Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAAGTTCAAGAACAAGATGCTTCTTCTTCAATTCGCGTCGCCGGTGACGGCTTCGATTCTCTTCCAGATTCCCTCGTTCTTGTGATATTTAACTTTGTCTCCGATGTCAAAGCCTTGATCCGTTGCAGAGCCGTTTCGAAGCGCTTCAACTCCCTCGTTCCTCATTCCGATTCCCTTTTTCTCAAGATCGACTGTTCCATTTCCTCCGATTCCGAGTCCGATTCCGATTCCGATTCCGTTCCAACCTCCAATTTATTCGACTTCTTTCAAACTACCTTGCAATCCTTCTTCTATTTTATGTCCCCTGTTTTCCTCAAATCCAAATCGCAGAAGTCTCCCGCGCAAATCCTCCGTCAGTTCCACCGGATCCAGCGCCTCCAGATCGAGTTTCCGACTAAGGGCCTTGAAGTTTCGAGAGCCGTTAAATGGAGAGCGGAGTTCGGTGATACGCTTAGGAGCTGCGTGATTTTGAGTTTTCAAAAGATTAGGAAATTCGATGGTCGGGCGATGATGGCTGTGGATAATTTCGGTGTCGATTTCTTCCCAGGGATGGAAGCGAGAGTGACCTGGTTGATGCGCACTCTGATAACGGCGTTGGCGAGGCACCACGTGATGGCGGAGGTGGTGGTAGAGCATTTGGAGATGAAGCATCTGGTGTTGAGAGACGGGGAAGGGAATGGTGTGGTGGTGATCGAGAAGAATGGTTTAGAGGATTTTAGGAGATCGAGAGTTTGCGGCGACGGCGGAGAGACATCGGAGAGACGGACGGCGGAGAGGCGGACGTTGAGAACTAGAGTACCGAGAACGACGGTAAGGATGAAGTACTGGCCGTTGCTCGATCTCCAGCACGGGTTCTGTATGGAGGACGCTACGTTGGTGGTGGTGAGGCCCACTGGAAATGCCAGCGAGGATGAAACTGCTGACATGCGGAAAGAAGACGCTGACTTGGCACTGAGAGCATTTGAAGATAATGATGTGTACACAGTCGCCGTGGCAGAGTTATTGACGAAGGGTACTAGGTTTAAGATGTTGATAAACTCTTTCTAG
mRNA sequence
ATGGCGGAAGTTCAAGAACAAGATGCTTCTTCTTCAATTCGCGTCGCCGGTGACGGCTTCGATTCTCTTCCAGATTCCCTCGTTCTTGTGATATTTAACTTTGTCTCCGATGTCAAAGCCTTGATCCGTTGCAGAGCCGTTTCGAAGCGCTTCAACTCCCTCGTTCCTCATTCCGATTCCCTTTTTCTCAAGATCGACTGTTCCATTTCCTCCGATTCCGAGTCCGATTCCGATTCCGATTCCGTTCCAACCTCCAATTTATTCGACTTCTTTCAAACTACCTTGCAATCCTTCTTCTATTTTATGTCCCCTGTTTTCCTCAAATCCAAATCGCAGAAGTCTCCCGCGCAAATCCTCCGTCAGTTCCACCGGATCCAGCGCCTCCAGATCGAGTTTCCGACTAAGGGCCTTGAAGTTTCGAGAGCCGTTAAATGGAGAGCGGAGTTCGGTGATACGCTTAGGAGCTGCGTGATTTTGAGTTTTCAAAAGATTAGGAAATTCGATGGTCGGGCGATGATGGCTGTGGATAATTTCGGTGTCGATTTCTTCCCAGGGATGGAAGCGAGAGTGACCTGGTTGATGCGCACTCTGATAACGGCGTTGGCGAGGCACCACGTGATGGCGGAGGTGGTGGTAGAGCATTTGGAGATGAAGCATCTGGTGTTGAGAGACGGGGAAGGGAATGGTGTGGTGGTGATCGAGAAGAATGGTTTAGAGGATTTTAGGAGATCGAGAGTTTGCGGCGACGGCGGAGAGACATCGGAGAGACGGACGGCGGAGAGGCGGACGTTGAGAACTAGAGTACCGAGAACGACGGTAAGGATGAAGTACTGGCCGTTGCTCGATCTCCAGCACGGGTTCTGTATGGAGGACGCTACGTTGGTGGTGGTGAGGCCCACTGGAAATGCCAGCGAGGATGAAACTGCTGACATGCGGAAAGAAGACGCTGACTTGGCACTGAGAGCATTTGAAGATAATGATGTGTACACAGTCGCCGTGGCAGAGTTATTGACGAAGGGTACTAGGTTTAAGATGTTGATAAACTCTTTCTAG
Coding sequence (CDS)
ATGGCGGAAGTTCAAGAACAAGATGCTTCTTCTTCAATTCGCGTCGCCGGTGACGGCTTCGATTCTCTTCCAGATTCCCTCGTTCTTGTGATATTTAACTTTGTCTCCGATGTCAAAGCCTTGATCCGTTGCAGAGCCGTTTCGAAGCGCTTCAACTCCCTCGTTCCTCATTCCGATTCCCTTTTTCTCAAGATCGACTGTTCCATTTCCTCCGATTCCGAGTCCGATTCCGATTCCGATTCCGTTCCAACCTCCAATTTATTCGACTTCTTTCAAACTACCTTGCAATCCTTCTTCTATTTTATGTCCCCTGTTTTCCTCAAATCCAAATCGCAGAAGTCTCCCGCGCAAATCCTCCGTCAGTTCCACCGGATCCAGCGCCTCCAGATCGAGTTTCCGACTAAGGGCCTTGAAGTTTCGAGAGCCGTTAAATGGAGAGCGGAGTTCGGTGATACGCTTAGGAGCTGCGTGATTTTGAGTTTTCAAAAGATTAGGAAATTCGATGGTCGGGCGATGATGGCTGTGGATAATTTCGGTGTCGATTTCTTCCCAGGGATGGAAGCGAGAGTGACCTGGTTGATGCGCACTCTGATAACGGCGTTGGCGAGGCACCACGTGATGGCGGAGGTGGTGGTAGAGCATTTGGAGATGAAGCATCTGGTGTTGAGAGACGGGGAAGGGAATGGTGTGGTGGTGATCGAGAAGAATGGTTTAGAGGATTTTAGGAGATCGAGAGTTTGCGGCGACGGCGGAGAGACATCGGAGAGACGGACGGCGGAGAGGCGGACGTTGAGAACTAGAGTACCGAGAACGACGGTAAGGATGAAGTACTGGCCGTTGCTCGATCTCCAGCACGGGTTCTGTATGGAGGACGCTACGTTGGTGGTGGTGAGGCCCACTGGAAATGCCAGCGAGGATGAAACTGCTGACATGCGGAAAGAAGACGCTGACTTGGCACTGAGAGCATTTGAAGATAATGATGTGTACACAGTCGCCGTGGCAGAGTTATTGACGAAGGGTACTAGGTTTAAGATGTTGATAAACTCTTTCTAG
Protein sequence
MAEVQEQDASSSIRVAGDGFDSLPDSLVLVIFNFVSDVKALIRCRAVSKRFNSLVPHSDSLFLKIDCSISSDSESDSDSDSVPTSNLFDFFQTTLQSFFYFMSPVFLKSKSQKSPAQILRQFHRIQRLQIEFPTKGLEVSRAVKWRAEFGDTLRSCVILSFQKIRKFDGRAMMAVDNFGVDFFPGMEARVTWLMRTLITALARHHVMAEVVVEHLEMKHLVLRDGEGNGVVVIEKNGLEDFRRSRVCGDGGETSERRTAERRTLRTRVPRTTVRMKYWPLLDLQHGFCMEDATLVVVRPTGNASEDETADMRKEDADLALRAFEDNDVYTVAVAELLTKGTRFKMLINSF
Homology
BLAST of CmaCh05G004930 vs. ExPASy Swiss-Prot
Match:
Q9C9S2 (F-box protein AUF1 OS=Arabidopsis thaliana OX=3702 GN=AUF1 PE=1 SV=1)
HSP 1 Score: 212.2 bits (539), Expect = 9.2e-54
Identity = 144/352 (40.91%), Postives = 203/352 (57.67%), Query Frame = 0
Query: 18 DGFDSLPDSLVLVIFNFVSDVKALIRCRAVSKRFNSLVPHSDSLFLKIDCSISSDSESDS 77
D FD++PD +V+ I N V DVK LIRCR+VSKRFNSL S+SL L++D I +ESDS
Sbjct: 2 DAFDAIPDPVVIDILNRVGDVKTLIRCRSVSKRFNSLATQSESLLLQLD-QILGATESDS 61
Query: 78 DSDSVPTSNLFDFFQTTLQSFFYFMSPVFLK--------SKSQKSPAQILRQFHRIQRLQ 137
+ DS S FF++ +S + P+F K ++S K+PAQIL F RI+ L+
Sbjct: 62 EIDSPIAS----FFRSLFKSIHGLLPPIFSKPANSDEILTRSPKTPAQILSGFERIRNLE 121
Query: 138 IEF--PTKGLEVSRAVKWRAEFGDTLRSCVILSFQKIRKFDGRAMMA------VDNFGVD 197
+E LE AVKW+AEFG TL+SCVI++F+ A A V +
Sbjct: 122 VELYGGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSATVNTSAATEAAAVVDGVVESDSE 181
Query: 198 FFPGMEARVTWLMRTLITALARHHVMAEVVVEHLEMKHLVLRDGEGNGVVVIEKNGLEDF 257
F G++ RV W + L+ A RH++M ++V +H EM+ L++RD +G G VV++ G++++
Sbjct: 182 FVCGLKTRVVWTISALMAASTRHYLMRDLVKDHKEMEKLIVRDSDGEGTVVMDAAGMKEY 241
Query: 258 RRSRVCGDGGETSERRTAERRTLRTRVPRTTVRMKYWPLLDLQHGFCMEDATLVVVRPTG 317
R + V GD E +ER RT VP + M++ P L L+ G C+E ATLVVVRPTG
Sbjct: 242 RETEVRGDNKE------SERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVRPTG 301
Query: 318 NASEDETADMRKEDADLALRAFE---DNDVYTVAVAELLTKGTRFKMLINSF 351
AS+D D +L AF D+ +Y AV LL K R + +NSF
Sbjct: 302 VASDD-------NDVELVTEAFAGDGDDCMYGEAVTALL-KRRRNVLEMNSF 334
BLAST of CmaCh05G004930 vs. ExPASy Swiss-Prot
Match:
Q9LM18 (F-box protein AUF2 OS=Arabidopsis thaliana OX=3702 GN=AUF2 PE=2 SV=1)
HSP 1 Score: 191.4 bits (485), Expect = 1.7e-47
Identity = 128/335 (38.21%), Postives = 188/335 (56.12%), Query Frame = 0
Query: 18 DGFDSLPDSLVLVIFNFVSDVKALIRCRAVSKRFNSLVPHSDSLFLKIDCSISSDSESDS 77
D FD LPD +++ I N V DVK L+RC ++SKRFNSLVP S+SL L++D S+S
Sbjct: 2 DVFDGLPDPIIVDILNKVGDVKTLLRCSSLSKRFNSLVPQSESLTLRLDHSVS------- 61
Query: 78 DSDSVPTSNLFDFFQTTLQSFFYFMSPVFLKSKSQKSPAQILRQFHRIQRLQIEFP--TK 137
V TS F + P+ + + S P +IL +F RI+ L +E P
Sbjct: 62 -DSPVVTSIFRSLFNGLVSLLSKPAKPITITTLSPSLPFKILSRFDRIRNLDVELPGGDV 121
Query: 138 GLEVSRAVKWRAEFGDTLRSCVILSFQKIRKFDGRAMMAVDNFGVDFFPGMEARVTWLMR 197
LE AVKW+AEFG TL+SCVI++F+ + ++ +F G++ RV W +
Sbjct: 122 KLEKGAAVKWKAEFGKTLKSCVIVAFRSAGTVSSPVAVEGES-DAEFVTGLKTRVVWTIS 181
Query: 198 TLITALARHHVMAEVVVEHLEMKHLVLRDGEGNGVVVIEKNGLEDFRRSRVCGDGGETSE 257
L+ A +RH++M EVV EH E++ LV+RD E G VV+ + GL++ R + E E
Sbjct: 182 ALMAASSRHYLMREVVKEHEEIESLVMRDKEREGTVVMNEEGLKELRNTEA---RVEDEE 241
Query: 258 RRTAERRTLRTRVPRTTVRMKYWPLLDLQHGFCMEDATLVVVRPTGNASEDETADMRKED 317
R +R++ VP + M++ P L L+ G C+E ATLV+VRP+G ++ E D D
Sbjct: 242 RVVKNKRSV---VPSVRMSMRHAPSLKLKSGICLESATLVIVRPSG--ADFEVGD----D 301
Query: 318 ADLALRAFEDNDVYTVAVAELLTKGTRFKMLINSF 351
A+LA AF + +Y AV LL K + + +NSF
Sbjct: 302 AELATEAFVGDCMYGEAVVALL-KCKKNALEMNSF 314
BLAST of CmaCh05G004930 vs. ExPASy Swiss-Prot
Match:
O49508 (F-box protein At4g18380 OS=Arabidopsis thaliana OX=3702 GN=At4g18380 PE=2 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 4.9e-39
Identity = 124/379 (32.72%), Postives = 193/379 (50.92%), Query Frame = 0
Query: 18 DGFDSLPDSLVLVIFNFVSDVKALIRCRAVSKRFNSLVPHSDSLFLKIDCSISSDSESD- 77
D FD+LPDS++L+IFN + DVKAL RC VSKRF+SL+P +++F+++DC IS D S
Sbjct: 23 DHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVENVFVRVDCVISDDDSSSL 82
Query: 78 ------SDSDSVPTSNLFDFFQTTLQSFFYFM------------SPVFL----------- 137
S S + P S +F LQ+ F+ SP L
Sbjct: 83 LSDKPRSASAASPFSAIFRLVFKPLQALGQFLKRSGSSSLPSGSSPSSLLISGGDDGEIE 142
Query: 138 -KSKSQKSPAQILRQFHRIQRLQIEFPTKGLEVSRAV--KWRAEFGDTLRSCVILSFQKI 197
+ SP Q+L+ F I+ L+IE P+ L + V KWRAEFG TL +CVIL +
Sbjct: 143 QGGVTHHSPTQVLKNFDEIKFLKIELPSGELGIDDGVLLKWRAEFGSTLENCVILGASSV 202
Query: 198 --------RKFDGRAMMAVDNFG---VDFFP--GMEARVTWLMRTLITALARHHVMAEVV 257
+ + AV++ G F+ G++ RV W + +LI A ARH+++ ++
Sbjct: 203 IPPTNSDKTEASSAPVAAVEDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII 262
Query: 258 VEHLEMKHLVLRDGEGNGVVVIEKNGLEDFRRSRVCGDGGETSERRTAERRTLRTRVPRT 317
EH + LVL D +G GV+ + ++ LE+ R + +A + RT VP
Sbjct: 263 AEHKTLDSLVLTDVDGQGVLCMNRDQLEELRVKPL-----------SASSASKRTLVPAL 322
Query: 318 TVRMKYWPLLDLQHGFCMEDATLVVVRPTGNASEDETADMRKEDADLALRAFEDNDVYTV 351
+R+ Y P L+L G ++ ATLV +RP ++ +KE D++ + ++ Y V
Sbjct: 323 NMRLWYAPSLELPDGTVLKGATLVAIRP---------SESKKEVCDVSWVSSAFDEPYGV 380
BLAST of CmaCh05G004930 vs. ExPASy Swiss-Prot
Match:
Q9C534 (F-box protein At1g30200 OS=Arabidopsis thaliana OX=3702 GN=At1g30200 PE=2 SV=1)
HSP 1 Score: 151.4 bits (381), Expect = 1.9e-35
Identity = 121/379 (31.93%), Postives = 187/379 (49.34%), Query Frame = 0
Query: 18 DGFDSLPDSLVLVIFNFVSDVKALIRCRAVSKRFNSLVPHSDSLFLKIDCSISSDSESDS 77
D FD LPDSL+L+IF+ V+DVK L RC VS+RF+SLVP +++ +++DC IS D S S
Sbjct: 24 DHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHSLVPFVENVLVRVDCVISDDDSSSS 83
Query: 78 DSD---SVPTSNLFD----------FFQTTLQSFF-------YFMSPVFLKSK------- 137
D + S+ T+++ D F+ F + P S
Sbjct: 84 DENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFKPFQMLGQILGPKRSSSSFDASFSA 143
Query: 138 -------SQKSPAQILRQFHRIQRLQIEFPT--KGLEVSRAVKWRAEFGDTLRSCVIL-- 197
+ SP Q+L+ F I+ L+IE PT G+E +KWRA+FG TL +C+IL
Sbjct: 144 INDEIGVTHHSPTQVLKNFGEIRFLKIELPTGELGIEDGILLKWRADFGSTLDNCMILGA 203
Query: 198 ----SFQKIRKFDGRAMMAVDNFGVDFFP--GMEARVTWLMRTLITALARHHVMAEVVVE 257
++ + N F+ G++ RV W + +LI A ARH+++ ++ E
Sbjct: 204 SSVIQSNSVKNHENSVDEDNGNIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIINE 263
Query: 258 HLEMKHLVLRDGEGNGVVVIEKNGLEDFRRSRVCGDGGETSERRTAERRTLRTRVPRTTV 317
H + LVL D +G GV+ + + LE+ R + + +A + RT VP +
Sbjct: 264 HKSLDRLVLSDADGQGVLCMNREQLEELRVTPL-----------SASSASKRTLVPALNM 323
Query: 318 RMKYWPLLDLQHGFCMEDATLVVVRPTGNASEDETADMRKE--DADLALRAFEDNDVYTV 351
R+ Y P LDL G ++ ATLV +RP ++ +KE DA AFE+
Sbjct: 324 RLWYAPELDLPDGTVLKGATLVAIRP---------SESKKEVCDASWLSDAFEEP---FG 379
BLAST of CmaCh05G004930 vs. ExPASy Swiss-Prot
Match:
Q9FNK5 (F-box protein At5g46170 OS=Arabidopsis thaliana OX=3702 GN=At5g46170 PE=2 SV=1)
HSP 1 Score: 150.2 bits (378), Expect = 4.3e-35
Identity = 120/392 (30.61%), Postives = 187/392 (47.70%), Query Frame = 0
Query: 18 DGFDSLPDSLVLVIFNFVSDVKALIRCRAVSKRFNSLVPHSDSLFLKIDCSISSDSESD- 77
D FD LPDS++L++FN + DVKAL RC VS+RF+SLVP D++ +++DC IS D S
Sbjct: 25 DHFDHLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVISDDDSSSL 84
Query: 78 ------SDSDSVPTSNLFDF----FQTTLQSFFYFMSPVFLKSK---------------- 137
S S + S +F LQ+ F+ S
Sbjct: 85 SSIKSRSGSSAGSFSAIFRLVVGGIVKPLQALGQFLGTKRSSSSCGGSGSSSSSLSISGD 144
Query: 138 -----------SQKSPAQILRQFHRIQRLQIEFPTKGLEVSRAV--KWRAEFGDTLRSCV 197
+ SP Q+L+ F I+ L+IE P+ L + V KWRAEFG TL +CV
Sbjct: 145 DDGGEIEQGGVTHHSPTQVLKNFDEIRYLRIELPSGELGIDDGVLLKWRAEFGSTLDNCV 204
Query: 198 ILSFQKI---------RKFDGRAMMAVDNFGVD--------FFP--GMEARVTWLMRTLI 257
IL + + D ++ G D F+ G++ RV W + +LI
Sbjct: 205 ILGASSVIPPNPMRVSQACDTTTVVEAPGSGSDDNGSIPESFYTNGGLKLRVVWTISSLI 264
Query: 258 TALARHHVMAEVVVEHLEMKHLVLRDGEGNGVVVIEKNGLEDFRRSRVCGDGGETSERRT 317
A ARH+++ ++ EH + LVL D +G GV+ + ++ LE+ R + +
Sbjct: 265 AASARHYLLQPIIAEHKTLDSLVLTDSDGQGVLCMNRDQLEELRVKPLAAS--------S 324
Query: 318 AERRTLRTRVPRTTVRMKYWPLLDLQHGFCMEDATLVVVRPTGNASEDETADMRKEDADL 351
A +RTL VP +R+ Y P L+L G ++ ATLV +RP ++ +KE +D+
Sbjct: 325 ASKRTL---VPALNMRLWYAPTLELPDGTVLKGATLVAIRP---------SESKKEVSDI 384
BLAST of CmaCh05G004930 vs. TAIR 10
Match:
AT1G78100.1 (F-box family protein )
HSP 1 Score: 212.2 bits (539), Expect = 6.6e-55
Identity = 144/352 (40.91%), Postives = 203/352 (57.67%), Query Frame = 0
Query: 18 DGFDSLPDSLVLVIFNFVSDVKALIRCRAVSKRFNSLVPHSDSLFLKIDCSISSDSESDS 77
D FD++PD +V+ I N V DVK LIRCR+VSKRFNSL S+SL L++D I +ESDS
Sbjct: 2 DAFDAIPDPVVIDILNRVGDVKTLIRCRSVSKRFNSLATQSESLLLQLD-QILGATESDS 61
Query: 78 DSDSVPTSNLFDFFQTTLQSFFYFMSPVFLK--------SKSQKSPAQILRQFHRIQRLQ 137
+ DS S FF++ +S + P+F K ++S K+PAQIL F RI+ L+
Sbjct: 62 EIDSPIAS----FFRSLFKSIHGLLPPIFSKPANSDEILTRSPKTPAQILSGFERIRNLE 121
Query: 138 IEF--PTKGLEVSRAVKWRAEFGDTLRSCVILSFQKIRKFDGRAMMA------VDNFGVD 197
+E LE AVKW+AEFG TL+SCVI++F+ A A V +
Sbjct: 122 VELYGGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSATVNTSAATEAAAVVDGVVESDSE 181
Query: 198 FFPGMEARVTWLMRTLITALARHHVMAEVVVEHLEMKHLVLRDGEGNGVVVIEKNGLEDF 257
F G++ RV W + L+ A RH++M ++V +H EM+ L++RD +G G VV++ G++++
Sbjct: 182 FVCGLKTRVVWTISALMAASTRHYLMRDLVKDHKEMEKLIVRDSDGEGTVVMDAAGMKEY 241
Query: 258 RRSRVCGDGGETSERRTAERRTLRTRVPRTTVRMKYWPLLDLQHGFCMEDATLVVVRPTG 317
R + V GD E +ER RT VP + M++ P L L+ G C+E ATLVVVRPTG
Sbjct: 242 RETEVRGDNKE------SERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVRPTG 301
Query: 318 NASEDETADMRKEDADLALRAFE---DNDVYTVAVAELLTKGTRFKMLINSF 351
AS+D D +L AF D+ +Y AV LL K R + +NSF
Sbjct: 302 VASDD-------NDVELVTEAFAGDGDDCMYGEAVTALL-KRRRNVLEMNSF 334
BLAST of CmaCh05G004930 vs. TAIR 10
Match:
AT1G22220.1 (F-box family protein )
HSP 1 Score: 191.4 bits (485), Expect = 1.2e-48
Identity = 128/335 (38.21%), Postives = 188/335 (56.12%), Query Frame = 0
Query: 18 DGFDSLPDSLVLVIFNFVSDVKALIRCRAVSKRFNSLVPHSDSLFLKIDCSISSDSESDS 77
D FD LPD +++ I N V DVK L+RC ++SKRFNSLVP S+SL L++D S+S
Sbjct: 2 DVFDGLPDPIIVDILNKVGDVKTLLRCSSLSKRFNSLVPQSESLTLRLDHSVS------- 61
Query: 78 DSDSVPTSNLFDFFQTTLQSFFYFMSPVFLKSKSQKSPAQILRQFHRIQRLQIEFP--TK 137
V TS F + P+ + + S P +IL +F RI+ L +E P
Sbjct: 62 -DSPVVTSIFRSLFNGLVSLLSKPAKPITITTLSPSLPFKILSRFDRIRNLDVELPGGDV 121
Query: 138 GLEVSRAVKWRAEFGDTLRSCVILSFQKIRKFDGRAMMAVDNFGVDFFPGMEARVTWLMR 197
LE AVKW+AEFG TL+SCVI++F+ + ++ +F G++ RV W +
Sbjct: 122 KLEKGAAVKWKAEFGKTLKSCVIVAFRSAGTVSSPVAVEGES-DAEFVTGLKTRVVWTIS 181
Query: 198 TLITALARHHVMAEVVVEHLEMKHLVLRDGEGNGVVVIEKNGLEDFRRSRVCGDGGETSE 257
L+ A +RH++M EVV EH E++ LV+RD E G VV+ + GL++ R + E E
Sbjct: 182 ALMAASSRHYLMREVVKEHEEIESLVMRDKEREGTVVMNEEGLKELRNTEA---RVEDEE 241
Query: 258 RRTAERRTLRTRVPRTTVRMKYWPLLDLQHGFCMEDATLVVVRPTGNASEDETADMRKED 317
R +R++ VP + M++ P L L+ G C+E ATLV+VRP+G ++ E D D
Sbjct: 242 RVVKNKRSV---VPSVRMSMRHAPSLKLKSGICLESATLVIVRPSG--ADFEVGD----D 301
Query: 318 ADLALRAFEDNDVYTVAVAELLTKGTRFKMLINSF 351
A+LA AF + +Y AV LL K + + +NSF
Sbjct: 302 AELATEAFVGDCMYGEAVVALL-KCKKNALEMNSF 314
BLAST of CmaCh05G004930 vs. TAIR 10
Match:
AT4G18380.1 (F-box family protein )
HSP 1 Score: 163.3 bits (412), Expect = 3.5e-40
Identity = 124/379 (32.72%), Postives = 193/379 (50.92%), Query Frame = 0
Query: 18 DGFDSLPDSLVLVIFNFVSDVKALIRCRAVSKRFNSLVPHSDSLFLKIDCSISSDSESD- 77
D FD+LPDS++L+IFN + DVKAL RC VSKRF+SL+P +++F+++DC IS D S
Sbjct: 23 DHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVENVFVRVDCVISDDDSSSL 82
Query: 78 ------SDSDSVPTSNLFDFFQTTLQSFFYFM------------SPVFL----------- 137
S S + P S +F LQ+ F+ SP L
Sbjct: 83 LSDKPRSASAASPFSAIFRLVFKPLQALGQFLKRSGSSSLPSGSSPSSLLISGGDDGEIE 142
Query: 138 -KSKSQKSPAQILRQFHRIQRLQIEFPTKGLEVSRAV--KWRAEFGDTLRSCVILSFQKI 197
+ SP Q+L+ F I+ L+IE P+ L + V KWRAEFG TL +CVIL +
Sbjct: 143 QGGVTHHSPTQVLKNFDEIKFLKIELPSGELGIDDGVLLKWRAEFGSTLENCVILGASSV 202
Query: 198 --------RKFDGRAMMAVDNFG---VDFFP--GMEARVTWLMRTLITALARHHVMAEVV 257
+ + AV++ G F+ G++ RV W + +LI A ARH+++ ++
Sbjct: 203 IPPTNSDKTEASSAPVAAVEDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII 262
Query: 258 VEHLEMKHLVLRDGEGNGVVVIEKNGLEDFRRSRVCGDGGETSERRTAERRTLRTRVPRT 317
EH + LVL D +G GV+ + ++ LE+ R + +A + RT VP
Sbjct: 263 AEHKTLDSLVLTDVDGQGVLCMNRDQLEELRVKPL-----------SASSASKRTLVPAL 322
Query: 318 TVRMKYWPLLDLQHGFCMEDATLVVVRPTGNASEDETADMRKEDADLALRAFEDNDVYTV 351
+R+ Y P L+L G ++ ATLV +RP ++ +KE D++ + ++ Y V
Sbjct: 323 NMRLWYAPSLELPDGTVLKGATLVAIRP---------SESKKEVCDVSWVSSAFDEPYGV 380
BLAST of CmaCh05G004930 vs. TAIR 10
Match:
AT4G18380.2 (F-box family protein )
HSP 1 Score: 163.3 bits (412), Expect = 3.5e-40
Identity = 124/379 (32.72%), Postives = 193/379 (50.92%), Query Frame = 0
Query: 18 DGFDSLPDSLVLVIFNFVSDVKALIRCRAVSKRFNSLVPHSDSLFLKIDCSISSDSESD- 77
D FD+LPDS++L+IFN + DVKAL RC VSKRF+SL+P +++F+++DC IS D S
Sbjct: 23 DHFDNLPDSILLLIFNNIGDVKALGRCSVVSKRFHSLIPQVENVFVRVDCVISDDDSSSL 82
Query: 78 ------SDSDSVPTSNLFDFFQTTLQSFFYFM------------SPVFL----------- 137
S S + P S +F LQ+ F+ SP L
Sbjct: 83 LSDKPRSASAASPFSAIFRLVFKPLQALGQFLKRSGSSSLPSGSSPSSLLISGGDDGEIE 142
Query: 138 -KSKSQKSPAQILRQFHRIQRLQIEFPTKGLEVSRAV--KWRAEFGDTLRSCVILSFQKI 197
+ SP Q+L+ F I+ L+IE P+ L + V KWRAEFG TL +CVIL +
Sbjct: 143 QGGVTHHSPTQVLKNFDEIKFLKIELPSGELGIDDGVLLKWRAEFGSTLENCVILGASSV 202
Query: 198 --------RKFDGRAMMAVDNFG---VDFFP--GMEARVTWLMRTLITALARHHVMAEVV 257
+ + AV++ G F+ G++ RV W + +LI A ARH+++ ++
Sbjct: 203 IPPTNSDKTEASSAPVAAVEDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPII 262
Query: 258 VEHLEMKHLVLRDGEGNGVVVIEKNGLEDFRRSRVCGDGGETSERRTAERRTLRTRVPRT 317
EH + LVL D +G GV+ + ++ LE+ R + +A + RT VP
Sbjct: 263 AEHKTLDSLVLTDVDGQGVLCMNRDQLEELRVKPL-----------SASSASKRTLVPAL 322
Query: 318 TVRMKYWPLLDLQHGFCMEDATLVVVRPTGNASEDETADMRKEDADLALRAFEDNDVYTV 351
+R+ Y P L+L G ++ ATLV +RP ++ +KE D++ + ++ Y V
Sbjct: 323 NMRLWYAPSLELPDGTVLKGATLVAIRP---------SESKKEVCDVSWVSSAFDEPYGV 380
BLAST of CmaCh05G004930 vs. TAIR 10
Match:
AT1G30200.2 (F-box family protein )
HSP 1 Score: 151.4 bits (381), Expect = 1.4e-36
Identity = 121/379 (31.93%), Postives = 187/379 (49.34%), Query Frame = 0
Query: 18 DGFDSLPDSLVLVIFNFVSDVKALIRCRAVSKRFNSLVPHSDSLFLKIDCSISSDSESDS 77
D FD LPDSL+L+IF+ V+DVK L RC VS+RF+SLVP +++ +++DC IS D S S
Sbjct: 24 DHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHSLVPFVENVLVRVDCVISDDDSSSS 83
Query: 78 DSD---SVPTSNLFD----------FFQTTLQSFF-------YFMSPVFLKSK------- 137
D + S+ T+++ D F+ F + P S
Sbjct: 84 DENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFKPFQMLGQILGPKRSSSSFDASFSA 143
Query: 138 -------SQKSPAQILRQFHRIQRLQIEFPT--KGLEVSRAVKWRAEFGDTLRSCVIL-- 197
+ SP Q+L+ F I+ L+IE PT G+E +KWRA+FG TL +C+IL
Sbjct: 144 INDEIGVTHHSPTQVLKNFGEIRFLKIELPTGELGIEDGILLKWRADFGSTLDNCMILGA 203
Query: 198 ----SFQKIRKFDGRAMMAVDNFGVDFFP--GMEARVTWLMRTLITALARHHVMAEVVVE 257
++ + N F+ G++ RV W + +LI A ARH+++ ++ E
Sbjct: 204 SSVIQSNSVKNHENSVDEDNGNIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIINE 263
Query: 258 HLEMKHLVLRDGEGNGVVVIEKNGLEDFRRSRVCGDGGETSERRTAERRTLRTRVPRTTV 317
H + LVL D +G GV+ + + LE+ R + + +A + RT VP +
Sbjct: 264 HKSLDRLVLSDADGQGVLCMNREQLEELRVTPL-----------SASSASKRTLVPALNM 323
Query: 318 RMKYWPLLDLQHGFCMEDATLVVVRPTGNASEDETADMRKE--DADLALRAFEDNDVYTV 351
R+ Y P LDL G ++ ATLV +RP ++ +KE DA AFE+
Sbjct: 324 RLWYAPELDLPDGTVLKGATLVAIRP---------SESKKEVCDASWLSDAFEEP---FG 379
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q9C9S2 | 9.2e-54 | 40.91 | F-box protein AUF1 OS=Arabidopsis thaliana OX=3702 GN=AUF1 PE=1 SV=1 | [more] |
| Q9LM18 | 1.7e-47 | 38.21 | F-box protein AUF2 OS=Arabidopsis thaliana OX=3702 GN=AUF2 PE=2 SV=1 | [more] |
| O49508 | 4.9e-39 | 32.72 | F-box protein At4g18380 OS=Arabidopsis thaliana OX=3702 GN=At4g18380 PE=2 SV=1 | [more] |
| Q9C534 | 1.9e-35 | 31.93 | F-box protein At1g30200 OS=Arabidopsis thaliana OX=3702 GN=At1g30200 PE=2 SV=1 | [more] |
| Q9FNK5 | 4.3e-35 | 30.61 | F-box protein At5g46170 OS=Arabidopsis thaliana OX=3702 GN=At5g46170 PE=2 SV=1 | [more] |
