CmaCh05G004970 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G004970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Serine/arginine-rich splicing factor SC35-like
Location	Cma_Chr05: 2354694 .. 2359340 (-)
RNA-Seq Expression	CmaCh05G004970
Synteny	CmaCh05G004970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTTCATCAGAGACCTAGTTGAGTTTGAGCCCTGAATCCGCCGCTGCTGCTCGCCACTCTCTCCATAGCTGAATCCATTAGTTGCAGAGAGAAATGTCGCACTTCGGAAGATCCGGTCCTCCCGACATCAGAGATACCTACTCCCTTCTCGTCCTCAACATCACTTTCCGTATTTTCGACCCCTAATTCTTCTCTTATCCACTTTCTTTACCTTCAACCTCATCTCTTCCTCTCTGTTTTTTCTGTAATTTCTTGTCCCCTTTTTTGTTTTTCAGGAACCACCGCCGATGATCTTTACCCCCTTTTCGATAAGTATGGAAAGGTCGTCGACGTCTTCATCCCCAGAGACCGCAGGTATCTTTCTACCTCTCTCTGTCTCGCGCGCGCGCGCGCGTTTTATCTTTTTTTTTTTTTTTTCTCATTTTTTGATGAATTAGAGTGTGTAATTGGTTGATGGTGATTGCTGTTAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATATAAGTATGCAGATGAAGCACAGAAGGCAATTGACAAGCTTGACGGTCAGCTTCAGTTCGACGAAAATTCACATTAGCTTGAGCTTTTTCAATTTGAATTTGCTGCTGTTTTTATGCGAGATCAATTTGGGTTTCTCCTTTGCAATCTAGGACGAATGTTAGATGGCAGAGAAATTATGGTTCAATTCGCTAAATACGGTCCCAATGCCGAGAAAATGTGAGTTTACGGAACGCTTTTGTATGTAATTTGTCATACTCCACGTCCATGGCTCGAAGTATGCTTTGATTGATTCCTGAGTTTTGGTTGTTAATCAGTCGCAAGGGGAAGGTGATGGAGTCATCATCCAAGGCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGTGAGAGTCCTTGTCTAAATGCATCTGAACTCGTATCAGAGCTCTGGTGAAGAATTTTATATTTTCTCGAGGTAATTACCCTCATTTATTTATGAATCAAAACAAAAATTCAATCATTTAGAGTGAGAGGTAATGCAGTCTTCTATGGTTATGGATGCAATTTTCTTGACTTACATCCGTTCTGTGAGATCCCACATTGGTTAGGGAAGAGAACTAAACACTCTTTATAAGGGTGTGGAAACCTCTTCCTAACTCATTCTAAAAACCTTAAGGAGAAGTCCGAAAGGAAAAACCCAAAAAGGACAATATCTGCTTGCAGTGGGGTTGAACTGTTACACGTTCTCTGTTTTAGTAGAATTGGTGTATATGGTTAGAGGTAGAACTAGCTATGCGTGTTAATTTAGTTAATGGTAAACTTTAACATAAGGACATGATTTCTTGATTAAGACAGGCATTTTGCAAAATAGGCAAACTATGAGGATATGATTTGTAATTACTCCTTTATTTAACGTCTGATGCATGGAGTGCTGCAATCTCAGTGTTTTATAGTGTATGTTGCATTATGCAATTAGGCAATTCTAGAAAGTCTATCGTGTATGTTCACATCTGGCCTCACCTCTTTATTTCACCTACCTAAGTTTAGTGGTAATACATCGTCGGTCATTAGTATCTTGAATCCATGTCATAGATTCTGTGGATTGCAGAGAAGATATAAACAGAAAGAGCTGAAAGTAGCTGTTTTTGAATGTTTTAGACTGGTGGATTGCAGTCTTTCCTGAACTAGTTTGATATGTGAATGGGCGCGAGATGGTGGATATCAAATGGGCATTCTAAGCTTGAAGAAATATATTGAAAATCACGTAGTTATTTGCTTTTCTTATTTTTTTTCATTATTTTTTGAGGTGTCACCAATCATTCTATGAAGCTATCTTAGATTTGTTATGAACTTGTATTTGATTAACTACTGGTGTTGACAAAATCTTATGGGATAAGGAACGGATGGTTAGCAAGGCTTCACTTAAATGGAAGTTCTGACCCTTTTAGGCAATTGATTGTAATCTCACTGTTGCTATTCTACCTTTCTCATATGGTTCCAAAAACATTTCAGGCACCGCGATGACTATAGGGATAGAGATTATAGGAGAAGAAGTCGCAGTAGAAGCCGTGAGAGACATGATCGTGATAGACCCCACAGAAGTGAGAGAGAACGCTATCGTAGCCGAAGTCGTAGTGCTAGTCCTGATCGTATTAAAGATCGTCGGCGGGGAAGAGATGATGTTGAACGGCGTAGTGCTAGCCACTCTGATAGAAGGTACGCATACATTCTTAATTTTATTACTCTTTTGTGGGATATTGTCATAAGGCCTTGGTCATGGCATTGGTACTAGCTAGGAAGCACAAACATTTCGTTTTAGGAAAAATGTCCGTGTCAGACACGGATACATTTGGACACGCTCCGGACACATGTCCAGAATACTAAAACATGTATGGACATGGATGGATGCGCCTTTGAAAAATATTGAACTTAAGATTAGGAGAAAAAGAGAGAGATCTTCTTATAGGTTGAATCTTTATTATATTGATCAATCCTGAAGTATTTGAATGACAACTTCTTCCTCTGGTCATAGCCAACCAAAATTTTCTATATCTTTTAAGTTCTCAAACACCGTTAATTGGCTTAACTTGGTATATTTTTAGTGAAATGTATTCTGTTTTTATTTTATATTTACTTGTTTCATTTATAAAGCAATGTTAATTTATCAATATGTACACATATATTTTATTATAAAAAAAATGTGTCCCCCATGTGTATGCATCCTATTTTTTAGAAATTGACATGTTTTGATCGTCCTGCGTCCGTGCTTCTTAGTGTACTAGTTACCATCATTTTAAGGTTTTGCAGCACTTACTCTGGTACTTGCACAATAGTAATGTTTTTAGCTGGAAATTGTAGCCATTTAGTTGCATTTGCATGGGCAAGAGGATGGGTGGAGCCGTAGAGGTGGCCTTTTCCTGTTTTACTCACATTTTATTCTGCTATGTTCTAATGGTGAAGAGGGTATGTTTGCAAAACCATTAAAAAAAGTTTAGATTACTGTGTGCAAGCTGTTTCGGGCTGAACTTTCATTAAAATAACAATTTAGTCCCTGGACTTAAGCTTGTTACTATTTTTGTTTTCAAGCTTTTAAATTTGTAACAATTTAGTCCATATACTTTCAAATTTGTAACATTTTGTCCCAATCATGAGAAATCTTATAGATCTATCTACATGGGCAAGAAGTTTCATTAAATCTTAGTAGTACTTTTTTCATTAGAGACTAAATTGTTACAACTATTTTTTAACCTTGTTTGAAAATAAAAATGTTTTCTGAATTCTATTTTTAGTTTCTGAAGCCCATCCAAACACATTTTTACATCTCACATTGCCATGAACCGGACAAGGTCCTCATAATCATCCAATGTAATACTTTCCATATATATATATTGGTCTGTACTCTAATTAGAAATGGGTTCTATACTGAAGCATGTCGCCTGCCCGACATTCCCCTGATACTCGGAGAAGCATATCTCCACGTAGGACGCCACCATCTAGGGGTAGAAGCGATGAGGAGCATTCACCAAGGCGAGACAATGGCTCACCGGATGACAAACCAGTTGATTCTCGAAGTCCATCTCCTGCTAAATCCGATGCTGATGTGAGTAAACCTACCATGCTTATTGCTAATGTTCTTTTCAAGCATGATTTGTGGTCTGGTTAGTGATAGCCAAAATATGCCTGCAGGAATGAATGATCTATACATGCCATAGCGTTGGGTTTTAGAAATTATCTATGCATTTTATGATGGAAAACAAGCATGGCATCCCGGGGGGGATATTTTGCACAATTGTATCTGCCTTTATACTTCAAGGATTGGTTGGATGTCAAGATAGAGACATGTAGGATCCTGTTCCTAATTAGCTTATGAGTTCTTTTTTCTTTTTAGATTTCAATGTAGTTTCTGTACTATTTAACATGCAAAGTAAGAGTCTTCCCAGTGTTTGGTTTTTACCTCCTTAGATGTATAATGATTATGAATTGATTCTTCTGCATTGTATCTGTCTTTTTGGATCACTGTTCATCACATATTTTGTAGCTATTTATTTTTTCCTATCATAGGTTTGATTGATTGATTGATTATGGATGAAGTTTGTCGTTGAGATTCATGAGCCGATTGATATTTTGGATCCGTATTCATCACTTTCAAATTGGTTCAATTTACAATTCTTGGTCATTGAGATTCATGGGTTGATAGATATAATCTCGTACATTTGATTGATTGATTTAGATACGATAATGGATGAAGTTTGTTGTTGAGATTCATGAGCCGATCGATCACTTTCGAATTAAGATCAAATGATTTTCATTGAGATTCATGGATTGATTGATATTTTAAGGATGGTATTACCTTTTCTTTTTCTCATTCAACTAAATTGAATGACTGAAACTTTTCTATTTGGAATTGTATTAGGTCTAATTTCTGCCACTCGAGTAAAAATGAGTTAGCTCGAGAAGCTTGGTGACCATCGAAGCTTTTTAGTATAGTGCGATCATTAGTTGGTTGTCCATTGATCTCACCTAGTGTTGGACGACTTGACTCTCATATAGGTCGGATGTTTTCGAGAATAGTTTGTGCATCTATTTGAAGTATATTACATATGATGTCATTTCTAATGTGCGGTCTATAATTCCAATTACGATTTAGATATTTTTTA

