Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAAGTACAAGAACAAGATGCTTCTTCTTCAAATCGTATCGACGACGACGGCTTCGATTCCCTTCCCGATTCTCTCGTTCTTCTGATCTTCAATTCTGTCTGCGATGTCAAAACCTTGATCCGTTGCAGAGCCGTCTCGAAGCGCTTCAACTCCCTCGTTCCTCATTCCGATTCCCTTTTTCTCAAGATCGATTGTATCATTTCCTCCGATTCCGATTCCGATTCGGATTCCGGCCCTAACTCTCACCTCTTCAACTTCTTTAAATCTACCGTTAAATCCTTCTTCTATTTTATTTCCTCTATTCTCCTCAAATCCAAATTGCAGAAGTCTCCCGCGCAAATCCTCCGCCAGTTCTACTGGATCCAGCGCCTCCAGATCGAGTTTCCGACTAAAGATTTTGAAATTGAGAGAGTCGTTAAATGGAGAGCGGAGTTCGGTGATGCGCTTAGGAACTGTGTGATTTTGAGTTTTGAAAAGATTAGGAACTCCGATGGTCGAGAGGTGATGGAAGTGGATGGTGTTGATTTCGGTTTTGTCACAGGGATGAAAGCGAAAGTGCTCTGGATGATGGGCGCTCTGATGACGGCATCGGCGAGGCACCACGTGATGGCGGAGGTGGTGGTGGAGCATTTGGAGATGAAGAATCTGGTGTTGAGAGACAGGGGAGGGAATGGTGTGGTGGTGATGGAGGAGAATAGTTTAGAGGATTTTAGGAGATCGAGAATGTGCGGCGGCGGAGAGGCAGCGGGGAGGTGGCAGATGAGAACTAGGATACCGAGCACGACGGTGAGGATGAAGTACTGGCCGTTGCTGGAGATCCGGCAAGGGCTCTGTATGGAGGATGCTACGTTGGTGGTGGTGAGGCCCACTGGAAATGCCAGCATAGATGAATCTACTGACGTGGAGAAAGAAGACGCTGACTTGGCACTGAGCGCATTTGAAGATGATGATGTGTACACAAACGCCGTGGCAGCGTTATTGACGAAGGGTAAGAGGTTTCAGTTTGAGATAAACTCTTTCTAG
mRNA sequence
ATGGCGGAAGTACAAGAACAAGATGCTTCTTCTTCAAATCGTATCGACGACGACGGCTTCGATTCCCTTCCCGATTCTCTCGTTCTTCTGATCTTCAATTCTGTCTGCGATGTCAAAACCTTGATCCGTTGCAGAGCCGTCTCGAAGCGCTTCAACTCCCTCGTTCCTCATTCCGATTCCCTTTTTCTCAAGATCGATTGTATCATTTCCTCCGATTCCGATTCCGATTCGGATTCCGGCCCTAACTCTCACCTCTTCAACTTCTTTAAATCTACCGTTAAATCCTTCTTCTATTTTATTTCCTCTATTCTCCTCAAATCCAAATTGCAGAAGTCTCCCGCGCAAATCCTCCGCCAGTTCTACTGGATCCAGCGCCTCCAGATCGAGTTTCCGACTAAAGATTTTGAAATTGAGAGAGTCGTTAAATGGAGAGCGGAGTTCGGTGATGCGCTTAGGAACTGTGTGATTTTGAGTTTTGAAAAGATTAGGAACTCCGATGGTCGAGAGGTGATGGAAGTGGATGGTGTTGATTTCGGTTTTGTCACAGGGATGAAAGCGAAAGTGCTCTGGATGATGGGCGCTCTGATGACGGCATCGGCGAGGCACCACGTGATGGCGGAGGTGGTGGTGGAGCATTTGGAGATGAAGAATCTGGTGTTGAGAGACAGGGGAGGGAATGGTGTGGTGGTGATGGAGGAGAATAGTTTAGAGGATTTTAGGAGATCGAGAATGTGCGGCGGCGGAGAGGCAGCGGGGAGGTGGCAGATGAGAACTAGGATACCGAGCACGACGGTGAGGATGAAGTACTGGCCGTTGCTGGAGATCCGGCAAGGGCTCTGTATGGAGGATGCTACGTTGGTGGTGGTGAGGCCCACTGGAAATGCCAGCATAGATGAATCTACTGACGTGGAGAAAGAAGACGCTGACTTGGCACTGAGCGCATTTGAAGATGATGATGTGTACACAAACGCCGTGGCAGCGTTATTGACGAAGGGTAAGAGGTTTCAGTTTGAGATAAACTCTTTCTAG
Coding sequence (CDS)
