CmaCh05G003250 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G003250
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionComplex 1 LYR protein
LocationCma_Chr05: 1412134 .. 1412607 (-)
RNA-Seq ExpressionCmaCh05G003250
SyntenyCmaCh05G003250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAATAAATTTGGTTACCACCCTCGAGCTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACATACATGTGGTAAAAAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGTCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCGGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCTCGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTGGAGATCGACCCTGA

mRNA sequence

ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAATAAATTTGGTTACCACCCTCGAGCTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACATACATGTGGTAAAAAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGTCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCGGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCTCGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTGGAGATCGACCCTGA

Coding sequence (CDS)

ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAATAAATTTGGTTACCACCCTCGAGCTCTGCATAATGGTCCAGACACCATTGATGAACTCTTAGACATACATGTGGTAAAAAAAGAAAAGTCCTTTGATGACGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGTCTCTAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCGGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCTCGGAAGGAGTTTGAGGACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGATTGATAAGAAACAAAGTGGTGGAGATCGACCCTGA

Protein sequence

MSMRLVEKCVKLSTHKNFLACNKFGYHPRALHNGPDTIDELLDIHVVKKEKSFDDDEEELITQRRLTSTRRESLSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGGDRP
Homology
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BLAST of CmaCh05G003250 vs. TAIR 10
Match: AT1G76060.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 184.1 bits (466), Expect = 8.6e-47
Identity = 94/129 (72.87%), Postives = 108/129 (83.72%), Query Frame = 0 

Query: 29  RALHNGPDTIDELLDIHVVKKEKS-FDDDEEELITQRRLTSTRRESLSLYRDILRATRFF 88
           R LH GPDT++ELL+ H+ KKEK   D DE E + +RRLTSTRRE+LSLYRDILRATRFF
Sbjct: 29  RFLHEGPDTVEELLERHLAKKEKPIIDHDEAEFLNRRRLTSTRREALSLYRDILRATRFF 88

Query: 89  MWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEI 148
            W DSRG LWRDVLR+NARKEFE ARFETDPE++TRLLIGG DAV SALDKLAEKQR+ I
Sbjct: 89  TWIDSRGNLWRDVLRENARKEFEAARFETDPEVITRLLIGGSDAVSSALDKLAEKQREMI 148

Query: 149 DKKQSGGDR 157
           +K++ G  R
Sbjct: 149 EKQRRGDQR 157

The following BLAST results are available for this feature:
BLAST of CmaCh05G003250 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh05G003250 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G76060.18.6e-4772.87LYR family of Fe/S cluster biogenesis protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 71..131
e-value: 1.9E-11
score: 43.8
NoneNo IPR availablePANTHERPTHR47484COMPLEX 1 PROTEIN CONTAINING PROTEIN, EXPRESSEDcoord: 6..156
NoneNo IPR availableCDDcd20267Complex1_LYR_LYRM7coord: 73..146
e-value: 1.8793E-17
score: 70.2851

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G003250.1CmaCh05G003250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032981 mitochondrial respiratory chain complex I assembly
cellular_component GO:0005759 mitochondrial matrix