mRNA sequence

TTGTTTCATCAGAGACCTAGTTGAGTTTGAGCCCTGAATCCGCCGCTGCTGCTCGCCACTCTCTCCATAGCTGAATCCATTAGTTGCAGAGAGAAATGTCGCACTTCGGAAGATCCGGTCCTCCCGACATCAGAGATACCTACTCCCTTCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGATAAGTATGGAAAGGTCGTCGACGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATATAAGTATGCAGATGAAGCACAGAAGGCAATTGACAAGCTTGACGGACGAATGTTAGATGGCAGAGAAATTATGGTTCAATTCGCTAAATACGGTCCCAATGCCGAGAAAATTCGCAAGGGGAAGGTGATGGAGTCATCATCCAAGGCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGCACCGCGATGACTATAGGGATAGAGATTATAGGAGAAGAAGTCGCAGTAGAAGCCGTGAGAGACATGATCGTGATAGACCCCACAGAAGTGAGAGAGAACGCTATCGTAGCCGAAGTCGTAGTGCTAGTCCTGATCGTATTAAAGATCGTCGGCGGGGAAGAGATGATGTTGAACGGCGTAGTGCTAGCCACTCTGATAGAAGCATGTCGCCTGCCCGACATTCCCCTGATACTCGGAGAAGCATATCTCCACGTAGGACGCCACCATCTAGGGGTAGAAGCGATGAGGAGCATTCACCAAGGCGAGACAATGGCTCACCGGATGACAAACCAGTTGATTCTCGAAGTCCATCTCCTGCTAAATCCGATGCTGATGTCTAATTTCTGCCACTCGAGTAAAAATGAGTTAGCTCGAGAAGCTTGGTGACCATCGAAGCTTTTTAGTATAGTGCGATCATTAGTTGGTTGTCCATTGATCTCACCTAGTGTTGGACGACTTGACTCTCATATAGGTCGGATGTTTTCGAGAATAGTTTGTGCATCTATTTGAAGTATATTACATATGATGTCATTTCTAATGTGCGGTCTATAATTCCAATTACGATTTAGATATTTTTTA

Coding sequence (CDS)

ATGTCGCACTTCGGAAGATCCGGTCCTCCCGACATCAGAGATACCTACTCCCTTCTCGTCCTCAACATCACTTTCCGAACCACCGCCGATGATCTTTACCCCCTTTTCGATAAGTATGGAAAGGTCGTCGACGTCTTCATCCCCAGAGACCGCAGGACTGGGGATTCCCGAGGATTTGCGTTTGTTCGATATAAGTATGCAGATGAAGCACAGAAGGCAATTGACAAGCTTGACGGACGAATGTTAGATGGCAGAGAAATTATGGTTCAATTCGCTAAATACGGTCCCAATGCCGAGAAAATTCGCAAGGGGAAGGTGATGGAGTCATCATCCAAGGCAAGGGGCAGGTCAAGGAGCCGCAGTCCACGTCCAAGGCACCGCGATGACTATAGGGATAGAGATTATAGGAGAAGAAGTCGCAGTAGAAGCCGTGAGAGACATGATCGTGATAGACCCCACAGAAGTGAGAGAGAACGCTATCGTAGCCGAAGTCGTAGTGCTAGTCCTGATCGTATTAAAGATCGTCGGCGGGGAAGAGATGATGTTGAACGGCGTAGTGCTAGCCACTCTGATAGAAGCATGTCGCCTGCCCGACATTCCCCTGATACTCGGAGAAGCATATCTCCACGTAGGACGCCACCATCTAGGGGTAGAAGCGATGAGGAGCATTCACCAAGGCGAGACAATGGCTCACCGGATGACAAACCAGTTGATTCTCGAAGTCCATCTCCTGCTAAATCCGATGCTGATGTCTAA

Protein sequence

MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSKARGRSRSRSPRPRHRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSRSRSASPDRIKDRRRGRDDVERRSASHSDRSMSPARHSPDTRRSISPRRTPPSRGRSDEEHSPRRDNGSPDDKPVDSRSPSPAKSDADV

Homology

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BLAST of CmaCh05G004970 vs. ExPASy Swiss-Prot
Match: Q9FMG4 (Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC35 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 7.5e-66
Identity = 173/274 (63.14%), Postives = 193/274 (70.44%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVME---SSSKARGRS 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KG+V+E    S ++R RS
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --------------------RSRSPRPRHRDDYRDRDYRRRSRSRS---RERH-DRDRPH 180
                               RSRSPR R RDDYR++DYR+RSRSRS   RERH ++DR H
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 181 RSERERYRSRSRSASPDRIKDRRRGRDDVERRSASHSDRSMSPARHSPDTRRSISPRRTP 240
           R      R+RSRSASPD  K R RGR D E RS S S  S SPAR SP   RS SP++T 
Sbjct: 181 RR-----RTRSRSASPDE-KRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKTS 240

Query: 241 PSRGRSDEEHSPRRDNGSPDDKPVDSRSPSPAKS 248
           P+R     E SP        DK  + RSPSP +S
Sbjct: 241 PAR-----EVSP--------DKRSNERSPSPRRS 251

[Close]

BLAST of CmaCh05G004970 vs. ExPASy Swiss-Prot
Match: P30352 (Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 99/223 (44.39%), Postives = 127/223 (56.95%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSKARGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G        +    RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGSSGYGRRSRS 122

Query: 124 PRPRHRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSRSRSASPDRIKDRRRGRDD 183
           PR R R   R R    RSRSRSR R+ R +     R R RSRSRS S  R   R + +  
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRSK----SRSRTRSRSRSTSKSRSARRSKSKSS 182

