CmaCh05G004240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G004240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein of unknown function (DUF3511)
Location	Cma_Chr05: 1912710 .. 1915838 (+)
RNA-Seq Expression	CmaCh05G004240
Synteny	CmaCh05G004240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACAGTTATATTAGTCTCGTTTGCGAGTGAAATACTTCTGATTCGAAGAGTTGACTTTGAAGTTAACCTCCCCGGTTACAAGATTTAGACGTTTCATACCCATTTCGTAAATGTTTATAGATTATAAAATAGTTTTGGTCTATCTATTTTAACTAGGTTTTTAGATCAATAATGACTTAGTTCGAGAGGTTAATATATAAAACGATATATTTCTTATAGTTTAAATTTGTAGCTTCTTTAGCTTCTATCATGAATATAGTCACTCAATTGTTAGCTTCTATCATGAATATAGTCATTGAATCGATAGCTTCCATCGTGAATATAGTCACTAAATCGTTAGCTTCTATCATGAATATAGTCACTGAATCGTTAGCTTCACTGAATCGTTACGGACTTTAAACTTCGTTGACTAAATTGTTACAAATTTAAACCTAAGAACACACCTCGTGTGTATGCAATAAAAGAATACATTTGGGAGAGCATAAATTCCAAAAGTCAGTTTCTTCCACCCAAGAAAACATTATAAAATTGAAGTTTCCCCAAAAGCCAACCCATCTTCCTCCTTATTGCTCCCACGTTTTCAGAACTCCCAATCTCTTCTTCTTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATGGATGATGACAGAAGAGGTTCTTACGGAAGCTCGTCGATGCAGATTGAGAGCTATTACGGGCCACCGAAGAGCCAGATTCCTGGGAAACAAGACAAAAGAAGTTCTGGATCTTCTTCAAAATCATTCAAATTTTCAGATCCTGAGTTTCAAAGGAAGAAAAGGGTTGCCAGTTACAAGATGTACTCTGTTGAAGGCAAGATGAAAGGCTCCTTCAGAAAGAGCTTCAGATGGCTCAAGGATAAGTACACCCAAATGCTTTATGGCTGGTGGTGAGTTTCTTATGGAAGATCCAACAAATTCTGTATCTGGGATGATTTCCATTCGATTAAATAGTCTTCTTTTTGTGATTTTTTCTGGGAAATTTCTGTTCATGTTCTTCATTGTTCATCATTGTTCATCATCTGATCTGTTTGTTTTGGTTGGATACTCTTTTGGGAGTTATGAATGTTGAAATGTTGAAATGTAAACAAGTGAATCAGTCAAACTTTGCAAATAAAAGCTATCTTTTTTCTCTTTTCATTTCGTTTCATTCTTTGAATCAGTCAATAGTGTTTGATATCAAATCATATGGAGATGATAGTATTATTTTGTTCTATGCCCACTGTTCTTCTCAGCCACTCATTTTGTTAAATGAATATGAACAAAATTATAGCAAAAAATCATGATTGATCAAGAAAAGGAAACATAGTTTTCAAAAATCTATTGGAATTGTAAATGAACTTAAGGTTGGTTTGATAACTCATTTACTGGTTTTGCTTTGTTGGGGTCTTTCTTATGCTCGACTTACAATATTGACCCTTCTCCGGTTCATCAACTTTCACTTCATTATGTGCTTCTAGACATGTCGAGCTCTACATATTCTTGTACACGCTCGAATTATTACAAGGATTACTTTAGAATTCGAGAGAGCTATTGGGCTTGAGACCATAACCATGTAGTTAGGTAGGGACAATCAATCCACCAAAGAAGACAAAATCTGTGCTAATCCTCAGCCCGAAATAAGTACCTCACCTCACTTACAATGAAGCAGTTGGTACCATCGTTCACTATTCTTGATGATAACTCAGAAAACTAGCGCTCAGAAACATAGGGGACGTTAGTTTTCTATTAAATTTTGAAAACTAGAGTTAGTTCACTTTCATTGTTCACCTGTTCACCTCACTTAAATATTGATTTTGATTTTAAATATGTTTTTAACTAGAGTTGTTTGTTCATATCCTTAAATATTTGGGTTGAATTAGTTCCGGTTGTTGGAATTATCTATTTATTTTCTACCATTGATTCAAGATTTACAACTCAGCTTCAACATATTTCATGTCATCGTCGTGTTCATGGTCGTGTTCATGGTCGTGTTCATGTCCTAAATTTTATTTTAAAAATGACGGGTCATTGACCATACTGTGTTGTAACCGCTTCTTAACTCTCCACATAGAATTTACAAGTAACGAACTACTTATTTTAACTTTAGAAAAAGAAATACATATAATTTTGGTGGATCAAATTGGTTGGGCAGAAAAGAAGCAAAAACTTTGTTTCTCTCCCATTTTCCCCTGTATTTTCGCCTTCTTTTATTGTGAAAACAGACCAAAAAAACAGAGCCAAAAACGCCAAAAAAAACTCATCCAATCTCTTCTTCTTCATCATCCTCCTTTCAATTCCTCATTTCCTTGCAGAAACTAATCAATTTCTGCCATTGTTTTTCGATTTTCCAGCTCGAAGTAGACAAAAAACAAGACAAAATAAAAAAACAGAGCATCCCAAAATGAACAGATGAAAACAGAGCTCCTCTGTTGGGTTTCATTTTCCTCTGTTTTTTTTAATGTTTTAGTCATGGTGAGAAGCTTTCCGACGGATGAGAACCCGCTAATTCATCCGGCGATTTCCCTCTCCCTTCTAGCGGCTGGGATGGCAGCCGCCATCGCTATGATCACCACGTTATGCGGTGACCGATCCCGGAAAACACCCACAGCCTCTGAAGCTTCATCTCCAACCGCCGCAGACAACAAACCAGGCGAGAACGCTTCCCCGACGGTGAACCCATCCGGCGGAGAAACAGGAAACGACGGCGACGAACAGGGTGTGAAAGAACTTCCCCTACCTCCGAAAATGCAACAGCTCGGGAGTGCGAGCCCGCCGACGCAAATTTCTAAATCGGCTTCGGAAAGGAAATTAACCCATATGAAAAGTATGAGCGTTAATGTTCCGAGAAGCCTGTCGGTGGCGAGGCACAATTTAGACGATGGGCGGCATAAGAAAAAGGATAAGATTAAAGGGGAAGATTCGATTTGGACGAAGACCATAATTTTAGGGGAGAAATGCAAAGTTACAGATGAAGAAGATGGGATTATTTATGAAGGAAAAGGGAAGAAGATATCGGCGTATCACCCGAGAGCTCCGAGTTCGATGTCGGCGTCGATTTCCAGGCAAGGATCCGCCATTGATGCGGAAACTCTGCCCAGCCCAGAAGATAAGTAG

mRNA sequence

ATGTCTACAGTTATATTAGTCTCGTTTGCGAGTGAAATACTTCTGATTCGAAGAGTTGACTTTGAAGTTAACCTCCCCGAACTCCCAATCTCTTCTTCTTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATGGATGATGACAGAAGAGGTTCTTACGGAAGCTCGTCGATGCAGATTGAGAGCTATTACGGGCCACCGAAGAGCCAGATTCCTGGGAAACAAGACAAAAGAAGTTCTGGATCTTCTTCAAAATCATTCAAATTTTCAGATCCTGAGTTTCAAAGGAAGAAAAGGGTTGCCAGTTACAAGATGTACTCTGTTGAAGGCAAGATGAAAGGCTCCTTCAGAAAGAGCTTCAGATGGCTCAAGGATAAGTACACCCAAATGCTTTATGGCTGGTGCTTTCCGACGGATGAGAACCCGCTAATTCATCCGGCGATTTCCCTCTCCCTTCTAGCGGCTGGGATGGCAGCCGCCATCGCTATGATCACCACGTTATGCGGTGACCGATCCCGGAAAACACCCACAGCCTCTGAAGCTTCATCTCCAACCGCCGCAGACAACAAACCAGGCGAGAACGCTTCCCCGACGGTGAACCCATCCGGCGGAGAAACAGGAAACGACGGCGACGAACAGGGTGTGAAAGAACTTCCCCTACCTCCGAAAATGCAACAGCTCGGGAGTGCGAGCCCGCCGACGCAAATTTCTAAATCGGCTTCGGAAAGGAAATTAACCCATATGAAAAGTATGAGCGTTAATGTTCCGAGAAGCCTGTCGGTGGCGAGGCACAATTTAGACGATGGGCGGCATAAGAAAAAGGATAAGATTAAAGGGGAAGATTCGATTTGGACGAAGACCATAATTTTAGGGGAGAAATGCAAAGTTACAGATGAAGAAGATGGGATTATTTATGAAGGAAAAGGGAAGAAGATATCGGCGTATCACCCGAGAGCTCCGAGTTCGATGTCGGCGTCGATTTCCAGGCAAGGATCCGCCATTGATGCGGAAACTCTGCCCAGCCCAGAAGATAAGTAG

Coding sequence (CDS)

ATGTCTACAGTTATATTAGTCTCGTTTGCGAGTGAAATACTTCTGATTCGAAGAGTTGACTTTGAAGTTAACCTCCCCGAACTCCCAATCTCTTCTTCTTCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATGGATGATGACAGAAGAGGTTCTTACGGAAGCTCGTCGATGCAGATTGAGAGCTATTACGGGCCACCGAAGAGCCAGATTCCTGGGAAACAAGACAAAAGAAGTTCTGGATCTTCTTCAAAATCATTCAAATTTTCAGATCCTGAGTTTCAAAGGAAGAAAAGGGTTGCCAGTTACAAGATGTACTCTGTTGAAGGCAAGATGAAAGGCTCCTTCAGAAAGAGCTTCAGATGGCTCAAGGATAAGTACACCCAAATGCTTTATGGCTGGTGCTTTCCGACGGATGAGAACCCGCTAATTCATCCGGCGATTTCCCTCTCCCTTCTAGCGGCTGGGATGGCAGCCGCCATCGCTATGATCACCACGTTATGCGGTGACCGATCCCGGAAAACACCCACAGCCTCTGAAGCTTCATCTCCAACCGCCGCAGACAACAAACCAGGCGAGAACGCTTCCCCGACGGTGAACCCATCCGGCGGAGAAACAGGAAACGACGGCGACGAACAGGGTGTGAAAGAACTTCCCCTACCTCCGAAAATGCAACAGCTCGGGAGTGCGAGCCCGCCGACGCAAATTTCTAAATCGGCTTCGGAAAGGAAATTAACCCATATGAAAAGTATGAGCGTTAATGTTCCGAGAAGCCTGTCGGTGGCGAGGCACAATTTAGACGATGGGCGGCATAAGAAAAAGGATAAGATTAAAGGGGAAGATTCGATTTGGACGAAGACCATAATTTTAGGGGAGAAATGCAAAGTTACAGATGAAGAAGATGGGATTATTTATGAAGGAAAAGGGAAGAAGATATCGGCGTATCACCCGAGAGCTCCGAGTTCGATGTCGGCGTCGATTTCCAGGCAAGGATCCGCCATTGATGCGGAAACTCTGCCCAGCCCAGAAGATAAGTAG

Protein sequence

MSTVILVSFASEILLIRRVDFEVNLPELPISSSSSSSSSSSSSSSSSMDDDRRGSYGSSSMQIESYYGPPKSQIPGKQDKRSSGSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGWCFPTDENPLIHPAISLSLLAAGMAAAIAMITTLCGDRSRKTPTASEASSPTAADNKPGENASPTVNPSGGETGNDGDEQGVKELPLPPKMQQLGSASPPTQISKSASERKLTHMKSMSVNVPRSLSVARHNLDDGRHKKKDKIKGEDSIWTKTIILGEKCKVTDEEDGIIYEGKGKKISAYHPRAPSSMSASISRQGSAIDAETLPSPEDK

Homology

[Close]

BLAST of CmaCh05G004240 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 86.3 bits (212), Expect = 5.4e-17
Identity = 50/102 (49.02%), Postives = 60/102 (58.82%), Query Frame = 0


Query: 49  DDDRRGSYGSSSMQIESYYGPPKSQIPGKQ-------------DKRSSGSSSKSFKFSDP 108
           D  R+  YG   MQI+ Y+G                        K  S + SKS+  +DP
Sbjct: 3   DFGRQRPYGDGGMQIQPYHGNQGGDFRSYSASYGTRENNIYDVKKEKSIARSKSWGITDP 62

Query: 109 EFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYGW 138
           E QRKKRVASYKMY VEGK+KGSFR SFRWLK +YTQ++YGW
Sbjct: 63  ELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGW 104

[Close]

BLAST of CmaCh05G004240 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-09
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 32  SSSSSSSSSSSSSSSSMDDDRRGSYGSSSMQ-IESY---YGPPKSQIPGKQD-KRSSGSS 91
           S     +S     S+    D   S+  + MQ + SY   Y    ++IP  Q+ K+   SS
Sbjct: 8   SYGDGRTSDLQQYSAHRRSDGPDSFSGNGMQDLRSYSTSYTDYPTRIPEDQNPKKGRSSS 67

Query: 92  SKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQML 135
           S S+ F DP+ QRKKRV SY+ Y+VEGK+KGSFRKSF+W+KDK  ++L
Sbjct: 68  SSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLL 115

[Close]

BLAST of CmaCh05G004240 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-08
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 78  QDKRSSGSSSKSFK-FSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYG 137
           + KRS+    K FK   + E QRKKRVASY +Y VEG++KGS +KSF+W K+  +  +YG
Sbjct: 66  KSKRSNKVKKKGFKGLCEAEIQRKKRVASYNVYGVEGRVKGSMKKSFKWFKETCSNAVYG 125

[Close]

BLAST of CmaCh05G004240 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 57.8 bits (138), Expect = 2.1e-08
Identity = 29/58 (50.00%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 81  RSSGSSSKSFK--FSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQMLYG 137
           R S S S  FK  ++DPE +RK+RVA YK+YS EGKMK + RKS++W+K + +++++G
Sbjct: 66  RRSSSHSTLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

[Close]

BLAST of CmaCh05G004240 vs. TAIR 10
Match: AT3G62640.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-07
Identity = 24/62 (38.71%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 75  PGKQDKRSSGSSSKSFKFSDPEFQRKKRVASYKMYSVEGKMKGSFRKSFRWLKDKYTQML 134
           PG   K  + +++  ++  D E +RKKR+A+YK Y++EGK+K + +K F W+KD+Y+ ++
Sbjct: 51  PGSTSK--TRTTATPWRLIDAETKRKKRIATYKTYALEGKVKSTVKKGFHWIKDRYSHII 110

Query: 135 YG 137
           +G
Sbjct: 111 HG 110

The following BLAST results are available for this feature:

BLAST of CmaCh05G004240 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G004240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11970.1	5.4e-17	49.02	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	1.1e-09	43.52	Protein of unknown function (DUF3511)	[more]
AT1G72720.1	1.2e-08	50.00	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	2.1e-08	50.00	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	3.0e-07	38.71	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 92..136 e-value: 2.8E-24 score: 84.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 317..348
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 322..338
None	No IPR available	PANTHER	PTHR36801:SF3	OS06G0150200 PROTEIN	coord: 139..347
None	No IPR available	PANTHER	PTHR36801	OS06G0150200 PROTEIN	coord: 139..347

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G004240.1	CmaCh05G004240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity