CmaCh05G003410 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G003410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pentatricopeptide repeat superfamily protein
Location	Cma_Chr05: 1491372 .. 1498040 (-)
RNA-Seq Expression	CmaCh05G003410
Synteny	CmaCh05G003410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTCGCGCGAGGAGGCAATGGCGAACGACGAAGAGAGAGTTCTGGAGCACCAGCTAGAGGTTCAATTGCATGAGCAGAGAGAATCTCTCGCCGCCTTGCAAGATGCCTTAGCCTCCGATGCCTCCAATCCGGAGCTTCTCGAGGTACGTTCTTTTGTCCAATATGAATTTCCGTTTGGCTTTGAGAATATTCATGAGAGGAATGCGTGATCGCCTCTTATTGAATTTGATTATTATTTTTGAAGTTTTGAAGACCTCTGCTTGTTGATTTATTTGAATATAATCTGTTGATGTCAAGGTTCATGATGAGCTTGTCCAAGCAATTAAAGATGCCGAGGAAGGGCTGCTTCACCTTAAGCGTTCTAGATTACTAAGAGAAGCAGATTTGGTGTTGTGTGGTCGTGATAGTAACGCAGCGGAGGATGTTAAGGTGGAGCCTCTTCATTCTACGGACGTCGAACCTGAATCACCAGAGGATCAGAGTTTCGTCGTTGGATCGAAATGCAGATTTCGGCACACTGATGGACGTTGGTATGACGGTGAAATTGTTGGATTGGATGGTTCTAATTCTGCGAAAATTTCTTTCCTCACTCCTACAACTGAAAATATGTTGGTAAGCAATCTGGGACTCTATTCGTCGGCTTTTGCGAAACTGTTAGTTCTAATTTCAAACCACTCCTCATTTTGTCTTTTGGATTGTATTTATGCACATATTATTTTGACTTGAATTTACCGTTTTCTGTCTGATTGTGGCTGTCTCGGTCTTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGGAATTCGATTAGCTTCTTCCCTTTAATAGTACCGAGGATCTGTTTGTGCCTACTTACTAGATGAGTTTTTAAGTGTTGGCAGTGACTTGGGTTTTGATTCACCTAACTAAACTATTGAGCAATCACTATGGTTTTTTCTCACATCATGATACTAATGCCATAACACCACCAAAGTGCAGATATGCAAGTTCTTCTTACAGCAAAGGTGTCGGTTTGGCACTAGCTGCCGCTTATCGCATGGTATGTCATATTCTTTCACGTGGACCATGTAGATCCAACTACTCATTAAGTAAAGCCTTCCCCTCGTTTCAATGGCTGTTCCCACCAGCAATACTATCTTGAGATGCTAGAATGGATTATAAACTCTTTAATAAAGGAACCTGCAGAATTAAAATAATGGTGAAGTTCCTGCATAGGTCTAGGACTAAAAATGTTTTCCTTCATAAAGAGTTCAGTATGAAAAAAATGCTGGTGCTGTTCGGTTTTCTTGTTGATGAATCTTCAATCATTTGTATTCCTAATTAGAAGAATGTGAGTAAAACTTAGATCTTCTACAACTCGTTACTTCTTATTCCCCGTTGAGACTAGAAACAGTTTTGTTTCTATTTAAAGAAGAATGCAAGAGGTAATGGGGGACTAGTTTACCAATCCTAGAACTAAAGAAAATGGAGATTACACTGAAGAAAAACTGTCAAGGAACTGTGAATTAAGCTATTTCACCTAAGAGGAGAGCAAAGAGAAACTGTCTTGAATTTCTCTTTCTAATATCTTGGAAAATTCAATTGCCACATTTCATGCATTGGGCAGATGTTTGTGAATATCGCATTTCTAGAACTCCCCTTCATTTCAGCTGTCTCTATGTGATACATTCTAAGACTGCCTTATGTAATGCAAGGTAGTCTTGCCTTTCAACATTTTTGGAAAATACATGTTGCATTGCATTTTACCTCCATTCCAATAGTACCACATGTATTTCTTTCCCCTTGATTTAATGTTTCCATTTTATTTAAAATGAACTTTCCCTAGTTTTTTATTCACCTTTTTAGAGACTGGTCTTTTTCCTTCCATGTAAAAGAACAGGCAATAGCTAAGCTGCTGTTCTCAACTATATTTGTATACTTCTGTATATCATTAAAGTCAATAGCTTTGCTGCTATTCTCCATTGGGTTTGTCGACCAATTGGGAGTTTTGAGGAGGAAAGAATTTTTACATTTATTTCTTTGATTAGGTTTTTGTCCTTCTGTATAAAGTATATCTTAACAGGCAATAGCTATGCTTTTATTCTCAATTATCTGAGAGAGTTTTTCATGCACAGGAGTTGATATCCCTTTAACCTCTCTTAGGAGATATGCGCCAACAATTTGGAATCAGTCACTGACAGGGTCCAGTATCTGGGCTCTCTCGTCCAGGAATGGCATTTGGAGGCATGCTGAACTTGAATCTTGGGATGATGCACTACAAATTGCACAAGTTGTTTTTAAAGGTGATGGATCCTCTCAAAAGCTTGGACCGGAGGACATAGCGTTATCTGTGCGTGCTCAAATTAGTGATGGAGAAGAAAGTGATTCCAGCTTGGAAAAGTCTGACTCAAGTGATTATGAAGATGATGATTTGCAGGGTTTGGGATTCCTCGAAAGCTCTACACAGCAGAGGGGCATTCAGATGGAAACCACCATATTTGCAAAATGGGAGAACCATACCCGGGGAATCGCCTCCAAGATGATGGCTAATATGGGCTATCGAGAAGGAATGGGTTTGGGTGCATCTGGGCAGGGGATGCTAAATCCTATCCCTGTCAAAGTTCTTCCAGCAAAACAATCTCTTGATCATGCTCTAGAATCACAAAAGGAGAATAATACTAACGACGAGAATAATGGCAAGAAACGAAGTAGAGGCGGTAAGAGGAAACGTGATAAGAAGTTTGCTGCAGCAATGCAGGCAGCTAAAGAGGAAGAAGACTCAAGACCTGATGTCTTTAATCTTATCAACAACCACCTTGCAATGCATAATGGAGCACCGAATGATGGATCTGTTAAGAAACAGAAAGATAAAGGTTCAGCAGATGGAAAGAAGGTAGATAGACGAACTCTAATCGCGTACGATGGTGAGGTGAAAGACCTGCGAGTACGAATAGAGAAGCTTGAAGAAATGGTGAACAGAAATAAGAATGAGAAGGTTGTTTTCGAGGCTGCCTTAAGAAAGCTGAACGAGACTCGGAAAGCTTTGGCCGAGGCCGAGGCAGCTCATGCGTCTGCATCAAATGCAGTTACCAGCAGAGAAAAGGAAAAAAAATGGTTGAAGTTTTAGGGCTTGACTTGATGTTATTGTATAATGATAGCTCCACCTGTAGAAGATTCATGTCAATCTCTGAAACTGAACCCCACGTGAATTATTGAAGGAAATCGTGTGATGATTTGTGTTTCATGGTGGCTGGCCGTTGGTGTATATTCATCCTAATATGAAGTCCAAATCTTAATGTAGGCGACAGGCTGATTCTTGTTCCTTTTTCTCAATTAGTACTTCTTATAGTTCGGTCGTTTTTGTTTCTTTTGTGATTTGCATACTTTTCCCTAATAATGTATAAATTACTTTTTGGGATAGGATGAGCATTCTAGATGGAATTGGTTAAATATGTCATTTCCTACTCGTGCAAATTAGAATTTCATTCAATTTTATCGGTTTGATCCTGTTTGAAAATTTTTGCCTTTTTCACAATCGCACTTTTCTTACCACGAACTCTGCGATTGTGTGGCACTCGCTGTTTTTCAATAGCAAGTGAGTCAAGTCGATTTGTATTTGCGTTGCAATGCTCAAGTCTCTGACTCCTATTTGAAAAGAAGGTTTAGAAAACAGGGGCAGAGAAAGATTGAGTGAGAGAATTTGAAAACAAGGTTATATGACATACAAGCAAAAGGTAATACAACGGCTTAAGTAAAATTCATCCAATTCTTCACGTTCAAACAATTTAATTTTTTCTTCTCGCGTATTCCATTGGGTATAACTCCTCATCTTCATCCAATTAAAATTCTGAAATGTTTAAAAAATATTTTTAAAAAATTGATGTAATTTAATAAGTTGGTAAAATTAGTACATATCCCCACCACCGGTGAAAAAACATGTATTTGAATGTTGCTTTCGGGGAAACTATGAATTGAAGCTTCATCTGTGCAGGTAGGAGTTAAATGTGCTATTTTCGGTGTCCTCTAGTTTGAGAAAGAGAGCTGATATCCCGTTCAGGTACTCATTCCTCTCAATTTGACTCGATTACTTTCTGTTTCTTTTCCTGGGAATAGAAAATTTGGCTACCTATGAATGAGGTCATTGTACTCGGTAACTGGGACATCGTTTCGAGCTTTGTCCAATCTTTTGTTAACCCATTCTCTGGCCATCAAGTTGGGTACCATAGCAGACGTTTACACTTGCAACAATATCCTAAGTGGGTATTGGAAATGCAAAGAGTTTCGATCTGCAGACGTACTGTTCGACGAAATGCCGCTGAGAGACTCTGTATCTTGGAACACGATGATCGCGGGGTATATTAACTCTGGAAACTTGGAGAATTCATGGGAAGTTCTTAAATGCATGAGAAGATTTGGTTTTGATCAAGATGAGTACACCTTTGGAAGCATGCTGAAGGGCATTGCTTGTGCTGGTATGCTTGATTTGGGTCAGCAAATACATTCTATGATCATTAAGATGGGTTTTGCTGGAAATGTATATGCAGGGAGTGCTCTTCTGGATATGTATGCGAAATGTGAGAGACTTGAGGATGCATATTTGACATTCCTAAATATATCTAAGCAGAACACTGTTTCGTGGAATGCAATGATTGCTGGATACGCACAAACGGGTGATCGCGAGACCGCGTTTTTGTTGTTAGATTGTATGGAGCAAGAAGGTGAGAAGGTTGATGATGGCTCATTTGCTCCTCTTTTGCCTTTACTAGATGATGCTGAGTTTTGTAGATTGACAAGGCAAGTTCATGGAAAAGTCATAAAACATGGATTGGAGTCTGCTAATACAATGTGTAATGCTTTGATCACTTCTTATTCAGAATGTGGATCCCTTGTCGATGCCAAAAGGGTTTTCAATTGTTCGGCGGGCGTTCGAGATTTGGTGTCGTGGAACTCCCTGTTGGGTGCTTTTTTGGTGCATAATCAGGAAGATCTTGCTTTTAAACTCTTGATTGATATGCAAGAACATGGTTTTGAACCAGATTTGTACTCTTACACAAGCATTATCAGTGCTTGTTTCAACAAAGAGCTTAGCAATAATGGGAAATCCCTGCATGGGATGGTCATTAAAAGAGGATTAGAACAATCAGTGCCAATTTCAAATGCATTGATATCTATGTATCTTAAATCAGACGGTGGTTCGATGAAGGAAGCTTTATGTATATTCGAATCCTTGGAGATTAAGGATCGTGTGTCGTGGAACTCGATCTTGACGGGATTATCACAAATGGGGTCGAGCGAAGATGCTGTGAAGTCGTTTCTGCATATGAGATCTTTAGCAATGGATATTGATCGGTATTCGTTTTCTGCTGTGCTCAAATCATGCTCAGATTTGGCCACCTTTCAATTGGGACAACAATTTCATGTCTTGGCGCTGAAATATGGTATGGATTCCAATGAGTTTGTTTCAAGTTCATTAATCTTCATGTATTCAAAGTGTGGGATTATGGAAGATGCTAAAAGATCATTTGAAGGAGCTTCAAAAAGCTCTTCAATCACCTGGAATGCACTCATGTTTGGCTATGCACAACATGGGCAATGCCATGTTGCATTAGACCTCTTCTTTCTAATGGAAGAGAAGAAGGTGAAAATGGATCACATAACATTCGTTGCAGTTCTGACCGCTTGTAGCCATATCGGTTTAGTCGAACGGGGCTGCGAATTCTTACGATGTATGGAATCTGATTATGGGGTTCCTCCACGAATGGAGCATTATGCTTGTGCAGTTGATCTATATGGCCGTTCTGGGCGTCTTGATGAAGCCAAGGCCTTGATTGAGGCAATGCCATTCAAGCCGAACGCGATGGTGTGGAAGACGTTCTTGGGGGCATGTCGTTCTTGTGGGAACGTTGAGTTAGCTTGTCAGGTTGCAAGGCATCTACTAGAGATGGAGCCTGAAGAGCATTGCACTTATGTTCTTCTCTCAAACATGTATGGAGATCTAATGAGATGGGAGGAGAAGGCTCAGGTGAAGAGGTTAATGAAGGAAAGAGGAGTTAAGAAAACGCCTGGTTGGAGTTGGATTGAAGTTAAGAACAAGGTTCATGCTTTCATTGCTGAAGATCGTTCTCATCCCAGTTGCCAACAGATATACTTTTTGCTGGAAGTTCTTATGGAGGAAATCACAAGAATTGAAGCTGCTGCTGATGGTTTTGAGAGTTTTTTGGAGCAGGAAGAGCTAAGTTATGCATATGCATAA

