSYGPIKRRRGRP 187
           +  +   +G+E+L       +  +  +SY ++Q   +D I       +S   IKR+RGRP
Sbjct: 137 S-KEEEDEGEEEL----EDNEGQIHYNSY-VYQRPNLDSIQNVLIQGTSGNKIKRKRGRP 192

The following BLAST results are available for this feature:

BLAST of CmaCh05G005020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LME6	4.8e-16	41.08	Methyl-CpG-binding domain-containing protein 8 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CmaCh05G005020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22310.2	3.4e-17	41.08	methyl-CPG-binding domain 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..211
None	No IPR available	PANTHER	PTHR37701:SF1	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8	coord: 5..213
IPR037472	Methyl-CpG-binding domain-containing protein 8	PANTHER	PTHR37701	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8	coord: 5..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G005020.1	CmaCh05G005020.1	mRNA