ATGGCGGAAGTACAAGAACAAGATGCTTCTTCTTCAAATCGTATCGACGACGACGGCTTCGATTCCCTTCCCGATTCTCTCGTTCTTCTGATCTTCAATTCTGTCTGCGATGTCAAAACCTTGATCCGTTGCAGAGCCGTCTCGAAGCGCTTCAACTCCCTCGTTCCTCATTCCGATTCCCTTTTTCTCAAGATCGATTGTATCATTTCCTCCGATTCCGATTCCGATTCGGATTCCGGCCCTAACTCTCACCTCTTCAACTTCTTTAAATCTACCGTTAAATCCTTCTTCTATTTTATTTCCTCTATTCTCCTCAAATCCAAATTGCAGAAGTCTCCCGCGCAAATCCTCCGCCAGTTCTACTGGATCCAGCGCCTCCAGATCGAGTTTCCGACTAAAGATTTTGAAATTGAGAGAGTCGTTAAATGGAGAGCGGAGTTCGGTGATGCGCTTAGGAACTGTGTGATTTTGAGTTTTGAAAAGATTAGGAACTCCGATGGTCGAGAGGTGATGGAAGTGGATGGTGTTGATTTCGGTTTTGTCACAGGGATGAAAGCGAAAGTGCTCTGGATGATGGGCGCTCTGATGACGGCATCGGCGAGGCACCACGTGATGGCGGAGGTGGTGGTGGAGCATTTGGAGATGAAGAATCTGGTGTTGAGAGACAGGGGAGGGAATGGTGTGGTGGTGATGGAGGAGAATAGTTTAGAGGATTTTAGGAGATCGAGAATGTGCGGCGGCGGAGAGGCAGCGGGGAGGTGGCAGATGAGAACTAGGATACCGAGCACGACGGTGAGGATGAAGTACTGGCCGTTGCTGGAGATCCGGCAAGGGCTCTGTATGGAGGATGCTACGTTGGTGGTGGTGAGGCCCACTGGAAATGCCAGCATAGATGAATCTACTGACGTGGAGAAAGAAGACGCTGACTTGGCACTGAGCGCATTTGAAGATGATGATGTGTACACAAACGCCGTGGCAGCGTTATTGACGAAGGGTAAGAGGTTTCAGTTTGAGATAAACTCTTTCTAG
Protein sequence
MAEVQEQDASSSNRIDDDGFDSLPDSLVLLIFNSVCDVKTLIRCRAVSKRFNSLVPHSDSLFLKIDCIISSDSDSDSDSGPNSHLFNFFKSTVKSFFYFISSILLKSKLQKSPAQILRQFYWIQRLQIEFPTKDFEIERVVKWRAEFGDALRNCVILSFEKIRNSDGREVMEVDGVDFGFVTGMKAKVLWMMGALMTASARHHVMAEVVVEHLEMKNLVLRDRGGNGVVVMEENSLEDFRRSRMCGGGEAAGRWQMRTRIPSTTVRMKYWPLLEIRQGLCMEDATLVVVRPTGNASIDESTDVEKEDADLALSAFEDDDVYTNAVAALLTKGKRFQFEINSF
Homology
BLAST of CmaCh05G004940 vs. ExPASy Swiss-Prot
Match:
Q9C9S2 (F-box protein AUF1 OS=Arabidopsis thaliana OX=3702 GN=AUF1 PE=1 SV=1)
HSP 1 Score: 228.0 bits (580), Expect = 1.6e-58
Identity = 142/341 (41.64%), Postives = 209/341 (61.29%), Query Frame = 0
Query: 18 DGFDSLPDSLVLLIFNSVCDVKTLIRCRAVSKRFNSLVPHSDSLFLKIDCIISSDSDSDS 77
D FD++PD +V+ I N V DVKTLIRCR+VSKRFNSL S+SL L++D I+ + ++S
Sbjct: 2 DAFDAIPDPVVIDILNRVGDVKTLIRCRSVSKRFNSLATQSESLLLQLDQILGA---TES 61
Query: 78 DSGPNSHLFNFFKSTVKSFFYFISSILLK--------SKLQKSPAQILRQFYWIQRLQIE 137
DS +S + +FF+S KS + I K ++ K+PAQIL F I+ L++E
Sbjct: 62 DSEIDSPIASFFRSLFKSIHGLLPPIFSKPANSDEILTRSPKTPAQILSGFERIRNLEVE 121
Query: 138 FPTKDFEIER--VVKWRAEFGDALRNCVILSFEK--IRNSDGREVME-VDGV---DFGFV 197
D ++E+ VKW+AEFG L++CVI++F + S E VDGV D FV
Sbjct: 122 LYGGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSATVNTSAATEAAAVVDGVVESDSEFV 181
Query: 198 TGMKAKVLWMMGALMTASARHHVMAEVVVEHLEMKNLVLRDRGGNGVVVMEENSLEDFRR 257
G+K +V+W + ALM AS RH++M ++V +H EM+ L++RD G G VVM+ ++++R
Sbjct: 182 CGLKTRVVWTISALMAASTRHYLMRDLVKDHKEMEKLIVRDSDGEGTVVMDAAGMKEYRE 241
Query: 258 SRMCGGGEAAGRWQMRTRIPSTTVRMKYWPLLEIRQGLCMEDATLVVVRPTGNASIDEST 317
+ + G + + R RT +PS + M++ P L ++ G+C+E ATLVVVRPTG AS D
Sbjct: 242 TEVRGDNKESERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVRPTGVASDDNDV 301
Query: 318 DVEKEDADLALSAFEDDDVYTNAVAALLTKGKRFQFEINSF 343
++ E A + DD +Y AV ALL K +R E+NSF
Sbjct: 302 ELVTE----AFAGDGDDCMYGEAVTALL-KRRRNVLEMNSF 334
BLAST of CmaCh05G004940 vs. ExPASy Swiss-Prot
Match:
Q9LM18 (F-box protein AUF2 OS=Arabidopsis thaliana OX=3702 GN=AUF2 PE=2 SV=1)
HSP 1 Score: 208.4 bits (529), Expect = 1.3e-52
Identity = 136/328 (41.46%), Postives = 194/328 (59.15%), Query Frame = 0
Query: 18 DGFDSLPDSLVLLIFNSVCDVKTLIRCRAVSKRFNSLVPHSDSLFLKIDCIISSDSDSDS 77
D FD LPD +++ I N V DVKTL+RC ++SKRFNSLVP S+SL L++D S SDS
Sbjct: 2 DVFDGLPDPIIVDILNKVGDVKTLLRCSSLSKRFNSLVPQSESLTLRLD---HSVSDSPV 61
Query: 78 DSGPNSHLFNFFKSTVKSFFYFISSILLKSKLQKSPAQILRQFYWIQRLQIEFPTKDFEI 137
+ LFN S + I+ L L P +IL +F I+ L +E P D ++
Sbjct: 62 VTSIFRSLFNGLVSLLSKPAKPITITTLSPSL---PFKILSRFDRIRNLDVELPGGDVKL 121
Query: 138 ER--VVKWRAEFGDALRNCVILSFEKIRNSDGREVMEVDGVDFGFVTGMKAKVLWMMGAL 197
E+ VKW+AEFG L++CVI++F +E + D FVTG+K +V+W + AL
Sbjct: 122 EKGAAVKWKAEFGKTLKSCVIVAFRSAGTVSSPVAVEGES-DAEFVTGLKTRVVWTISAL 181
Query: 198 MTASARHHVMAEVVVEHLEMKNLVLRDRGGNGVVVMEENSLEDFRRSRMCGGGEAAGRWQ 257
M AS+RH++M EVV EH E+++LV+RD+ G VVM E L++ R + E
Sbjct: 182 MAASSRHYLMREVVKEHEEIESLVMRDKEREGTVVMNEEGLKELRNTEARVEDEERVVKN 241
Query: 258 MRTRIPSTTVRMKYWPLLEIRQGLCMEDATLVVVRPTGNASIDESTDVE-KEDADLALSA 317
R+ +PS + M++ P L+++ G+C+E ATLV+VRP+G D E +DA+LA A
Sbjct: 242 KRSVVPSVRMSMRHAPSLKLKSGICLESATLVIVRPSG-------ADFEVGDDAELATEA 301
Query: 318 FEDDDVYTNAVAALLTKGKRFQFEINSF 343
F D +Y AV ALL K K+ E+NSF
Sbjct: 302 FVGDCMYGEAVVALL-KCKKNALEMNSF 314
BLAST of CmaCh05G004940 vs. ExPASy Swiss-Prot
Match:
O49508 (F-box protein At4g18380 OS=Arabidopsis thaliana OX=3702 GN=At4g18380 PE=2 SV=1)
HSP 1 Score: 176.8 bits (447), Expect = 4.2e-43
Identity = 123/373 (32.98%), Postives = 194/373 (52.01%), Query Frame = 0
Query: 18 DGFDSLPDSLVLLIFNSVCDVKTLIRCRAVSKRFNSLVPHSDSLFLKIDCIISSDSDSD- 77
D FD+LPDS++LLIFN++ DVK L RC VSKRF+SL+P +++F+++DC+IS D S
Sbjct: 23 DHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVENVFVRVDCVISDDDSSSL 82
Query: 78 --------SDSGPNSHLFNFFKSTVKSFFYFI--------------SSILLK-------- 137
S + P S +F +++ F+ SS+L+
Sbjct: 83 LSDKPRSASAASPFSAIFRLVFKPLQALGQFLKRSGSSSLPSGSSPSSLLISGGDDGEIE 142
Query: 138 --SKLQKSPAQILRQFYWIQRLQIEFPTKDFEIER--VVKWRAEFGDALRNCVILSFEKI 197
SP Q+L+ F I+ L+IE P+ + I+ ++KWRAEFG L NCVIL +
Sbjct: 143 QGGVTHHSPTQVLKNFDEIKFLKIELPSGELGIDDGVLLKWRAEFGSTLENCVILGASSV 202
Query: 198 ---RNSDGRE--------VMEVDGVDFGFVT--GMKAKVLWMMGALMTASARHHVMAEVV 257
NSD E V + + F T G+K +V+W + +L+ ASARH+++ ++
Sbjct: 203 IPPTNSDKTEASSAPVAAVEDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII 262
Query: 258 VEHLEMKNLVLRDRGGNGVVVMEENSLEDFRRSRMCGGGEAAGRWQMRTRIPSTTVRMKY 317
EH + +LVL D G GV+ M + LE+ R + +A RT +P+ +R+ Y
Sbjct: 263 AEHKTLDSLVLTDVDGQGVLCMNRDQLEELRVKPL-----SASSASKRTLVPALNMRLWY 322
Query: 318 WPLLEIRQGLCMEDATLVVVRPTGNASIDESTDVEKEDADLALSAFEDDDVYTNAVAALL 343
P LE+ G ++ ATLV +RP ++ +KE D++ + D+ Y A +L
Sbjct: 323 APSLELPDGTVLKGATLVAIRP---------SESKKEVCDVSWVSSAFDEPY-GVAAKML 380
BLAST of CmaCh05G004940 vs. ExPASy Swiss-Prot
Match:
Q9C534 (F-box protein At1g30200 OS=Arabidopsis thaliana OX=3702 GN=At1g30200 PE=2 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 6.7e-41
Identity = 124/371 (33.42%), Postives = 185/371 (49.87%), Query Frame = 0
Query: 18 DGFDSLPDSLVLLIFNSVCDVKTLIRCRAVSKRFNSLVPHSDSLFLKIDCIISSDSDSDS 77
D FD LPDSL+LLIF+ V DVK L RC VS+RF+SLVP +++ +++DC+IS D S S
Sbjct: 24 DHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHSLVPFVENVLVRVDCVISDDDSSSS 83
Query: 78 D------------------SGPNSHLFNFFKSTVKSFFYFISSILLKSK----------- 137
D G S LF + + F + IL +
Sbjct: 84 DENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFKPFQMLGQILGPKRSSSSFDASFSA 143
Query: 138 -------LQKSPAQILRQFYWIQRLQIEFPTKDFEIER--VVKWRAEFGDALRNCVILSF 197
SP Q+L+ F I+ L+IE PT + IE ++KWRA+FG L NC+IL
Sbjct: 144 INDEIGVTHHSPTQVLKNFGEIRFLKIELPTGELGIEDGILLKWRADFGSTLDNCMILGA 203
Query: 198 EKIRNSDG-----REVMEVDG-VDFGFVT--GMKAKVLWMMGALMTASARHHVMAEVVVE 257
+ S+ V E +G + F T G+K +V+W + +L+ ASARH+++ ++ E
Sbjct: 204 SSVIQSNSVKNHENSVDEDNGNIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIINE 263
Query: 258 HLEMKNLVLRDRGGNGVVVMEENSLEDFRRSRMCGGGEAAGRWQMRTRIPSTTVRMKYWP 317
H + LVL D G GV+ M LE+ R + + +A RT +P+ +R+ Y P
Sbjct: 264 HKSLDRLVLSDADGQGVLCMNREQLEELRVTPL-----SASSASKRTLVPALNMRLWYAP 323
Query: 318 LLEIRQGLCMEDATLVVVRPTGNASIDESTDVEKEDADLALSAFEDDDVYTNAVAALLTK 343
L++ G ++ ATLV +RP+ + E DA AFE+ VA +L K
Sbjct: 324 ELDLPDGTVLKGATLVAIRPS-------ESKKEVCDASWLSDAFEEP---FGTVAKMLIK 379
BLAST of CmaCh05G004940 vs. ExPASy Swiss-Prot
Match:
Q9FNK5 (F-box protein At5g46170 OS=Arabidopsis thaliana OX=3702 GN=At5g46170 PE=2 SV=1)
HSP 1 Score: 165.6 bits (418), Expect = 9.7e-40
Identity = 125/389 (32.13%), Postives = 193/389 (49.61%), Query Frame = 0
Query: 15 IDDDGFDSLPDSLVLLIFNSVCDVKTLIRCRAVSKRFNSLVPHSDSLFLKIDCIISSD-- 74
++ D FD LPDS++LL+FN + DVK L RC VS+RF+SLVP D++ +++DC+IS D
Sbjct: 22 LEIDHFDHLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDS 81
Query: 75 -------SDSDSDSGPNSHLFNF--------------FKSTVKSFFYFISSILLKSKL-- 134
S S S +G S +F F T +S S S L
Sbjct: 82 SSLSSIKSRSGSSAGSFSAIFRLVVGGIVKPLQALGQFLGTKRSSSSCGGSGSSSSSLSI 141
Query: 135 ---------------QKSPAQILRQFYWIQRLQIEFPTKDFEIER--VVKWRAEFGDALR 194
SP Q+L+ F I+ L+IE P+ + I+ ++KWRAEFG L
Sbjct: 142 SGDDDGGEIEQGGVTHHSPTQVLKNFDEIRYLRIELPSGELGIDDGVLLKWRAEFGSTLD 201
Query: 195 NCVILSFEKI---------RNSDGREVMEVDG--------VDFGFVT--GMKAKVLWMMG 254
NCVIL + + D V+E G + F T G+K +V+W +
Sbjct: 202 NCVILGASSVIPPNPMRVSQACDTTTVVEAPGSGSDDNGSIPESFYTNGGLKLRVVWTIS 261
Query: 255 ALMTASARHHVMAEVVVEHLEMKNLVLRDRGGNGVVVMEENSLEDFRRSRMCGGGEAAGR 314
+L+ ASARH+++ ++ EH + +LVL D G GV+ M + LE+ R + AA
Sbjct: 262 SLIAASARHYLLQPIIAEHKTLDSLVLTDSDGQGVLCMNRDQLEELRVKPL-----AASS 321
Query: 315 WQMRTRIPSTTVRMKYWPLLEIRQGLCMEDATLVVVRPTGNASIDESTDVEKEDADLALS 343
RT +P+ +R+ Y P LE+ G ++ ATLV +RP ++ +KE +D++
Sbjct: 322 ASKRTLVPALNMRLWYAPTLELPDGTVLKGATLVAIRP---------SESKKEVSDISWV 381
BLAST of CmaCh05G004940 vs. TAIR 10
Match:
AT1G78100.1 (F-box family protein )
HSP 1 Score: 228.0 bits (580), Expect = 1.1e-59
Identity = 142/341 (41.64%), Postives = 209/341 (61.29%), Query Frame = 0
Query: 18 DGFDSLPDSLVLLIFNSVCDVKTLIRCRAVSKRFNSLVPHSDSLFLKIDCIISSDSDSDS 77
D FD++PD +V+ I N V DVKTLIRCR+VSKRFNSL S+SL L++D I+ + ++S
Sbjct: 2 DAFDAIPDPVVIDILNRVGDVKTLIRCRSVSKRFNSLATQSESLLLQLDQILGA---TES 61
Query: 78 DSGPNSHLFNFFKSTVKSFFYFISSILLK--------SKLQKSPAQILRQFYWIQRLQIE 137
DS +S + +FF+S KS + I K ++ K+PAQIL F I+ L++E
Sbjct: 62 DSEIDSPIASFFRSLFKSIHGLLPPIFSKPANSDEILTRSPKTPAQILSGFERIRNLEVE 121
Query: 138 FPTKDFEIER--VVKWRAEFGDALRNCVILSFEK--IRNSDGREVME-VDGV---DFGFV 197
D ++E+ VKW+AEFG L++CVI++F + S E VDGV D FV
Sbjct: 122 LYGGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSATVNTSAATEAAAVVDGVVESDSEFV 181
Query: 198 TGMKAKVLWMMGALMTASARHHVMAEVVVEHLEMKNLVLRDRGGNGVVVMEENSLEDFRR 257
G+K +V+W + ALM AS RH++M ++V +H EM+ L++RD G G VVM+ ++++R
Sbjct: 182 CGLKTRVVWTISALMAASTRHYLMRDLVKDHKEMEKLIVRDSDGEGTVVMDAAGMKEYRE 241
Query: 258 SRMCGGGEAAGRWQMRTRIPSTTVRMKYWPLLEIRQGLCMEDATLVVVRPTGNASIDEST 317
+ + G + + R RT +PS + M++ P L ++ G+C+E ATLVVVRPTG AS D
Sbjct: 242 TEVRGDNKESERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVRPTGVASDDNDV 301
Query: 318 DVEKEDADLALSAFEDDDVYTNAVAALLTKGKRFQFEINSF 343
++ E A + DD +Y AV ALL K +R E+NSF
Sbjct: 302 ELVTE----AFAGDGDDCMYGEAVTALL-KRRRNVLEMNSF 334
BLAST of CmaCh05G004940 vs. TAIR 10
Match:
AT1G22220.1 (F-box family protein )
HSP 1 Score: 208.4 bits (529), Expect = 9.3e-54
Identity = 136/328 (41.46%), Postives = 194/328 (59.15%), Query Frame = 0
Query: 18 DGFDSLPDSLVLLIFNSVCDVKTLIRCRAVSKRFNSLVPHSDSLFLKIDCIISSDSDSDS 77
D FD LPD +++ I N V DVKTL+RC ++SKRFNSLVP S+SL L++D S SDS
Sbjct: 2 DVFDGLPDPIIVDILNKVGDVKTLLRCSSLSKRFNSLVPQSESLTLRLD---HSVSDSPV 61
Query: 78 DSGPNSHLFNFFKSTVKSFFYFISSILLKSKLQKSPAQILRQFYWIQRLQIEFPTKDFEI 137
+ LFN S + I+ L L P +IL +F I+ L +E P D ++
Sbjct: 62 VTSIFRSLFNGLVSLLSKPAKPITITTLSPSL---PFKILSRFDRIRNLDVELPGGDVKL 121
Query: 138 ER--VVKWRAEFGDALRNCVILSFEKIRNSDGREVMEVDGVDFGFVTGMKAKVLWMMGAL 197
E+ VKW+AEFG L++CVI++F +E + D FVTG+K +V+W + AL
Sbjct: 122 EKGAAVKWKAEFGKTLKSCVIVAFRSAGTVSSPVAVEGES-DAEFVTGLKTRVVWTISAL 181
Query: 198 MTASARHHVMAEVVVEHLEMKNLVLRDRGGNGVVVMEENSLEDFRRSRMCGGGEAAGRWQ 257
M AS+RH++M EVV EH E+++LV+RD+ G VVM E L++ R + E
Sbjct: 182 MAASSRHYLMREVVKEHEEIESLVMRDKEREGTVVMNEEGLKELRNTEARVEDEERVVKN 241
Query: 258 MRTRIPSTTVRMKYWPLLEIRQGLCMEDATLVVVRPTGNASIDESTDVE-KEDADLALSA 317
R+ +PS + M++ P L+++ G+C+E ATLV+VRP+G D E +DA+LA A
Sbjct: 242 KRSVVPSVRMSMRHAPSLKLKSGICLESATLVIVRPSG-------ADFEVGDDAELATEA 301
Query: 318 FEDDDVYTNAVAALLTKGKRFQFEINSF 343
F D +Y AV ALL K K+ E+NSF
Sbjct: 302 FVGDCMYGEAVVALL-KCKKNALEMNSF 314
BLAST of CmaCh05G004940 vs. TAIR 10
Match:
AT4G18380.1 (F-box family protein )
HSP 1 Score: 176.8 bits (447), Expect = 3.0e-44
Identity = 123/373 (32.98%), Postives = 194/373 (52.01%), Query Frame = 0
Query: 18 DGFDSLPDSLVLLIFNSVCDVKTLIRCRAVSKRFNSLVPHSDSLFLKIDCIISSDSDSD- 77
D FD+LPDS++LLIFN++ DVK L RC VSKRF+SL+P +++F+++DC+IS D S
Sbjct: 23 DHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVENVFVRVDCVISDDDSSSL 82
Query: 78 --------SDSGPNSHLFNFFKSTVKSFFYFI--------------SSILLK-------- 137
S + P S +F +++ F+ SS+L+
Sbjct: 83 LSDKPRSASAASPFSAIFRLVFKPLQALGQFLKRSGSSSLPSGSSPSSLLISGGDDGEIE 142
Query: 138 --SKLQKSPAQILRQFYWIQRLQIEFPTKDFEIER--VVKWRAEFGDALRNCVILSFEKI 197
SP Q+L+ F I+ L+IE P+ + I+ ++KWRAEFG L NCVIL +
Sbjct: 143 QGGVTHHSPTQVLKNFDEIKFLKIELPSGELGIDDGVLLKWRAEFGSTLENCVILGASSV 202
Query: 198 ---RNSDGRE--------VMEVDGVDFGFVT--GMKAKVLWMMGALMTASARHHVMAEVV 257
NSD E V + + F T G+K +V+W + +L+ ASARH+++ ++
Sbjct: 203 IPPTNSDKTEASSAPVAAVEDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII 262
Query: 258 VEHLEMKNLVLRDRGGNGVVVMEENSLEDFRRSRMCGGGEAAGRWQMRTRIPSTTVRMKY 317
EH + +LVL D G GV+ M + LE+ R + +A RT +P+ +R+ Y
Sbjct: 263 AEHKTLDSLVLTDVDGQGVLCMNRDQLEELRVKPL-----SASSASKRTLVPALNMRLWY 322
Query: 318 WPLLEIRQGLCMEDATLVVVRPTGNASIDESTDVEKEDADLALSAFEDDDVYTNAVAALL 343
P LE+ G ++ ATLV +RP ++ +KE D++ + D+ Y A +L
Sbjct: 323 APSLELPDGTVLKGATLVAIRP---------SESKKEVCDVSWVSSAFDEPY-GVAAKML 380
BLAST of CmaCh05G004940 vs. TAIR 10
Match:
AT4G18380.2 (F-box family protein )
HSP 1 Score: 176.8 bits (447), Expect = 3.0e-44
Identity = 123/373 (32.98%), Postives = 194/373 (52.01%), Query Frame = 0
Query: 18 DGFDSLPDSLVLLIFNSVCDVKTLIRCRAVSKRFNSLVPHSDSLFLKIDCIISSDSDSD- 77
D FD+LPDS++LLIFN++ DVK L RC VSKRF+SL+P +++F+++DC+IS D S
Sbjct: 23 DHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVENVFVRVDCVISDDDSSSL 82
Query: 78 --------SDSGPNSHLFNFFKSTVKSFFYFI--------------SSILLK-------- 137
S + P S +F +++ F+ SS+L+
Sbjct: 83 LSDKPRSASAASPFSAIFRLVFKPLQALGQFLKRSGSSSLPSGSSPSSLLISGGDDGEIE 142
Query: 138 --SKLQKSPAQILRQFYWIQRLQIEFPTKDFEIER--VVKWRAEFGDALRNCVILSFEKI 197
SP Q+L+ F I+ L+IE P+ + I+ ++KWRAEFG L NCVIL +
Sbjct: 143 QGGVTHHSPTQVLKNFDEIKFLKIELPSGELGIDDGVLLKWRAEFGSTLENCVILGASSV 202
Query: 198 ---RNSDGRE--------VMEVDGVDFGFVT--GMKAKVLWMMGALMTASARHHVMAEVV 257
NSD E V + + F T G+K +V+W + +L+ ASARH+++ ++
Sbjct: 203 IPPTNSDKTEASSAPVAAVEDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII 262
Query: 258 VEHLEMKNLVLRDRGGNGVVVMEENSLEDFRRSRMCGGGEAAGRWQMRTRIPSTTVRMKY 317
EH + +LVL D G GV+ M + LE+ R + +A RT +P+ +R+ Y
Sbjct: 263 AEHKTLDSLVLTDVDGQGVLCMNRDQLEELRVKPL-----SASSASKRTLVPALNMRLWY 322
Query: 318 WPLLEIRQGLCMEDATLVVVRPTGNASIDESTDVEKEDADLALSAFEDDDVYTNAVAALL 343
P LE+ G ++ ATLV +RP ++ +KE D++ + D+ Y A +L
Sbjct: 323 APSLELPDGTVLKGATLVAIRP---------SESKKEVCDVSWVSSAFDEPY-GVAAKML 380
BLAST of CmaCh05G004940 vs. TAIR 10
Match:
AT1G30200.2 (F-box family protein )
HSP 1 Score: 169.5 bits (428), Expect = 4.8e-42
Identity = 124/371 (33.42%), Postives = 185/371 (49.87%), Query Frame = 0
Query: 18 DGFDSLPDSLVLLIFNSVCDVKTLIRCRAVSKRFNSLVPHSDSLFLKIDCIISSDSDSDS 77
D FD LPDSL+LLIF+ V DVK L RC VS+RF+SLVP +++ +++DC+IS D S S
Sbjct: 24 DHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHSLVPFVENVLVRVDCVISDDDSSSS 83
Query: 78 D------------------SGPNSHLFNFFKSTVKSFFYFISSILLKSK----------- 137
D G S LF + + F + IL +
Sbjct: 84 DENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFKPFQMLGQILGPKRSSSSFDASFSA 143
Query: 138 -------LQKSPAQILRQFYWIQRLQIEFPTKDFEIER--VVKWRAEFGDALRNCVILSF 197
SP Q+L+ F I+ L+IE PT + IE ++KWRA+FG L NC+IL
Sbjct: 144 INDEIGVTHHSPTQVLKNFGEIRFLKIELPTGELGIEDGILLKWRADFGSTLDNCMILGA 203
Query: 198 EKIRNSDG-----REVMEVDG-VDFGFVT--GMKAKVLWMMGALMTASARHHVMAEVVVE 257
+ S+ V E +G + F T G+K +V+W + +L+ ASARH+++ ++ E
Sbjct: 204 SSVIQSNSVKNHENSVDEDNGNIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIINE 263
Query: 258 HLEMKNLVLRDRGGNGVVVMEENSLEDFRRSRMCGGGEAAGRWQMRTRIPSTTVRMKYWP 317
H + LVL D G GV+ M LE+ R + + +A RT +P+ +R+ Y P
Sbjct: 264 HKSLDRLVLSDADGQGVLCMNREQLEELRVTPL-----SASSASKRTLVPALNMRLWYAP 323
Query: 318 LLEIRQGLCMEDATLVVVRPTGNASIDESTDVEKEDADLALSAFEDDDVYTNAVAALLTK 343
L++ G ++ ATLV +RP+ + E DA AFE+ VA +L K
Sbjct: 324 ELDLPDGTVLKGATLVAIRPS-------ESKKEVCDASWLSDAFEEP---FGTVAKMLIK 379
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9C9S2 | 1.6e-58 | 41.64 | F-box protein AUF1 OS=Arabidopsis thaliana OX=3702 GN=AUF1 PE=1 SV=1 | [more] |
| Q9LM18 | 1.3e-52 | 41.46 | F-box protein AUF2 OS=Arabidopsis thaliana OX=3702 GN=AUF2 PE=2 SV=1 | [more] |
| O49508 | 4.2e-43 | 32.98 | F-box protein At4g18380 OS=Arabidopsis thaliana OX=3702 GN=At4g18380 PE=2 SV=1 | [more] |
| Q9C534 | 6.7e-41 | 33.42 | F-box protein At1g30200 OS=Arabidopsis thaliana OX=3702 GN=At1g30200 PE=2 SV=1 | [more] |
| Q9FNK5 | 9.7e-40 | 32.13 | F-box protein At5g46170 OS=Arabidopsis thaliana OX=3702 GN=At5g46170 PE=2 SV=1 | [more] |