mRNA sequence

ATCTCGCGCGAGGAGGCAATGGCGAACGACGAAGAGAGAGTTCTGGAGCACCAGCTAGAGGTTCAATTGCATGAGCAGAGAGAATCTCTCGCCGCCTTGCAAGATGCCTTAGCCTCCGATGCCTCCAATCCGGAGCTTCTCGAGGTTCATGATGAGCTTGTCCAAGCAATTAAAGATGCCGAGGAAGGGCTGCTTCACCTTAAGCGTTCTAGATTACTAAGAGAAGCAGATTTGGTGTTGTGTGGTCGTGATAGTAACGCAGCGGAGGATGTTAAGGTGGAGCCTCTTCATTCTACGGACGTCGAACCTGAATCACCAGAGGATCAGAGTTTCGTCGTTGGATCGAAATGCAGATTTCGGCACACTGATGGACGTTGGTATGACGGTGAAATTGTTGGATTGGATGGTTCTAATTCTGCGAAAATTTCTTTCCTCACTCCTACAACTGAAAATATGTTGATATGCAAGTTCTTCTTACAGCAAAGGTGTCGGTTTGGCACTAGCTGCCGCTTATCGCATGGAGTTGATATCCCTTTAACCTCTCTTAGGAGATATGCGCCAACAATTTGGAATCAGTCACTGACAGGGTCCAGTATCTGGGCTCTCTCGTCCAGGAATGGCATTTGGAGGCATGCTGAACTTGAATCTTGGGATGATGCACTACAAATTGCACAAGTTGTTTTTAAAGGTGATGGATCCTCTCAAAAGCTTGGACCGGAGGACATAGCGTTATCTGTGCGTGCTCAAATTAGTGATGGAGAAGAAAGTGATTCCAGCTTGGAAAAGTCTGACTCAAGTGATTATGAAGATGATGATTTGCAGGGTTTGGGATTCCTCGAAAGCTCTACACAGCAGAGGGGCATTCAGATGGAAACCACCATATTTGCAAAATGGGAGAACCATACCCGGGGAATCGCCTCCAAGATGATGGCTAATATGGGCTATCGAGAAGGAATGGGTTTGGGTGCATCTGGGCAGGGGATGCTAAATCCTATCCCTGTCAAAGTTCTTCCAGCAAAACAATCTCTTGATCATGCTCTAGAATCACAAAAGGAGAATAATACTAACGACGAGAATAATGGCAAGAAACGAAGTAGAGGCGGTAAGAGGAAACGTGATAAGAAGTTTGCTGCAGCAATGCAGGCAGCTAAAGAGGAAGAAGACTCAAGACCTGATGTCTTTAATCTTATCAACAACCACCTTGCAATGCATAATGGAGCACCGAATGATGGATCTGTTAAGAAACAGAAAGATAAAGGTTCAGCAGATGGAAAGAAGGTAGATAGACGAACTCTAATCGCGTACGATGGTGAGGTGAAAGACCTGCGAGTACGAATAGAGAAGCTTGAAGAAATGGTGAACAGAAATAAGAATGAGAAGGTTGTTTTCGAGGCTGCCTTAAGAAAGCTGAACGAGACTCGGAAAGCTTTGGCCGAGGCCGAGGCAGCTCATGCGTCTGCATCAAATGCAGTTACCAGCAGAGAAAAGGAAAAAAAATGGTTGAAGTCATTGTACTCGGTAACTGGGACATCGTTTCGAGCTTTGTCCAATCTTTTGTTAACCCATTCTCTGGCCATCAAGTTGGGTACCATAGCAGACGTTTACACTTGCAACAATATCCTAAGTGGGTATTGGAAATGCAAAGAGTTTCGATCTGCAGACGTACTGTTCGACGAAATGCCGCTGAGAGACTCTGTATCTTGGAACACGATGATCGCGGGGTATATTAACTCTGGAAACTTGGAGAATTCATGGGAAGTTCTTAAATGCATGAGAAGATTTGGTTTTGATCAAGATGAGTACACCTTTGGAAGCATGCTGAAGGGCATTGCTTGTGCTGGTATGCTTGATTTGGGTCAGCAAATACATTCTATGATCATTAAGATGGGTTTTGCTGGAAATGTATATGCAGGGAGTGCTCTTCTGGATATGTATGCGAAATGTGAGAGACTTGAGGATGCATATTTGACATTCCTAAATATATCTAAGCAGAACACTGTTTCGTGGAATGCAATGATTGCTGGATACGCACAAACGGGTGATCGCGAGACCGCGTTTTTGTTGTTAGATTGTATGGAGCAAGAAGGTGAGAAGGTTGATGATGGCTCATTTGCTCCTCTTTTGCCTTTACTAGATGATGCTGAGTTTTGTAGATTGACAAGGCAAGTTCATGGAAAAGTCATAAAACATGGATTGGAGTCTGCTAATACAATGTGTAATGCTTTGATCACTTCTTATTCAGAATGTGGATCCCTTGTCGATGCCAAAAGGGTTTTCAATTGTTCGGCGGGCGTTCGAGATTTGGTGTCGTGGAACTCCCTGTTGGGTGCTTTTTTGGTGCATAATCAGGAAGATCTTGCTTTTAAACTCTTGATTGATATGCAAGAACATGGTTTTGAACCAGATTTGTACTCTTACACAAGCATTATCAGTGCTTGTTTCAACAAAGAGCTTAGCAATAATGGGAAATCCCTGCATGGGATGGTCATTAAAAGAGGATTAGAACAATCAGTGCCAATTTCAAATGCATTGATATCTATGTATCTTAAATCAGACGGTGGTTCGATGAAGGAAGCTTTATGTATATTCGAATCCTTGGAGATTAAGGATCGTGTGTCGTGGAACTCGATCTTGACGGGATTATCACAAATGGGGTCGAGCGAAGATGCTGTGAAGTCGTTTCTGCATATGAGATCTTTAGCAATGGATATTGATCGGTATTCGTTTTCTGCTGTGCTCAAATCATGCTCAGATTTGGCCACCTTTCAATTGGGACAACAATTTCATGTCTTGGCGCTGAAATATGGTATGGATTCCAATGAGTTTGTTTCAAGTTCATTAATCTTCATGTATTCAAAGTGTGGGATTATGGAAGATGCTAAAAGATCATTTGAAGGAGCTTCAAAAAGCTCTTCAATCACCTGGAATGCACTCATGTTTGGCTATGCACAACATGGGCAATGCCATGTTGCATTAGACCTCTTCTTTCTAATGGAAGAGAAGAAGGTGAAAATGGATCACATAACATTCGTTGCAGTTCTGACCGCTTGTAGCCATATCGGTTTAGTCGAACGGGGCTGCGAATTCTTACGATGTATGGAATCTGATTATGGGGTTCCTCCACGAATGGAGCATTATGCTTGTGCAGTTGATCTATATGGCCGTTCTGGGCGTCTTGATGAAGCCAAGGCCTTGATTGAGGCAATGCCATTCAAGCCGAACGCGATGGTGTGGAAGACGTTCTTGGGGGCATGTCGTTCTTGTGGGAACGTTGAGTTAGCTTGTCAGGTTGCAAGGCATCTACTAGAGATGGAGCCTGAAGAGCATTGCACTTATGTTCTTCTCTCAAACATGTATGGAGATCTAATGAGATGGGAGGAGAAGGCTCAGGTGAAGAGGTTAATGAAGGAAAGAGGAGTTAAGAAAACGCCTGGTTGGAGTTGGATTGAAGTTAAGAACAAGGTTCATGCTTTCATTGCTGAAGATCGTTCTCATCCCAGTTGCCAACAGATATACTTTTTGCTGGAAGTTCTTATGGAGGAAATCACAAGAATTGAAGCTGCTGCTGATGGTTTTGAGAGTTTTTTGGAGCAGGAAGAGCTAAGTTATGCATATGCATAA