Query: 184 VERRSASHS---DRSMSP----ARHSPDTRRSISPRRTPPSRG 218
              RS S S    RS SP     R S    RS SP ++P   G
Sbjct: 183 SVSRSRSRSRSRSRSRSPPPTSKRESNSRSRSKSPPKSPEEEG 217

[Close]

BLAST of CmaCh05G004970 vs. ExPASy Swiss-Prot
Match: Q3MHR5 (Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3)

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-26
Identity = 99/223 (44.39%), Postives = 126/223 (56.50%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSKARGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRPRHRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSRSRSASPDRIKDRRRGRDD 183
           PR R R   R R    RSRSRSR R+ R +     R R RSRSRS S  R   R + +  
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRSK----SRSRTRSRSRSTSKSRSARRSKSKSS 182

Query: 184 VERRSASHS---DRSMSP----ARHSPDTRRSISPRRTPPSRG 218
              RS S S    RS SP     R S    RS SP ++P   G
Sbjct: 183 SVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG 217

[Close]

BLAST of CmaCh05G004970 vs. ExPASy Swiss-Prot
Match: Q01130 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=4)

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-26
Identity = 99/223 (44.39%), Postives = 126/223 (56.50%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSKARGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRPRHRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSRSRSASPDRIKDRRRGRDD 183
           PR R R   R R    RSRSRSR R+ R +     R R RSRSRS S  R   R + +  
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRSK----SRSRTRSRSRSTSKSRSARRSKSKSS 182

Query: 184 VERRSASHS---DRSMSP----ARHSPDTRRSISPRRTPPSRG 218
              RS S S    RS SP     R S    RS SP ++P   G
Sbjct: 183 SVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG 217

[Close]

BLAST of CmaCh05G004970 vs. ExPASy Swiss-Prot
Match: Q62093 (Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV=4)

HSP 1 Score: 120.6 bits (301), Expect = 2.6e-26
Identity = 99/223 (44.39%), Postives = 126/223 (56.50%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           +GR  PPD+    SL V N+T+RT+ D L  +F+KYG+V DV+IPRDR T +SRGFAFVR
Sbjct: 3   YGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 62

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYG--PNAEKIRKGKVMESSSKARGRSRSRS 123
           +    +A+ A+D +DG +LDGRE+ VQ A+YG  P++   R+G             RSRS
Sbjct: 63  FHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRS 122

Query: 124 PRPRHRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSRSRSASPDRIKDRRRGRDD 183
           PR R R   R R    RSRSRSR R+ R +     R R RSRSRS S  R   R + +  
Sbjct: 123 PRRRRRSRSRSRS---RSRSRSRSRYSRSK----SRSRTRSRSRSTSKSRSARRSKSKSS 182

Query: 184 VERRSASHS---DRSMSP----ARHSPDTRRSISPRRTPPSRG 218
              RS S S    RS SP     R S    RS SP ++P   G
Sbjct: 183 SVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG 217

[Close]

BLAST of CmaCh05G004970 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 251.9 bits (642), Expect = 5.4e-67
Identity = 173/274 (63.14%), Postives = 193/274 (70.44%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVME---SSSKARGRS 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KG+V+E    S ++R RS
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --------------------RSRSPRPRHRDDYRDRDYRRRSRSRS---RERH-DRDRPH 180
                               RSRSPR R RDDYR++DYR+RSRSRS   RERH ++DR H
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 181 RSERERYRSRSRSASPDRIKDRRRGRDDVERRSASHSDRSMSPARHSPDTRRSISPRRTP 240
           R      R+RSRSASPD  K R RGR D E RS S S  S SPAR SP   RS SP++T 
Sbjct: 181 RR-----RTRSRSASPDE-KRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKTS 240

Query: 241 PSRGRSDEEHSPRRDNGSPDDKPVDSRSPSPAKS 248
           P+R     E SP        DK  + RSPSP +S
Sbjct: 241 PAR-----EVSP--------DKRSNERSPSPRRS 251

[Close]

BLAST of CmaCh05G004970 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 251.9 bits (642), Expect = 5.4e-67
Identity = 173/274 (63.14%), Postives = 193/274 (70.44%), Query Frame = 0


Query: 1   MSHFGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFA 60
           MSHFGRSGPPDI DTYSLLVLNITFRTTADDLYPLF KYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1   MSHFGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFA 60

Query: 61  FVRYKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVME---SSSKARGRS 120
           FVRYKY DEA KA+++LDGR++DGREI VQFAKYGPNAEKI KG+V+E    S ++R RS
Sbjct: 61  FVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRS 120

Query: 121 --------------------RSRSPRPRHRDDYRDRDYRRRSRSRS---RERH-DRDRPH 180
                               RSRSPR R RDDYR++DYR+RSRSRS   RERH ++DR H
Sbjct: 121 PRRSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDH 180

Query: 181 RSERERYRSRSRSASPDRIKDRRRGRDDVERRSASHSDRSMSPARHSPDTRRSISPRRTP 240
           R      R+RSRSASPD  K R RGR D E RS S S  S SPAR SP   RS SP++T 
Sbjct: 181 RR-----RTRSRSASPDE-KRRVRGRYDNESRSHSRS-LSASPARRSP---RSSSPQKTS 240

Query: 241 PSRGRSDEEHSPRRDNGSPDDKPVDSRSPSPAKS 248
           P+R     E SP        DK  + RSPSP +S
Sbjct: 241 PAR-----EVSP--------DKRSNERSPSPRRS 251

[Close]

BLAST of CmaCh05G004970 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-13
Identity = 96/253 (37.94%), Postives = 123/253 (48.62%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 76
           SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSKARGR------------SRSRSPRP 136
           +DG +L GRE+ V FA+     E  +K   M +  +  GR            SRSRSP P
Sbjct: 97  MDGYLLLGRELTVVFAE-----ENRKKPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPP 156

Query: 137 RH-RDDYRDRDY-----RR---RSRSRSRERHDRDRPHRSERERYRSRSRSASPDRIKDR 196
           R  R   R  DY     RR   RS S   ER+D  R +        SR RS +P  ++ +
Sbjct: 157 RRGRSRSRSGDYYSPPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTP--VRGK 216

Query: 197 RRGRDDVERRSASHSD-RSMSPARHSPDTRRSISPRRT---PPSRGRSDEEHSPRRDNGS 245
            R      RRS S S  RS SP   SP   RS+SPRR+    P R R     SPRR   S
Sbjct: 217 SRSLSPSPRRSISRSPRRSRSP---SPKRNRSVSPRRSISRSPRRSR-----SPRRSRRS 274

[Close]

BLAST of CmaCh05G004970 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-11
Identity = 89/253 (35.18%), Postives = 129/253 (50.99%), Query Frame = 0


Query: 4   FGRSGPPDIRDTYSLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVR 63
           FG S   D+    SLLV N+      +DL   F+++G V D+++PRD  TGD RGF F++
Sbjct: 27  FGGSRDSDL--PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQ 86

Query: 64  YKYADEAQKAIDKLDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSKA-RGRSRSRSP 123
           +    +A +A  ++DG +L GRE+ V FA+   N +K  + +  +   ++ R + R RSP
Sbjct: 87  FMDPADAAEAKHQMDGYLLLGRELTVVFAE--ENRKKPTEMRTRDRGGRSNRFQDRRRSP 146

Query: 124 RPRHRDDYRDRDYRRRSRSRSRERHDRDRPHRSERERYRSRSRSASPDRIKDRRRGRDDV 183
            PR+    R    RR  RSRSR R     P +      R +SRS SP   +DRR  ++  
Sbjct: 147 -PRYS---RSPPPRRGRRSRSRSRGYNSPPAK------RHQSRSVSP---QDRRYEKERS 206

