CmaCh05G004520 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCAATATTAGGCCCATACTGTCTCATACGGCCCAAGAACGCAACAAACCCAATAGGCCCAAAAACAAGAACAAAAAGCGATCAAGTACAGAGAAGAAATAGGCGTCGACGAAGCAGAAGAATCCTGAAGAAAAGAGCATAAACGCCTCTAATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAGACTCCACTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGATGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATTAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTAGTAAGTTCCCCTTTTCCTTAAACCCTAATTATTTTCATCTATTGTTTCTCTGCATTTGTGGAATTCCGTTTGTGTTACATCTCATTGTTGATTGATAAATTCTTAGGTGTGCTCGGTTACCAATTTTGCTCTAACTTCATGCTTATGATAGGAGTCCTTGAAAATAGAAATAGAATTTATGCAATCTATTTGGTTGCATTGCATACAATAGTGGTTCGTTGGTTATATTCTCAATCTTCAATTTCATTCTTACAATTTCAAATGTTTTGTTAGTGCAATAAAAAGTTTCAGACTGGCTGATTTCTTATTTGATTTCAAATCAAATACATGTATCTTAAAGCAGAAGTTCGGATACAATACAGAAGTTTAAACAAAGACTGAAAATGATTTATATGCAAAACTCTGTGAAGGACCCGAAGCTAACAATTTAAAAAGTAAACTAAAATTTGGTTCATGTGGAAGTTCTGGACCAAAATTAGATTTAAACAGCTTATCATTTTCTGGTCCCGAAGTTTAAACCTTAGAACAAGATTTGGAAATTATTTTAAGATTTGGACTCTGTCATTTTAGGATTTATTTAGATTATGTTTATGTATCTATATCTCCTGCCTTGGTTGCTAATTACAAGTATTGCAATCTATGGAATTAGCTTGCTGATAGTTTCCTCCATTCCTGCCGATATGAACCTAGCTTAGTAGTTAAAGCATCTATGAAGTTTGAGGTTCAAATTCTCGCAGCTTGTCGTATAAAACAAAAATATGTTCCATCTCCTTGACTGTTCTTTGATTTCTATTTCCCCTCAATGTTCTTGTGGGCTCCTGTATCATCACTACTTGTTCTGCATCTTTTGTGAGCTTAGAATTGAGTGATTAAAGCTTTACTGCACGTCTATTACCGAGTGGCTGGCACTTATGAGAAATTGACTGGTGTAGAGGCCTACTAACTTGAAATTAGCAGCCTCGTTCAGTTCCCATGGATAGTTGTATACTTTGTCTTTCATCATTCCCTTTCCATTTCACTGGACGTTTTTGTATGATTGAAATGTGATGCATTGCAATAGTGATCTTGCAAATGGGTCTGAGTGAGTGATTTTCCCCCTCTTCTTGTCCTAATTGTTACTAAACAAACGCCTTCCTTTAAATTATAGTTTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCTGAGAATCGCGCAACTATGCAGGCTGCTGAGGAGCTGCACAGAAAGAAAGTAGCCCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAAAGAGACAAACTTTAGTGAGATTTGAACTTGCTTCAATGCAAGTGAAAGAGAGAGATAGAGAGGCAGAACATGGAAAAACCTGCCGTGCTCTGAGCTTGCTATTGCTATTCACAATGCTGATGCATGTTAAGCTTCCGCATTGTTTTGTTTCTGTAGTTAATTCTATTCACAAAGCATAGTTTGAAAAGCTGAAAAACGCTTACCTTCGTTGAAAACTTGTAATTTTATTGAAAGAAGAGCTAGAAATCAGGAGTTTTTAATGCGCAGCATTGTTGTTTTAATTCCCCAATTGGTTTCTTTTAGGGTTGATCCTGGAAGACTCTTCTTTCTTTCAAGATTGAAGAGTTAAGTTTGTCT CCCAATATTAGGCCCATACTGTCTCATACGGCCCAAGAACGCAACAAACCCAATAGGCCCAAAAACAAGAACAAAAAGCGATCAAGTACAGAGAAGAAATAGGCGTCGACGAAGCAGAAGAATCCTGAAGAAAAGAGCATAAACGCCTCTAATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAGACTCCACTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGATGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATTAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTATTTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCTGAGAATCGCGCAACTATGCAGGCTGCTGAGGAGCTGCACAGAAAGAAAGTAGCCCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAAAGAGACAAACTTTAGTGAGATTTGAACTTGCTTCAATGCAAGTGAAAGAGAGAGATAGAGAGGCAGAACATGGAAAAACCTGCCGTGCTCTGAGCTTGCTATTGCTATTCACAATGCTGATGCATGTTAAGCTTCCGCATTGTTTTGTTTCTGTAGTTAATTCTATTCACAAAGCATAGTTTGAAAAGCTGAAAAACGCTTACCTTCGTTGAAAACTTGTAATTTTATTGAAAGAAGAGCTAGAAATCAGGAGTTTTTAATGCGCAGCATTGTTGTTTTAATTCCCCAATTGGTTTCTTTTAGGGTTGATCCTGGAAGACTCTTCTTTCTTTCAAGATTGAAGAGTTAAGTTTGTCT ATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAGACTCCACTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGATGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATTAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTATTTGGGCGGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCTGAGAATCGCGCAACTATGCAGGCTGCTGAGGAGCTGCACAGAAAGAAAGTAGCCCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAA MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS Homology
BLAST of CmaCh05G004520 vs. ExPASy Swiss-Prot
Match: A4FV72 (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus OX=9913 GN=PPIE PE=2 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 5.6e-28 Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 0
BLAST of CmaCh05G004520 vs. ExPASy Swiss-Prot
Match: Q9QZH3 (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus OX=10090 GN=Ppie PE=1 SV=2) HSP 1 Score: 125.6 bits (314), Expect = 5.6e-28 Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 0
BLAST of CmaCh05G004520 vs. ExPASy Swiss-Prot
Match: Q5R723 (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii OX=9601 GN=PPIE PE=2 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 8.0e-27 Identity = 67/139 (48.20%), Postives = 91/139 (65.47%), Query Frame = 0
BLAST of CmaCh05G004520 vs. ExPASy Swiss-Prot
Match: Q9UNP9 (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens OX=9606 GN=PPIE PE=1 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 3.0e-26 Identity = 68/139 (48.92%), Postives = 91/139 (65.47%), Query Frame = 0
BLAST of CmaCh05G004520 vs. ExPASy Swiss-Prot
Match: Q9V3G3 (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster OX=7227 GN=cyp33 PE=1 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 5.4e-23 Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = 0
BLAST of CmaCh05G004520 vs. TAIR 10
Match: AT1G13690.1 (ATPase E1 ) HSP 1 Score: 282.7 bits (722), Expect = 1.9e-76 Identity = 138/165 (83.64%), Postives = 158/165 (95.76%), Query Frame = 0
BLAST of CmaCh05G004520 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 ) HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15 Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 0
BLAST of CmaCh05G004520 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 76.6 bits (187), Expect = 2.1e-14 Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 0
BLAST of CmaCh05G004520 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 ) HSP 1 Score: 68.9 bits (167), Expect = 4.4e-12 Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 0
BLAST of CmaCh05G004520 vs. TAIR 10
Match: AT4G39260.3 (cold, circadian rhythm, and RNA binding 1 ) HSP 1 Score: 68.6 bits (166), Expect = 5.7e-12 Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|