Coding sequence (CDS)

ATGGCGAACGACGAAGAGAGAGTTCTGGAGCACCAGCTAGAGGTTCAATTGCATGAGCAGAGAGAATCTCTCGCCGCCTTGCAAGATGCCTTAGCCTCCGATGCCTCCAATCCGGAGCTTCTCGAGGTTCATGATGAGCTTGTCCAAGCAATTAAAGATGCCGAGGAAGGGCTGCTTCACCTTAAGCGTTCTAGATTACTAAGAGAAGCAGATTTGGTGTTGTGTGGTCGTGATAGTAACGCAGCGGAGGATGTTAAGGTGGAGCCTCTTCATTCTACGGACGTCGAACCTGAATCACCAGAGGATCAGAGTTTCGTCGTTGGATCGAAATGCAGATTTCGGCACACTGATGGACGTTGGTATGACGGTGAAATTGTTGGATTGGATGGTTCTAATTCTGCGAAAATTTCTTTCCTCACTCCTACAACTGAAAATATGTTGATATGCAAGTTCTTCTTACAGCAAAGGTGTCGGTTTGGCACTAGCTGCCGCTTATCGCATGGAGTTGATATCCCTTTAACCTCTCTTAGGAGATATGCGCCAACAATTTGGAATCAGTCACTGACAGGGTCCAGTATCTGGGCTCTCTCGTCCAGGAATGGCATTTGGAGGCATGCTGAACTTGAATCTTGGGATGATGCACTACAAATTGCACAAGTTGTTTTTAAAGGTGATGGATCCTCTCAAAAGCTTGGACCGGAGGACATAGCGTTATCTGTGCGTGCTCAAATTAGTGATGGAGAAGAAAGTGATTCCAGCTTGGAAAAGTCTGACTCAAGTGATTATGAAGATGATGATTTGCAGGGTTTGGGATTCCTCGAAAGCTCTACACAGCAGAGGGGCATTCAGATGGAAACCACCATATTTGCAAAATGGGAGAACCATACCCGGGGAATCGCCTCCAAGATGATGGCTAATATGGGCTATCGAGAAGGAATGGGTTTGGGTGCATCTGGGCAGGGGATGCTAAATCCTATCCCTGTCAAAGTTCTTCCAGCAAAACAATCTCTTGATCATGCTCTAGAATCACAAAAGGAGAATAATACTAACGACGAGAATAATGGCAAGAAACGAAGTAGAGGCGGTAAGAGGAAACGTGATAAGAAGTTTGCTGCAGCAATGCAGGCAGCTAAAGAGGAAGAAGACTCAAGACCTGATGTCTTTAATCTTATCAACAACCACCTTGCAATGCATAATGGAGCACCGAATGATGGATCTGTTAAGAAACAGAAAGATAAAGGTTCAGCAGATGGAAAGAAGGTAGATAGACGAACTCTAATCGCGTACGATGGTGAGGTGAAAGACCTGCGAGTACGAATAGAGAAGCTTGAAGAAATGGTGAACAGAAATAAGAATGAGAAGGTTGTTTTCGAGGCTGCCTTAAGAAAGCTGAACGAGACTCGGAAAGCTTTGGCCGAGGCCGAGGCAGCTCATGCGTCTGCATCAAATGCAGTTACCAGCAGAGAAAAGGAAAAAAAATGGTTGAAGTCATTGTACTCGGTAACTGGGACATCGTTTCGAGCTTTGTCCAATCTTTTGTTAACCCATTCTCTGGCCATCAAGTTGGGTACCATAGCAGACGTTTACACTTGCAACAATATCCTAAGTGGGTATTGGAAATGCAAAGAGTTTCGATCTGCAGACGTACTGTTCGACGAAATGCCGCTGAGAGACTCTGTATCTTGGAACACGATGATCGCGGGGTATATTAACTCTGGAAACTTGGAGAATTCATGGGAAGTTCTTAAATGCATGAGAAGATTTGGTTTTGATCAAGATGAGTACACCTTTGGAAGCATGCTGAAGGGCATTGCTTGTGCTGGTATGCTTGATTTGGGTCAGCAAATACATTCTATGATCATTAAGATGGGTTTTGCTGGAAATGTATATGCAGGGAGTGCTCTTCTGGATATGTATGCGAAATGTGAGAGACTTGAGGATGCATATTTGACATTCCTAAATATATCTAAGCAGAACACTGTTTCGTGGAATGCAATGATTGCTGGATACGCACAAACGGGTGATCGCGAGACCGCGTTTTTGTTGTTAGATTGTATGGAGCAAGAAGGTGAGAAGGTTGATGATGGCTCATTTGCTCCTCTTTTGCCTTTACTAGATGATGCTGAGTTTTGTAGATTGACAAGGCAAGTTCATGGAAAAGTCATAAAACATGGATTGGAGTCTGCTAATACAATGTGTAATGCTTTGATCACTTCTTATTCAGAATGTGGATCCCTTGTCGATGCCAAAAGGGTTTTCAATTGTTCGGCGGGCGTTCGAGATTTGGTGTCGTGGAACTCCCTGTTGGGTGCTTTTTTGGTGCATAATCAGGAAGATCTTGCTTTTAAACTCTTGATTGATATGCAAGAACATGGTTTTGAACCAGATTTGTACTCTTACACAAGCATTATCAGTGCTTGTTTCAACAAAGAGCTTAGCAATAATGGGAAATCCCTGCATGGGATGGTCATTAAAAGAGGATTAGAACAATCAGTGCCAATTTCAAATGCATTGATATCTATGTATCTTAAATCAGACGGTGGTTCGATGAAGGAAGCTTTATGTATATTCGAATCCTTGGAGATTAAGGATCGTGTGTCGTGGAACTCGATCTTGACGGGATTATCACAAATGGGGTCGAGCGAAGATGCTGTGAAGTCGTTTCTGCATATGAGATCTTTAGCAATGGATATTGATCGGTATTCGTTTTCTGCTGTGCTCAAATCATGCTCAGATTTGGCCACCTTTCAATTGGGACAACAATTTCATGTCTTGGCGCTGAAATATGGTATGGATTCCAATGAGTTTGTTTCAAGTTCATTAATCTTCATGTATTCAAAGTGTGGGATTATGGAAGATGCTAAAAGATCATTTGAAGGAGCTTCAAAAAGCTCTTCAATCACCTGGAATGCACTCATGTTTGGCTATGCACAACATGGGCAATGCCATGTTGCATTAGACCTCTTCTTTCTAATGGAAGAGAAGAAGGTGAAAATGGATCACATAACATTCGTTGCAGTTCTGACCGCTTGTAGCCATATCGGTTTAGTCGAACGGGGCTGCGAATTCTTACGATGTATGGAATCTGATTATGGGGTTCCTCCACGAATGGAGCATTATGCTTGTGCAGTTGATCTATATGGCCGTTCTGGGCGTCTTGATGAAGCCAAGGCCTTGATTGAGGCAATGCCATTCAAGCCGAACGCGATGGTGTGGAAGACGTTCTTGGGGGCATGTCGTTCTTGTGGGAACGTTGAGTTAGCTTGTCAGGTTGCAAGGCATCTACTAGAGATGGAGCCTGAAGAGCATTGCACTTATGTTCTTCTCTCAAACATGTATGGAGATCTAATGAGATGGGAGGAGAAGGCTCAGGTGAAGAGGTTAATGAAGGAAAGAGGAGTTAAGAAAACGCCTGGTTGGAGTTGGATTGAAGTTAAGAACAAGGTTCATGCTTTCATTGCTGAAGATCGTTCTCATCCCAGTTGCCAACAGATATACTTTTTGCTGGAAGTTCTTATGGAGGAAATCACAAGAATTGAAGCTGCTGCTGATGGTTTTGAGAGTTTTTTGGAGCAGGAAGAGCTAAGTTATGCATATGCATAA

Protein sequence

MANDEERVLEHQLEVQLHEQRESLAALQDALASDASNPELLEVHDELVQAIKDAEEGLLHLKRSRLLREADLVLCGRDSNAAEDVKVEPLHSTDVEPESPEDQSFVVGSKCRFRHTDGRWYDGEIVGLDGSNSAKISFLTPTTENMLICKFFLQQRCRFGTSCRLSHGVDIPLTSLRRYAPTIWNQSLTGSSIWALSSRNGIWRHAELESWDDALQIAQVVFKGDGSSQKLGPEDIALSVRAQISDGEESDSSLEKSDSSDYEDDDLQGLGFLESSTQQRGIQMETTIFAKWENHTRGIASKMMANMGYREGMGLGASGQGMLNPIPVKVLPAKQSLDHALESQKENNTNDENNGKKRSRGGKRKRDKKFAAAMQAAKEEEDSRPDVFNLINNHLAMHNGAPNDGSVKKQKDKGSADGKKVDRRTLIAYDGEVKDLRVRIEKLEEMVNRNKNEKVVFEAALRKLNETRKALAEAEAAHASASNAVTSREKEKKWLKSLYSVTGTSFRALSNLLLTHSLAIKLGTIADVYTCNNILSGYWKCKEFRSADVLFDEMPLRDSVSWNTMIAGYINSGNLENSWEVLKCMRRFGFDQDEYTFGSMLKGIACAGMLDLGQQIHSMIIKMGFAGNVYAGSALLDMYAKCERLEDAYLTFLNISKQNTVSWNAMIAGYAQTGDRETAFLLLDCMEQEGEKVDDGSFAPLLPLLDDAEFCRLTRQVHGKVIKHGLESANTMCNALITSYSECGSLVDAKRVFNCSAGVRDLVSWNSLLGAFLVHNQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNKELSNNGKSLHGMVIKRGLEQSVPISNALISMYLKSDGGSMKEALCIFESLEIKDRVSWNSILTGLSQMGSSEDAVKSFLHMRSLAMDIDRYSFSAVLKSCSDLATFQLGQQFHVLALKYGMDSNEFVSSSLIFMYSKCGIMEDAKRSFEGASKSSSITWNALMFGYAQHGQCHVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVERGCEFLRCMESDYGVPPRMEHYACAVDLYGRSGRLDEAKALIEAMPFKPNAMVWKTFLGACRSCGNVELACQVARHLLEMEPEEHCTYVLLSNMYGDLMRWEEKAQVKRLMKERGVKKTPGWSWIEVKNKVHAFIAEDRSHPSCQQIYFLLEVLMEEITRIEAAADGFESFLEQEELSYAYA

Homology

[Close]

BLAST of CmaCh05G003410 vs. ExPASy Swiss-Prot
Match: Q9LU94 (Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E46 PE=3 SV=2)

HSP 1 Score: 796.6 bits (2056), Expect = 3.9e-229
Identity = 387/686 (56.41%), Postives = 505/686 (73.62%), Query Frame = 0


Query: 498  LYSVTGTSFRALSNLLLTHSLAIKLGTIADVYTCNNILSGYWKCKEFRSADVLFDEMPLR 557
            L S+  +S  +   L LTH  AIK G+I+D+Y  N IL  Y K      A++LFDEMP R
Sbjct: 5    LASLLESSLNSFQKLSLTHCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKR 64

Query: 558  DSVSWNTMIAGYINSGNLENSWEVLKCMRRFGFDQDEYTFGSMLKGIACAGMLDLGQQIH 617
            DSVSWNTMI+GY + G LE++W +  CM+R G D D Y+F  +LKGIA     DLG+Q+H
Sbjct: 65   DSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVH 124

Query: 618  SMIIKMGFAGNVYAGSALLDMYAKCERLEDAYLTFLNISKQNTVSWNAMIAGYAQTGDRE 677
             ++IK G+  NVY GS+L+DMYAKCER+EDA+  F  IS+ N+VSWNA+IAG+ Q  D +
Sbjct: 125  GLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIK 184

Query: 678  TAFLLLDCMEQEGE-KVDDGSFAPLLPLLDDAEFCRLTRQVHGKVIKHGLESANTMCNAL 737
            TAF LL  ME +    +D G+FAPLL LLDD  FC L +QVH KV+K GL+   T+CNA+
Sbjct: 185  TAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAM 244

Query: 738  ITSYSECGSLVDAKRVFNCSAGVRDLVSWNSLLGAFLVHNQEDLAFKLLIDMQEHGFEPD 797
            I+SY++CGS+ DAKRVF+   G +DL+SWNS++  F  H  ++ AF+L I MQ H  E D
Sbjct: 245  ISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETD 304

Query: 798  LYSYTSIISACFNKELSNNGKSLHGMVIKRGLEQSVPISNALISMYLKSDGGSMKEALCI 857
            +Y+YT ++SAC  +E    GKSLHGMVIK+GLEQ    +NALISMY++   G+M++AL +
Sbjct: 305  IYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSL 364

Query: 858  FESLEIKDRVSWNSILTGLSQMGSSEDAVKSFLHMRSLAMDIDRYSFSAVLKSCSDLATF 917
            FESL+ KD +SWNSI+TG +Q G SEDAVK F ++RS  + +D Y+FSA+L+SCSDLAT 
Sbjct: 365  FESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATL 424

Query: 918  QLGQQFHVLALKYGMDSNEFVSSSLIFMYSKCGIMEDAKRSFEG-ASKSSSITWNALMFG 977
            QLGQQ H LA K G  SNEFV SSLI MYSKCGI+E A++ F+  +SK S++ WNA++ G
Sbjct: 425  QLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILG 484

Query: 978  YAQHGQCHVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVERGCEFLRCMESDYGVPP 1037
            YAQHG   V+LDLF  M  + VK+DH+TF A+LTACSH GL++ G E L  ME  Y + P
Sbjct: 485  YAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQP 544

Query: 1038 RMEHYACAVDLYGRSGRLDEAKALIEAMPFKPNAMVWKTFLGACRSCGNVELACQVARHL 1097
            RMEHYA AVDL GR+G +++AK LIE+MP  P+ MV KTFLG CR+CG +E+A QVA HL
Sbjct: 545  RMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHL 604

Query: 1098 LEMEPEEHCTYVLLSNMYGDLMRWEEKAQVKRLMKERGVKKTPGWSWIEVKNKVHAFIAE 1157
            LE+EPE+H TYV LS+MY DL +WEEKA VK++MKERGVKK PGWSWIE++N+V AF AE
Sbjct: 605  LEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAE 664

Query: 1158 DRSHPSCQQIYFLLEVLMEEITRIEA 1182
            DRS+P CQ IY +++ L +E+  +++
Sbjct: 665  DRSNPLCQDIYMMIKDLTQEMQWLDS 690

[Close]

BLAST of CmaCh05G003410 vs. ExPASy Swiss-Prot
Match: Q9SK49 (Zinc finger CCCH domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=At2g24830 PE=2 SV=1)

HSP 1 Score: 536.6 bits (1381), Expect = 7.3e-151
Identity = 297/508 (58.46%), Postives = 377/508 (74.21%), Query Frame = 0


Query: 1   MANDEERVLEHQLEVQLHEQRESLAALQDALASDASNPELLEVHDELVQAIKDAEEGLLH 60
           MA++E   LE+ L++QL EQ+ESL+++ +AL SD SNPELL VH+EL+ AIK+ EEGLLH
Sbjct: 1   MASEENNDLENLLDIQLIEQKESLSSIDEALLSDPSNPELLSVHEELLSAIKEVEEGLLH 60

Query: 61  LKRSRLLREADLVLCGRDSNAAEDVKVEPLHSTDVEPESPEDQSFVVGSKCRFRHTDGRW 120
           LKR+RLL EAD+VL G +     D  V+P H   +EPE  E++  + GSKCRFRHTDGRW
Sbjct: 61  LKRARLLEEADIVLNGLN----HDAGVKPEH---LEPEKTEEKKDLDGSKCRFRHTDGRW 120