Query: 184 ERRSASHSD---RSMSPAR---HSPDTRRSISPRRTPPSRGRSDEEHSPRRDNGSPDDKP 243
             RS  H+    RS SP R   HS   RRS+SPR+        +  ++P +   S    P
Sbjct: 207 YSRSPPHNGSRVRSGSPGRVKSHSRSPRRSVSPRK--------NRSYTPEQAR-SQSPVP 253

Query: 244 VDSRSPSPAKSDA 250
             SRSP+P    A
Sbjct: 267 RQSRSPTPVPRGA 253

[Close]

BLAST of CmaCh05G004970 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 65.9 bits (159), Expect = 5.4e-11
Identity = 79/233 (33.91%), Postives = 103/233 (44.21%), Query Frame = 0


Query: 17  SLLVLNITFRTTADDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDK 76
           SLLV N+      +DL   F+++G V D+++PRD  TGD RGF FV++    +A  A   
Sbjct: 37  SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96

Query: 77  LDGRMLDGREIMVQFAKYGPNAEKIRKGKVMESSSKARGRSRSRSPRPRHRDDYRDRDYR 136
           +DG +L GRE+ V F      AE+ RK K  E  ++ RG  R           +RDR   
Sbjct: 97  MDGYLLLGRELTVVF------AEENRK-KPTEMRARERGGGR-----------FRDR--- 156

Query: 137 RRSRSRSRERHDRDRPHRSERERYRSRSRSASPDRIKDRRRGRDDVERRSASHSDRSMSP 196
                            R    RY SRSRS  P R + R R  D        H  RS+SP
Sbjct: 157 -----------------RRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSISP 216

Query: 197 ARHSPDTRRSISPRRTPPSRGRSDEEHSPRRDNGSPDDKPVDSRSPSPAKSDA 250
                D RRS S  R+P S G      +P R           SRS SP + +A
Sbjct: 217 REERYDGRRSYS--RSPASDGSRGRSLTPVRGK---------SRSLSPTQEEA 220

The following BLAST results are available for this feature:

BLAST of CmaCh05G004970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMG4	7.5e-66	63.14	Serine/arginine-rich splicing factor SC35 OS=Arabidopsis thaliana OX=3702 GN=SC3...	[more]
P30352	1.5e-26	44.39	Serine/arginine-rich splicing factor 2 OS=Gallus gallus OX=9031 GN=SRSF2 PE=2 SV...	[more]
Q3MHR5	2.6e-26	44.39	Serine/arginine-rich splicing factor 2 OS=Bos taurus OX=9913 GN=SRSF2 PE=2 SV=3	[more]
Q01130	2.6e-26	44.39	Serine/arginine-rich splicing factor 2 OS=Homo sapiens OX=9606 GN=SRSF2 PE=1 SV=...	[more]
Q62093	2.6e-26	44.39	Serine/arginine-rich splicing factor 2 OS=Mus musculus OX=10090 GN=Srsf2 PE=1 SV...	[more]

BLAST of CmaCh05G004970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64200.1	5.4e-67	63.14	ortholog of human splicing factor SC35	[more]
AT5G64200.2	5.4e-67	63.14	ortholog of human splicing factor SC35	[more]
AT1G55310.1	5.8e-13	37.94	SC35-like splicing factor 33	[more]
AT3G13570.1	1.9e-11	35.18	SC35-like splicing factor 30A	[more]
AT1G55310.2	5.4e-11	33.91	SC35-like splicing factor 33	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..90 e-value: 5.3E-25 score: 99.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..87 e-value: 6.4E-21 score: 74.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..94 score: 19.570105
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..105 e-value: 8.8E-28 score: 99.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..115
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..250
None	No IPR available	PANTHER	PTHR23147:SF161	OS08G0486200 PROTEIN	coord: 1..250
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G004970.1	CmaCh05G004970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding