CmaCh05G003990 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G003990
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUPF0481 protein At3g47200-like
LocationCma_Chr05: 1737415 .. 1737751 (+)
RNA-Seq ExpressionCmaCh05G003990
SyntenyCmaCh05G003990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATAAGCTTCACAATTGGAGTTCTTGAAATTCCACCTTTGTATAGAGATGATTACTTTAAAACCATGATGCGAAATATGTATCCAATACGTGTCATTATTGGATTATTTGATATGCACAGAGAAAGACGTGAATTTCCTTGTGAGAGTCGGGATCATAATCAATGATATTGGAGGGAATGATAAAGAAGTTTCAGAATTGTTCAACAATCTCTGTAAATTTGTCATAGTCTCAGATTATTACCACTTCAACGATATCAACAAAGCTTTACGTAGATATTGCAATAGACTATGGAATAAGGCAAAAGCTTCACTCAAGCATAATTATTTGTAA

mRNA sequence

ATGGATATAAGCTTCACAATTGGAGTTCTTGAAATTCCACCTTTGTATAGAGATGATTACTTTAAAACCATGATGCGAAATATGTATCCAATACAGAAAGACGTGAATTTCCTTGTGAGAGTCGGGATCATAATCAATGATATTGGAGGGAATGATAAAGAAGTTTCAGAATTGTTCAACAATCTCTGTAAATTTGTCATAGTCTCAGATTATTACCACTTCAACGATATCAACAAAGCTTTACGTAGATATTGCAATAGACTATGGAATAAGGCAAAAGCTTCACTCAAGCATAATTATTTGTAA

Coding sequence (CDS)

ATGGATATAAGCTTCACAATTGGAGTTCTTGAAATTCCACCTTTGTATAGAGATGATTACTTTAAAACCATGATGCGAAATATGTATCCAATACAGAAAGACGTGAATTTCCTTGTGAGAGTCGGGATCATAATCAATGATATTGGAGGGAATGATAAAGAAGTTTCAGAATTGTTCAACAATCTCTGTAAATTTGTCATAGTCTCAGATTATTACCACTTCAACGATATCAACAAAGCTTTACGTAGATATTGCAATAGACTATGGAATAAGGCAAAAGCTTCACTCAAGCATAATTATTTGTAA

Protein sequence

MDISFTIGVLEIPPLYRDDYFKTMMRNMYPIQKDVNFLVRVGIIINDIGGNDKEVSELFNNLCKFVIVSDYYHFNDINKALRRYCNRLWNKAKASLKHNYL
Homology
BLAST of CmaCh05G003990 vs. TAIR 10
Match: AT4G31980.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 5.8e-12
Identity = 39/123 (31.71%), Postives = 66/123 (53.66%), Query Frame = 0

Query: 1   MDISFTIGVLEIPPLYRDDYFKTMMRNMYPIQK-----------------------DVNF 60
           +DISF  GVL+IP +  DD  +++ +N+   ++                       D + 
Sbjct: 528 LDISFADGVLKIPTIVVDDLTESLYKNIIGFEQCRCSNKNFLDYIMLLGCFIKSPTDADL 587

Query: 61  LVRVGIIINDIGGNDKEVSELFNNLCKFVIVSDYYHFNDINKALRRYCNRLWNKAKASLK 101
           L+  GII+N + GN  +VS LFN++ K VI    ++F+ +++ L+ YCN  WN+ KA L+
Sbjct: 588 LIHSGIIVNYL-GNSVDVSNLFNSISKEVIYDRRFYFSMLSENLQAYCNTPWNRWKAILR 647

BLAST of CmaCh05G003990 vs. TAIR 10
Match: AT3G50170.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-08
Identity = 40/124 (32.26%), Postives = 59/124 (47.58%), Query Frame = 0

Query: 2   DISFTIGVLEIPPLYRDDYFKTMMRNMYPIQ------------------------KDVNF 61
           DI F  G LEIP L   D  K++  N+   +                        +DV++
Sbjct: 381 DIEFKNGYLEIPKLLIHDGTKSLFSNLIAFEQCHIESSNHITSYIIFMDNLINSSEDVSY 440

Query: 62  LVRVGIIINDIGGNDKEVSELFNNLCKFVIVSDY-YHFNDINKALRRYCNRLWNKAKASL 101
           L   GII + + G+D EV++LFN LC+ V+      H + ++  + RY NR WN  KA+L
Sbjct: 441 LHYCGIIEHWL-GSDSEVADLFNRLCQEVVFDPKDSHLSRLSGDVNRYYNRKWNVLKATL 500

BLAST of CmaCh05G003990 vs. TAIR 10
Match: AT5G11290.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 37/123 (30.08%), Postives = 60/123 (48.78%), Query Frame = 0

Query: 1   MDISFTIGVLEIPPLYRDDYFKTMMRNMYPIQK-----------------------DVNF 60
           +DISF  GVL IP +  +D  +++ RN+   ++                       D   
Sbjct: 202 LDISFANGVLTIPKIKINDITESLYRNIILFEQCHRLDAYFIHYMRFLSCFIRSPMDAEL 261

Query: 61  LVRVGIIINDIGGNDKEVSELFNNLCKFVIVSDYYHFNDINKALRRYCNRLWNKAKASLK 101
            +  GII+N   GN ++VS LFN++ K    S +Y +  +   L+ +CN  WNK KA+L+
Sbjct: 262 FIDHGIIVNRF-GNAEDVSRLFNSILKETSYSGFY-YKTVYGNLQAHCNAPWNKWKATLR 321

BLAST of CmaCh05G003990 vs. TAIR 10
Match: AT3G50140.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-08
Identity = 39/124 (31.45%), Postives = 59/124 (47.58%), Query Frame = 0

Query: 2   DISFTIGVLEIPPLYRDDYFKTM------------------------MRNMYPIQKDVNF 61
           DI F  G LEIP L   D  K++                        M N+    +D+ +
Sbjct: 381 DIQFKNGCLEIPKLLIHDGTKSLFSNLIAYEQCHIDSTNDITSYIIFMDNLIDSAEDIRY 440

Query: 62  LVRVGIIINDIGGNDKEVSELFNNLCKFVIVS-DYYHFNDINKALRRYCNRLWNKAKASL 101
           L    II + + GND EV+++FN LC+ V    +  + ++++  + RY NR WN  KA+L
Sbjct: 441 LHYYDIIEHWL-GNDSEVADVFNRLCQEVAFDLENTYLSELSNKVDRYYNRKWNVLKATL 500

BLAST of CmaCh05G003990 vs. TAIR 10
Match: AT3G50150.1 (Plant protein of unknown function (DUF247) )

HSP 1 Score: 54.7 bits (130), Expect = 5.1e-08
Identity = 40/125 (32.00%), Postives = 61/125 (48.80%), Query Frame = 0

Query: 2   DISFTIGVLEIPPLYRDDYFKTMMRNMYPIQ------------------------KDVNF 61
           DI F  G L+IP L   D  K++  N+   +                        +DV++
Sbjct: 351 DIEFKNGYLKIPKLLIHDGTKSLFSNLIAFEQCHTQSSNNITSYIIFMDNLINSSQDVSY 410

Query: 62  LVRVGIIINDIGGNDKEVSELFNNLCKFVIV--SDYYHFNDINKALRRYCNRLWNKAKAS 101
           L   GII + + G+D EV++LFN LCK VI    D Y  + +++ + RY +R WN  KA+
Sbjct: 411 LHHDGIIEHWL-GSDSEVADLFNRLCKEVIFDPKDGY-LSQLSREVNRYYSRKWNSLKAT 470

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT4G31980.15.8e-1231.71unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247,... [more]
AT3G50170.11.0e-0832.26Plant protein of unknown function (DUF247) [more]
AT5G11290.11.7e-0830.08Plant protein of unknown function (DUF247) [more]
AT3G50140.13.0e-0831.45Plant protein of unknown function (DUF247) [more]
AT3G50150.15.1e-0832.00Plant protein of unknown function (DUF247) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004158Protein of unknown function DUF247, plantPFAMPF03140DUF247coord: 32..101
e-value: 2.2E-14
score: 53.6
NoneNo IPR availablePANTHERPTHR31170BNAC04G53230D PROTEINcoord: 23..100
NoneNo IPR availablePANTHERPTHR31170:SF13BNAC04G53230D PROTEINcoord: 23..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G003990.1CmaCh05G003990.1mRNA