Query: 121 YDGEIVGLDGSNSAKISFLTPTTENMLICKFFLQQRCRFGTSCRLSHGVDIPLTSLRRYA 180
           Y+G I+G +GS+SAKISFLTPT+E+M+ICKFF+QQRCRFG+SCR SHG+D+P++SL+ Y 
Sbjct: 121 YNGRIIGFEGSDSAKISFLTPTSESMMICKFFMQQRCRFGSSCRSSHGLDVPISSLKNYE 180

Query: 181 PTIWNQSLTGSSIWALS-SRNGIWRHAELESWDDALQIAQVVFKGDGSSQKLGPEDIALS 240
            T W Q + GS IWA+S S+  IWR AELESWDD LQ+  VVF+ D SS KLG + +ALS
Sbjct: 181 QTEWKQLMVGSKIWAVSGSKYDIWRKAELESWDDELQVGGVVFRDDKSSAKLGSDSLALS 240

Query: 241 VRAQIS--DGEE--------SDSSLEKSDSSDYEDDDLQGLGFLESSTQQRGIQMETTIF 300
             AQ++  DGEE        S S  E S SSDY++   QG+GFLES+   RG+Q +T +F
Sbjct: 241 EYAQMTDDDGEEEEEEDEQQSASDSEDSVSSDYDEGSPQGIGFLESTNLPRGVQTDTALF 300

Query: 301 AKWENHTRGIASKMMANMGYREGMGLGASGQGMLNPIPVKVLPAKQSLDHALESQKENNT 360
           AKWENHTRGIASKMMA+MGYREGMGLG SGQG+LNPI VKVLPAK+SLD+ALE  +    
Sbjct: 301 AKWENHTRGIASKMMASMGYREGMGLGVSGQGILNPILVKVLPAKRSLDYALEHIRNGEC 360

Query: 361 NDENNGKKRSRGGKRKRDKKFAAAMQAAKEEEDSRPDVFNLINNHL-AMHNGAPNDGSVK 420
             E   KKRSRGGKRKR KKFA A +AAK+EE+S+PD+F+LIN  +    +   +  SVK
Sbjct: 361 KSEKQKKKRSRGGKRKRGKKFAEAAKAAKQEEESKPDLFSLINEQIFPTRHEKVHSESVK 420

Query: 421 KQKDKGSADGKKVDRRTLIAYDGEVKDLRVRIEKLEEMVNRNKNEKVVFEAALRKLNETR 480
            +++KG      VDR+ L+ Y  EV+DL++ + KLE+MVNRNK + VV EAA R+L E R
Sbjct: 421 NRQNKG-----PVDRKALVEYQDEVRDLKLEMLKLEQMVNRNKKDLVVSEAATRRLKEVR 480

Query: 481 KALAEAEAAHASASNAVTSREKEKKWLK 497
           KALA   A  A+ASNA+ S+E EKKWLK
Sbjct: 481 KALASTLACQAAASNAIVSKENEKKWLK 496

[Close]

BLAST of CmaCh05G003410 vs. ExPASy Swiss-Prot
Match: Q6K687 (Zinc finger CCCH domain-containing protein 18 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0793000 PE=2 SV=1)

HSP 1 Score: 527.3 bits (1357), Expect = 4.4e-148
Identity = 296/502 (58.96%), Postives = 372/502 (74.10%), Query Frame = 0


Query: 4   DEERVLEHQLEVQLHEQRESLAALQDALASDASNPELLEVHDELVQAIKDAEEGLLHLKR 63
           DE   +E QLE  L EQR SL A+ +ALA+D SN +LLEVH+EL+ AIKDAEEGLLHLKR
Sbjct: 8   DEAASIELQLEHHLQEQRASLTAVDEALAADPSNADLLEVHEELLAAIKDAEEGLLHLKR 67

Query: 64  SRLLREADLVLCGRD-SNAAEDVKVEPLHSTDVEPESPEDQSFVVGSKCRFRHTDGRWYD 123
           SRL+++ D +   ++ ++ A +V V+P    DVEPE  E Q F VGSKCRFRH DGRWY+
Sbjct: 68  SRLVKQIDEIFPNQEPTSEAPEVAVDP--PDDVEPEPLEPQEFSVGSKCRFRHKDGRWYN 127

Query: 124 GEIVGLDGSNSAKISFLTPTTENMLICKFFLQQRCRFGTSCRLSHGVDIPLTSLRRYAPT 183
           G ++GL+GS+ A+ISFLTPT+ENM +CKFFLQQRCRFG++CRLSHG+ IP+ SL+++ PT
Sbjct: 128 GCVIGLEGSSDARISFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLKQFTPT 187

Query: 184 IWNQSLTGSSIWALSS-RNGIWRHAELESWDDALQIAQVVFKGDGSSQKLGPEDIALSVR 243
            W QSL GSSI A S   +G+WR AELESWDD L++ QVVF+ DGSS +L  + +++S  
Sbjct: 188 RWQQSLVGSSILAASGHHSGLWRRAELESWDDDLKVGQVVFQDDGSSARLPSDSLSISEY 247

Query: 244 AQISD----GEESDSSLEKSDSSDYEDDDL-QGLGFLESSTQQRGIQMETTIFAKWENHT 303
           A  SD    G  SD   + S+  D ED+ + QGLG LES     G+Q ET IFAKWE+HT
Sbjct: 248 ADESDEDGEGSSSDEGSDFSEDGDQEDESVHQGLGLLESKNLS-GVQTETAIFAKWEHHT 307

Query: 304 RGIASKMMANMGYREGMGLGASGQGMLNPIPVKVLPAKQSLDHALESQKENNTNDENNGK 363
           RG+ASKMMA MGYREGMGLG SGQGML+PIPVKVLP KQSLDHA+ + + N++     GK
Sbjct: 308 RGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHAVAASEVNDS--VGPGK 367

Query: 364 KRSRGGKRKRDKKFAAAMQAAKEEEDSRPDVFNLINNHLAMHNGAPNDGSVKKQKDKGSA 423
           KRSRGGKRKR+KKFA   +AAK EE+ R  VF+ IN+ L   + A       K+   G A
Sbjct: 368 KRSRGGKRKREKKFAEQARAAKAEEEER-SVFSFINSQLVGQDVAEGSAVKSKKDSSGEA 427

Query: 424 DG--KKVDRRTLIAYDGEVKDLRVRIEKLEEMVNRNKNEKVVFEAALRKLNETRKALAEA 483
           +G  KK DRR+L+AYD EVK+LR R+EKLEEM+ RN+ +K  +EAA +KL +TRKALA+A
Sbjct: 428 NGHAKKEDRRSLLAYDDEVKELRSRVEKLEEMMKRNRKDKAFYEAASKKLKQTRKALADA 487

Query: 484 EAAHASASNAVTSREKEKKWLK 497
           EA HASA+NAV  +EKEKKWLK
Sbjct: 488 EATHASATNAVARKEKEKKWLK 503

[Close]

BLAST of CmaCh05G003410 vs. ExPASy Swiss-Prot
Match: Q9SVP7 (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 471.5 bits (1212), Expect = 2.9e-131
Identity = 239/671 (35.62%), Postives = 373/671 (55.59%), Query Frame = 0


Query: 516  HSLAIKLGTIADVYTCNNILSGYWKCKEFRSADVLFDEMPLRDSVSWNTMIAGYINSGNL 575
            H L +KLG  +D Y CN ++S Y+      SA+ +F  M  RD+V++NT+I G    G  
Sbjct: 311  HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 370

Query: 576  ENSWEVLKCMRRFGFDQDEYTFGSMLKGIACAGMLDLGQQIHSMIIKMGFAGNVYAGSAL 635
            E + E+ K M   G + D  T  S++   +  G L  GQQ+H+   K+GFA N     AL
Sbjct: 371  EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGAL 430

Query: 636  LDMYAKCERLEDAYLTFLNISKQNTVSWNAMIAGYAQTGDRETAFLLLDCMEQEGEKVDD 695
            L++YAKC  +E A   FL    +N V WN M+  Y    D   +F +   M+ E    + 
Sbjct: 431  LNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 490

Query: 696  GSFAPLLPLLDDAEFCRLTRQVHGKVIKHGLESANTMCNALITSYSECGSLVDAKRVFNC 755
             ++  +L          L  Q+H ++IK   +    +C+ LI  Y++ G L  A  +   
Sbjct: 491  YTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIR 550

Query: 756  SAGVRDLVSWNSLLGAFLVHNQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNKELSNN 815
             AG +D+VSW +++  +  +N +D A      M + G   D    T+ +SAC   +    
Sbjct: 551  FAG-KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 610

Query: 816  GKSLHGMVIKRGLEQSVPISNALISMYLKSDGGSMKEALCIFESLEIKDRVSWNSILTGL 875
            G+ +H      G    +P  NAL+++Y  S  G ++E+   FE  E  D ++WN++++G 
Sbjct: 611  GQQIHAQACVSGFSSDLPFQNALVTLY--SRCGKIEESYLAFEQTEAGDNIAWNALVSGF 670

Query: 876  SQMGSSEDAVKSFLHMRSLAMDIDRYSFSAVLKSCSDLATFQLGQQFHVLALKYGMDSNE 935
             Q G++E+A++ F+ M    +D + ++F + +K+ S+ A  + G+Q H +  K G DS  
Sbjct: 671  QQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSET 730

Query: 936  FVSSSLIFMYSKCGIMEDAKRSFEGASKSSSITWNALMFGYAQHGQCHVALDLFFLMEEK 995
             V ++LI MY+KCG + DA++ F   S  + ++WNA++  Y++HG    ALD F  M   
Sbjct: 731  EVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHS 790

Query: 996  KVKMDHITFVAVLTACSHIGLVERGCEFLRCMESDYGVPPRMEHYACAVDLYGRSGRLDE 1055
             V+ +H+T V VL+ACSHIGLV++G  +   M S+YG+ P+ EHY C VD+  R+G L  
Sbjct: 791  NVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSR 850

Query: 1056 AKALIEAMPFKPNAMVWKTFLGACRSCGNVELACQVARHLLEMEPEEHCTYVLLSNMYGD 1115
            AK  I+ MP KP+A+VW+T L AC    N+E+    A HLLE+EPE+  TYVLLSN+Y  
Sbjct: 851  AKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAV 910

Query: 1116 LMRWEEKAQVKRLMKERGVKKTPGWSWIEVKNKVHAFIAEDRSHPSCQQIYFLLEVLMEE 1175
              +W+ +   ++ MKE+GVKK PG SWIEVKN +H+F   D++HP   +I+   + L + 
Sbjct: 911  SKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKR 970

Query: 1176 ITRIEAAADGF 1187
             + I    D F
Sbjct: 971  ASEIGYVQDCF 978

[Close]

BLAST of CmaCh05G003410 vs. ExPASy Swiss-Prot
Match: Q9ZUW3 (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 5.3e-125
Identity = 234/658 (35.56%), Postives = 384/658 (58.36%), Query Frame = 0


Query: 516  HSLAIKLGTIADVYTCNNILSGYWKCKEFRSADVLFDEMPLRDSVSWNTMIAGYINSGNL 575
            H   IK G + DV    +++  Y K   F+    +FDEM  R+ V+W T+I+GY  +   
Sbjct: 116  HCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMN 175

Query: 576  ENSWEVLKCMRRFGFDQDEYTFGSMLKGIACAGMLDLGQQIHSMIIKMGFAGNVYAGSAL 635
            +    +   M+  G   + +TF + L  +A  G+   G Q+H++++K G    +   ++L
Sbjct: 176  DEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSL 235

Query: 636  LDMYAKCERLEDAYLTFLNISKQNTVSWNAMIAGYAQTGDRETAFLLLDCMEQEGEKVDD 695
            +++Y KC  +  A + F     ++ V+WN+MI+GYA  G    A  +   M     ++ +
Sbjct: 236  INLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSE 295

Query: 696  GSFAPLLPLLDDAEFCRLTRQVHGKVIKHGLESANTMCNALITSYSECGSLVDAKRVFNC 755
             SFA ++ L  + +  R T Q+H  V+K+G      +  AL+ +YS+C +++DA R+F  
Sbjct: 296  SSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKE 355

Query: 756  SAGVRDLVSWNSLLGAFLVHNQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNKELSNN 815
               V ++VSW +++  FL ++ ++ A  L  +M+  G  P+ ++Y+ I++A        +
Sbjct: 356  IGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL----PVIS 415

Query: 816  GKSLHGMVIKRGLEQSVPISNALISMYLKSDGGSMKEALCIFESLEIKDRVSWNSILTGL 875
               +H  V+K   E+S  +  AL+  Y+K   G ++EA  +F  ++ KD V+W+++L G 
Sbjct: 416  PSEVHAQVVKTNYERSSTVGTALLDAYVKL--GKVEEAAKVFSGIDDKDIVAWSAMLAGY 475

Query: 876  SQMGSSEDAVKSFLHMRSLAMDIDRYSFSAVLKSCSDL-ATFQLGQQFHVLALKYGMDSN 935
            +Q G +E A+K F  +    +  + ++FS++L  C+   A+   G+QFH  A+K  +DS+
Sbjct: 476  AQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSS 535

Query: 936  EFVSSSLIFMYSKCGIMEDAKRSFEGASKSSSITWNALMFGYAQHGQCHVALDLFFLMEE 995
              VSS+L+ MY+K G +E A+  F+   +   ++WN+++ GYAQHGQ   ALD+F  M++
Sbjct: 536  LCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKK 595

Query: 996  KKVKMDHITFVAVLTACSHIGLVERGCEFLRCMESDYGVPPRMEHYACAVDLYGRSGRLD 1055
            +KVKMD +TF+ V  AC+H GLVE G ++   M  D  + P  EH +C VDLY R+G+L+
Sbjct: 596  RKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLE 655

Query: 1056 EAKALIEAMPFKPNAMVWKTFLGACRSCGNVELACQVARHLLEMEPEEHCTYVLLSNMYG 1115
            +A  +IE MP    + +W+T L ACR     EL    A  ++ M+PE+   YVLLSNMY 
Sbjct: 656  KAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYA 715

Query: 1116 DLMRWEEKAQVKRLMKERGVKKTPGWSWIEVKNKVHAFIAEDRSHPSCQQIYFLLEVL 1173
            +   W+E+A+V++LM ER VKK PG+SWIEVKNK ++F+A DRSHP   QIY  LE L
Sbjct: 716  ESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDL 767

[Close]

BLAST of CmaCh05G003410 vs. TAIR 10
Match: AT3G25970.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 796.6 bits (2056), Expect = 2.8e-230
Identity = 387/686 (56.41%), Postives = 505/686 (73.62%), Query Frame = 0


Query: 498  LYSVTGTSFRALSNLLLTHSLAIKLGTIADVYTCNNILSGYWKCKEFRSADVLFDEMPLR 557
            L S+  +S  +   L LTH  AIK G+I+D+Y  N IL  Y K      A++LFDEMP R
Sbjct: 5    LASLLESSLNSFQKLSLTHCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKR 64

Query: 558  DSVSWNTMIAGYINSGNLENSWEVLKCMRRFGFDQDEYTFGSMLKGIACAGMLDLGQQIH 617
            DSVSWNTMI+GY + G LE++W +  CM+R G D D Y+F  +LKGIA     DLG+Q+H
Sbjct: 65   DSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVH 124

Query: 618  SMIIKMGFAGNVYAGSALLDMYAKCERLEDAYLTFLNISKQNTVSWNAMIAGYAQTGDRE 677
             ++IK G+  NVY GS+L+DMYAKCER+EDA+  F  IS+ N+VSWNA+IAG+ Q  D +
Sbjct: 125  GLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIK 184

Query: 678  TAFLLLDCMEQEGE-KVDDGSFAPLLPLLDDAEFCRLTRQVHGKVIKHGLESANTMCNAL 737
            TAF LL  ME +    +D G+FAPLL LLDD  FC L +QVH KV+K GL+   T+CNA+
Sbjct: 185  TAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAM 244

Query: 738  ITSYSECGSLVDAKRVFNCSAGVRDLVSWNSLLGAFLVHNQEDLAFKLLIDMQEHGFEPD 797
            I+SY++CGS+ DAKRVF+   G +DL+SWNS++  F  H  ++ AF+L I MQ H  E D
Sbjct: 245  ISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETD 304

Query: 798  LYSYTSIISACFNKELSNNGKSLHGMVIKRGLEQSVPISNALISMYLKSDGGSMKEALCI 857
            +Y+YT ++SAC  +E    GKSLHGMVIK+GLEQ    +NALISMY++   G+M++AL +
Sbjct: 305  IYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSL 364

Query: 858  FESLEIKDRVSWNSILTGLSQMGSSEDAVKSFLHMRSLAMDIDRYSFSAVLKSCSDLATF 917
            FESL+ KD +SWNSI+TG +Q G SEDAVK F ++RS  + +D Y+FSA+L+SCSDLAT 
Sbjct: 365  FESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATL 424

Query: 918  QLGQQFHVLALKYGMDSNEFVSSSLIFMYSKCGIMEDAKRSFEG-ASKSSSITWNALMFG 977
            QLGQQ H LA K G  SNEFV SSLI MYSKCGI+E A++ F+  +SK S++ WNA++ G
Sbjct: 425  QLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILG 484

Query: 978  YAQHGQCHVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVERGCEFLRCMESDYGVPP 1037
            YAQHG   V+LDLF  M  + VK+DH+TF A+LTACSH GL++ G E L  ME  Y + P
Sbjct: 485  YAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQP 544

Query: 1038 RMEHYACAVDLYGRSGRLDEAKALIEAMPFKPNAMVWKTFLGACRSCGNVELACQVARHL 1097
            RMEHYA AVDL GR+G +++AK LIE+MP  P+ MV KTFLG CR+CG +E+A QVA HL
Sbjct: 545  RMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHL 604

Query: 1098 LEMEPEEHCTYVLLSNMYGDLMRWEEKAQVKRLMKERGVKKTPGWSWIEVKNKVHAFIAE 1157
            LE+EPE+H TYV LS+MY DL +WEEKA VK++MKERGVKK PGWSWIE++N+V AF AE
Sbjct: 605  LEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAE 664

Query: 1158 DRSHPSCQQIYFLLEVLMEEITRIEA 1182
            DRS+P CQ IY +++ L +E+  +++
Sbjct: 665  DRSNPLCQDIYMMIKDLTQEMQWLDS 690

[Close]

BLAST of CmaCh05G003410 vs. TAIR 10
Match: AT2G24830.1 (zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein )

HSP 1 Score: 536.6 bits (1381), Expect = 5.2e-152
Identity = 297/508 (58.46%), Postives = 377/508 (74.21%), Query Frame = 0


Query: 1   MANDEERVLEHQLEVQLHEQRESLAALQDALASDASNPELLEVHDELVQAIKDAEEGLLH 60
           MA++E   LE+ L++QL EQ+ESL+++ +AL SD SNPELL VH+EL+ AIK+ EEGLLH
Sbjct: 1   MASEENNDLENLLDIQLIEQKESLSSIDEALLSDPSNPELLSVHEELLSAIKEVEEGLLH 60

Query: 61  LKRSRLLREADLVLCGRDSNAAEDVKVEPLHSTDVEPESPEDQSFVVGSKCRFRHTDGRW 120
           LKR+RLL EAD+VL G +     D  V+P H   +EPE  E++  + GSKCRFRHTDGRW
Sbjct: 61  LKRARLLEEADIVLNGLN----HDAGVKPEH---LEPEKTEEKKDLDGSKCRFRHTDGRW 120

Query: 121 YDGEIVGLDGSNSAKISFLTPTTENMLICKFFLQQRCRFGTSCRLSHGVDIPLTSLRRYA 180
           Y+G I+G +GS+SAKISFLTPT+E+M+ICKFF+QQRCRFG+SCR SHG+D+P++SL+ Y 
Sbjct: 121 YNGRIIGFEGSDSAKISFLTPTSESMMICKFFMQQRCRFGSSCRSSHGLDVPISSLKNYE 180

Query: 181 PTIWNQSLTGSSIWALS-SRNGIWRHAELESWDDALQIAQVVFKGDGSSQKLGPEDIALS 240
            T W Q + GS IWA+S S+  IWR AELESWDD LQ+  VVF+ D SS KLG + +ALS
Sbjct: 181 QTEWKQLMVGSKIWAVSGSKYDIWRKAELESWDDELQVGGVVFRDDKSSAKLGSDSLALS 240

Query: 241 VRAQIS--DGEE--------SDSSLEKSDSSDYEDDDLQGLGFLESSTQQRGIQMETTIF 300
             AQ++  DGEE        S S  E S SSDY++   QG+GFLES+   RG+Q +T +F
Sbjct: 241 EYAQMTDDDGEEEEEEDEQQSASDSEDSVSSDYDEGSPQGIGFLESTNLPRGVQTDTALF 300

Query: 301 AKWENHTRGIASKMMANMGYREGMGLGASGQGMLNPIPVKVLPAKQSLDHALESQKENNT 360
           AKWENHTRGIASKMMA+MGYREGMGLG SGQG+LNPI VKVLPAK+SLD+ALE  +    
Sbjct: 301 AKWENHTRGIASKMMASMGYREGMGLGVSGQGILNPILVKVLPAKRSLDYALEHIRNGEC 360

Query: 361 NDENNGKKRSRGGKRKRDKKFAAAMQAAKEEEDSRPDVFNLINNHL-AMHNGAPNDGSVK 420
             E   KKRSRGGKRKR KKFA A +AAK+EE+S+PD+F+LIN  +    +   +  SVK
Sbjct: 361 KSEKQKKKRSRGGKRKRGKKFAEAAKAAKQEEESKPDLFSLINEQIFPTRHEKVHSESVK 420

Query: 421 KQKDKGSADGKKVDRRTLIAYDGEVKDLRVRIEKLEEMVNRNKNEKVVFEAALRKLNETR 480
            +++KG      VDR+ L+ Y  EV+DL++ + KLE+MVNRNK + VV EAA R+L E R
Sbjct: 421 NRQNKG-----PVDRKALVEYQDEVRDLKLEMLKLEQMVNRNKKDLVVSEAATRRLKEVR 480

Query: 481 KALAEAEAAHASASNAVTSREKEKKWLK 497
           KALA   A  A+ASNA+ S+E EKKWLK
Sbjct: 481 KALASTLACQAAASNAIVSKENEKKWLK 496

[Close]

BLAST of CmaCh05G003410 vs. TAIR 10
Match: AT4G13650.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 471.5 bits (1212), Expect = 2.1e-132
Identity = 239/671 (35.62%), Postives = 373/671 (55.59%), Query Frame = 0


Query: 516  HSLAIKLGTIADVYTCNNILSGYWKCKEFRSADVLFDEMPLRDSVSWNTMIAGYINSGNL 575
            H L +KLG  +D Y CN ++S Y+      SA+ +F  M  RD+V++NT+I G    G  
Sbjct: 311  HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 370

Query: 576  ENSWEVLKCMRRFGFDQDEYTFGSMLKGIACAGMLDLGQQIHSMIIKMGFAGNVYAGSAL 635
            E + E+ K M   G + D  T  S++   +  G L  GQQ+H+   K+GFA N     AL
Sbjct: 371  EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGAL 430

Query: 636  LDMYAKCERLEDAYLTFLNISKQNTVSWNAMIAGYAQTGDRETAFLLLDCMEQEGEKVDD 695
            L++YAKC  +E A   FL    +N V WN M+  Y    D   +F +   M+ E    + 
Sbjct: 431  LNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 490

Query: 696  GSFAPLLPLLDDAEFCRLTRQVHGKVIKHGLESANTMCNALITSYSECGSLVDAKRVFNC 755
             ++  +L          L  Q+H ++IK   +    +C+ LI  Y++ G L  A  +   
Sbjct: 491  YTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIR 550

Query: 756  SAGVRDLVSWNSLLGAFLVHNQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNKELSNN 815
             AG +D+VSW +++  +  +N +D A      M + G   D    T+ +SAC   +    
Sbjct: 551  FAG-KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKE 610

Query: 816  GKSLHGMVIKRGLEQSVPISNALISMYLKSDGGSMKEALCIFESLEIKDRVSWNSILTGL 875
            G+ +H      G    +P  NAL+++Y  S  G ++E+   FE  E  D ++WN++++G 
Sbjct: 611  GQQIHAQACVSGFSSDLPFQNALVTLY--SRCGKIEESYLAFEQTEAGDNIAWNALVSGF 670

Query: 876  SQMGSSEDAVKSFLHMRSLAMDIDRYSFSAVLKSCSDLATFQLGQQFHVLALKYGMDSNE 935
             Q G++E+A++ F+ M    +D + ++F + +K+ S+ A  + G+Q H +  K G DS  
Sbjct: 671  QQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSET 730

Query: 936  FVSSSLIFMYSKCGIMEDAKRSFEGASKSSSITWNALMFGYAQHGQCHVALDLFFLMEEK 995
             V ++LI MY+KCG + DA++ F   S  + ++WNA++  Y++HG    ALD F  M   
Sbjct: 731  EVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHS 790

Query: 996  KVKMDHITFVAVLTACSHIGLVERGCEFLRCMESDYGVPPRMEHYACAVDLYGRSGRLDE 1055
             V+ +H+T V VL+ACSHIGLV++G  +   M S+YG+ P+ EHY C VD+  R+G L  
Sbjct: 791  NVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSR 850

Query: 1056 AKALIEAMPFKPNAMVWKTFLGACRSCGNVELACQVARHLLEMEPEEHCTYVLLSNMYGD 1115
            AK  I+ MP KP+A+VW+T L AC    N+E+    A HLLE+EPE+  TYVLLSN+Y  
Sbjct: 851  AKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAV 910

Query: 1116 LMRWEEKAQVKRLMKERGVKKTPGWSWIEVKNKVHAFIAEDRSHPSCQQIYFLLEVLMEE 1175
              +W+ +   ++ MKE+GVKK PG SWIEVKN +H+F   D++HP   +I+   + L + 
Sbjct: 911  SKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKR 970

Query: 1176 ITRIEAAADGF 1187
             + I    D F
Sbjct: 971  ASEIGYVQDCF 978

[Close]

BLAST of CmaCh05G003410 vs. TAIR 10
Match: AT2G27610.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 450.7 bits (1158), Expect = 3.8e-126
Identity = 234/658 (35.56%), Postives = 384/658 (58.36%), Query Frame = 0


Query: 516  HSLAIKLGTIADVYTCNNILSGYWKCKEFRSADVLFDEMPLRDSVSWNTMIAGYINSGNL 575
            H   IK G + DV    +++  Y K   F+    +FDEM  R+ V+W T+I+GY  +   
Sbjct: 116  HCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMN 175

Query: 576  ENSWEVLKCMRRFGFDQDEYTFGSMLKGIACAGMLDLGQQIHSMIIKMGFAGNVYAGSAL 635
            +    +   M+  G   + +TF + L  +A  G+   G Q+H++++K G    +   ++L
Sbjct: 176  DEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSL 235

Query: 636  LDMYAKCERLEDAYLTFLNISKQNTVSWNAMIAGYAQTGDRETAFLLLDCMEQEGEKVDD 695
            +++Y KC  +  A + F     ++ V+WN+MI+GYA  G    A  +   M     ++ +
Sbjct: 236  INLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSE 295

Query: 696  GSFAPLLPLLDDAEFCRLTRQVHGKVIKHGLESANTMCNALITSYSECGSLVDAKRVFNC 755
             SFA ++ L  + +  R T Q+H  V+K+G      +  AL+ +YS+C +++DA R+F  
Sbjct: 296  SSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKE 355

Query: 756  SAGVRDLVSWNSLLGAFLVHNQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNKELSNN 815
               V ++VSW +++  FL ++ ++ A  L  +M+  G  P+ ++Y+ I++A        +
Sbjct: 356  IGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL----PVIS 415

Query: 816  GKSLHGMVIKRGLEQSVPISNALISMYLKSDGGSMKEALCIFESLEIKDRVSWNSILTGL 875
               +H  V+K   E+S  +  AL+  Y+K   G ++EA  +F  ++ KD V+W+++L G 
Sbjct: 416  PSEVHAQVVKTNYERSSTVGTALLDAYVKL--GKVEEAAKVFSGIDDKDIVAWSAMLAGY 475

Query: 876  SQMGSSEDAVKSFLHMRSLAMDIDRYSFSAVLKSCSDL-ATFQLGQQFHVLALKYGMDSN 935
            +Q G +E A+K F  +    +  + ++FS++L  C+   A+   G+QFH  A+K  +DS+
Sbjct: 476  AQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSS 535

Query: 936  EFVSSSLIFMYSKCGIMEDAKRSFEGASKSSSITWNALMFGYAQHGQCHVALDLFFLMEE 995
              VSS+L+ MY+K G +E A+  F+   +   ++WN+++ GYAQHGQ   ALD+F  M++
Sbjct: 536  LCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKK 595

Query: 996  KKVKMDHITFVAVLTACSHIGLVERGCEFLRCMESDYGVPPRMEHYACAVDLYGRSGRLD 1055
            +KVKMD +TF+ V  AC+H GLVE G ++   M  D  + P  EH +C VDLY R+G+L+
Sbjct: 596  RKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLE 655

Query: 1056 EAKALIEAMPFKPNAMVWKTFLGACRSCGNVELACQVARHLLEMEPEEHCTYVLLSNMYG 1115
            +A  +IE MP    + +W+T L ACR     EL    A  ++ M+PE+   YVLLSNMY 
Sbjct: 656  KAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYA 715

Query: 1116 DLMRWEEKAQVKRLMKERGVKKTPGWSWIEVKNKVHAFIAEDRSHPSCQQIYFLLEVL 1173
            +   W+E+A+V++LM ER VKK PG+SWIEVKNK ++F+A DRSHP   QIY  LE L
Sbjct: 716  ESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDL 767

[Close]

BLAST of CmaCh05G003410 vs. TAIR 10
Match: AT3G09040.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 430.6 bits (1106), Expect = 4.0e-120
Identity = 251/692 (36.27%), Postives = 382/692 (55.20%), Query Frame = 0


Query: 492  KKWLKSLYSVTGTSFRAL---SNL---LLTHSLAIKLGTIADVYTCNNILSGYWKCKEFR 551
            K  +KS  S  G+   A+   +NL   L+ H+ AIKLG  +++Y  ++++S Y KC++  
Sbjct: 320  KSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKME 379

Query: 552  SADVLFDEMPLRDSVSWNTMIAGYINSGNLENSWEVLKCMRRFGFDQDEYTFGSMLKGIA 611
            +A  +F+ +  ++ V WN MI GY ++G      E+   M+  G++ D++TF S+L   A
Sbjct: 380  AAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCA 439

Query: 612  CAGMLDLGQQIHSMIIKMGFAGNVYAGSALLDMYAKCERLEDAYLTFLNISKQNTVSWNA 671
             +  L++G Q HS+IIK   A N++ G+AL+DMYAKC  LEDA   F  +  ++ V+WN 
Sbjct: 440  ASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNT 499

Query: 672  MIAGYAQTGDRETAFLLLDCMEQEGEKVDDGSFAPLLPLLDDAEFCRLTRQVHGKVIKHG 731
            +I  Y Q  +   AF L   M   G   D    A  L            +QVH   +K G
Sbjct: 500  IIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCG 559

Query: 732  LESANTMCNALITSYSECGSLVDAKRVFNCSAGVRDLVSWNSLLGAFLVHNQEDLAFKLL 791
            L+      ++LI  YS+CG + DA++VF+ S     +VS N+L+  +  +N E+ A  L 
Sbjct: 560  LDRDLHTGSSLIDMYSKCGIIKDARKVFS-SLPEWSVVSMNALIAGYSQNNLEE-AVVLF 619

Query: 792  IDMQEHGFEPDLYSYTSIISACFNKELSNNGKSLHGMVIKRGL-EQSVPISNALISMYLK 851
             +M   G  P   ++ +I+ AC   E    G   HG + KRG   +   +  +L+ MY+ 
Sbjct: 620  QEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMN 679

Query: 852  SDGGSMKEALCIFESLEI-KDRVSWNSILTGLSQMGSSEDAVKSFLHMRSLAMDIDRYSF 911
            S G  M EA  +F  L   K  V W  +++G SQ G  E+A+K +  MR   +  D+ +F
Sbjct: 680  SRG--MTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATF 739

Query: 912  SAVLKSCSDLATFQLGQQFHVLALKYGMDSNEFVSSSLIFMYSKCGIMEDAKRSF-EGAS 971
              VL+ CS L++ + G+  H L      D +E  S++LI MY+KCG M+ + + F E   
Sbjct: 740  VTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRR 799

Query: 972  KSSSITWNALMFGYAQHGQCHVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVERGCE 1031
            +S+ ++WN+L+ GYA++G    AL +F  M +  +  D ITF+ VLTACSH G V  G +
Sbjct: 800  RSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRK 859

Query: 1032 FLRCMESDYGVPPRMEHYACAVDLYGRSGRLDEAKALIEAMPFKPNAMVWKTFLGACRSC 1091
                M   YG+  R++H AC VDL GR G L EA   IEA   KP+A +W + LGACR  
Sbjct: 860  IFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIH 919

Query: 1092 GNVELACQVARHLLEMEPEEHCTYVLLSNMYGDLMRWEEKAQVKRLMKERGVKKTPGWSW 1151
            G+       A  L+E+EP+    YVLLSN+Y     WE+   ++++M++RGVKK PG+SW
Sbjct: 920  GDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSW 979

Query: 1152 IEVKNKVHAFIAEDRSHPSCQQIYFLLEVLME 1175
            I+V+ + H F A D+SH    +I   LE L +
Sbjct: 980  IDVEQRTHIFAAGDKSHSEIGKIEMFLEDLYD 1007

The following BLAST results are available for this feature:

BLAST of CmaCh05G003410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU94	3.9e-229	56.41	Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis th...	[more]
Q9SK49	7.3e-151	58.46	Zinc finger CCCH domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6K687	4.4e-148	58.96	Zinc finger CCCH domain-containing protein 18 OS=Oryza sativa subsp. japonica OX...	[more]
Q9SVP7	2.9e-131	35.62	Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX...	[more]
Q9ZUW3	5.3e-125	35.56	Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmaCh05G003410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25970.1	2.8e-230	56.41	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G24830.1	5.2e-152	58.46	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein	[more]
AT4G13650.1	2.1e-132	35.62	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G27610.1	3.8e-126	35.56	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G09040.1	4.0e-120	36.27	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..30
None	No IPR available	COILS	Coil	Coil	coord: 426..484
None	No IPR available	GENE3D	2.30.30.1190		coord: 106..180 e-value: 5.1E-12 score: 47.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 342..358
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 368..387
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 405..419
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 342..419
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..268
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 515..590
None	No IPR available	PANTHER	PTHR47925:SF56	BNAA02G27730D PROTEIN	coord: 515..590
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 586..1184
None	No IPR available	PANTHER	PTHR47925:SF56	BNAA02G27730D PROTEIN	coord: 586..1184
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 143..169 e-value: 7.7E-4 score: 28.8
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 143..170 score: 13.638232
IPR000467	G-patch domain	SMART	SM00443	G-patch_5	coord: 294..340 e-value: 4.1E-14 score: 62.9
IPR000467	G-patch domain	PFAM	PF01585	G-patch	coord: 296..338 e-value: 2.6E-12 score: 46.4
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 296..342 score: 13.467706
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 661..694 e-value: 0.0012 score: 16.9 coord: 967..1000 e-value: 1.2E-5 score: 23.1 coord: 560..591 e-value: 6.1E-4 score: 17.8 coord: 763..796 e-value: 2.9E-4 score: 18.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 866..893 e-value: 0.02 score: 15.1 coord: 1043..1063 e-value: 0.79 score: 10.1 coord: 732..754 e-value: 0.58 score: 10.5 coord: 661..690 e-value: 3.3E-5 score: 23.8 coord: 529..555 e-value: 0.026 score: 14.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 966..1012 e-value: 1.1E-7 score: 31.9 coord: 558..604 e-value: 8.3E-10 score: 38.7 coord: 761..808 e-value: 3.3E-11 score: 43.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 965..999 score: 9.930995
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 659..693 score: 10.314641
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 761..795 score: 10.665402
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 864..898 score: 8.900633
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 558..592 score: 11.290196
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1017..1166 e-value: 2.0E-14 score: 55.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 457..608 e-value: 6.5E-20 score: 73.2 coord: 818..918 e-value: 6.9E-14 score: 53.6 coord: 919..1016 e-value: 2.3E-17 score: 64.9 coord: 706..817 e-value: 3.7E-17 score: 64.2 coord: 609..705 e-value: 1.5E-15 score: 59.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G003410.1	CmaCh05G003410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding