CmaCh05G003030 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G003030
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	WEB family protein At1g75720-like
Location	Cma_Chr05: 1311385 .. 1312535 (-)
RNA-Seq Expression	CmaCh05G003030
Synteny	CmaCh05G003030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACTTCGCTTATTTCGAGCAAATGAAGATGGAGAAACGGTCATACCGATCCGTGAAAGAAGCCGTTGAGCTTTACGGTCAAAGGATTTTAGCTCCCGAGCTCTACGCCAATGTTCTTCAAGAGGTATTGCAATAGTTTGTTTGGAACGATTTTCTAAGTACTTAAAAATCCTTTCAATTCTACCTTAAACCTCTCGTTCTAATTCTATTTGGTTGCATTTTTTTTACCTATTAAATTAAGAAAACTACTAAATACAAAATTGTAAAAATCATTTGAAGGTTCTAAATTTATTATGAACCATAATTGAATTTCTTTGACACAAGTTCATGCACAGAAAAAACGATAAAAAAAATATTGGTAATTTATAACTTAGGTTGGTCTAGTAAATAGGGGCATTTTAGTAAAAAGTAGCCTAGACACCCCTAGCTCATAGTCGTCTATCTTTTTGTGCTCGTATCGCAATTAGAGGTTAACCAATGTGGTTAGACGAAAAAACATAAGTTGTCTGTCTCGACATGTACATAAATTACTCAGTATTGTTTCGTTACTAATGTAGCTAGTGGAAGTAGCTTAATAGTGTAGAGCGTAATCTTGCAAAGGATGGTTAAGAGTTACAGTCTCTCATTCTGCTCATGGCTTTGTGATTTAGTGGTAACGAGTAGAGTGCATAAGATTTCGGACCTATCAACCGATTTTATATAATTTATTATCATTTTGATTTTATAGATGGAGAGCGAAGAGAACGAACACGAGAAGAAGCTTCTAAGGATCAAAAGTGTAAGAGATGAATTGGAGATTGCAAAGCAAAACTTGGAGAAAGCCAAAGAAAGGAGTATAGCTATGGCACGATCTTTCTCTTCTCTACAAGAAGAGCTTGAAGAGACAAAGCGAAAGCTCCAAATGCTCAAAGAAAAATCAGATTACGCCATTGAATTTAATGGCGATTCTTTGAAGTTTGACTTCAAAACACAATCACAGAGATTTGAAGAACAAGAAGAAATTGAAGCCTACGGAAAAAGGCATGCAAAAATGAACGGTGAAGGATTTAAGGATAGCCCATCTTTGAAGAACAAGAAGAAGAACATGGCAAGTAAGAAGAAGAAGGCTATATTATTTATAGAAGGATTTTTTTCCAAGAAAAAGAATTGA

mRNA sequence

AAAACTTCGCTTATTTCGAGCAAATGAAGATGGAGAAACGGTCATACCGATCCGTGAAAGAAGCCGTTGAGCTTTACGGTCAAAGGATTTTAGCTCCCGAGCTCTACGCCAATGTTCTTCAAGAGATGGAGAGCGAAGAGAACGAACACGAGAAGAAGCTTCTAAGGATCAAAAGTGTAAGAGATGAATTGGAGATTGCAAAGCAAAACTTGGAGAAAGCCAAAGAAAGGAGTATAGCTATGGCACGATCTTTCTCTTCTCTACAAGAAGAGCTTGAAGAGACAAAGCGAAAGCTCCAAATGCTCAAAGAAAAATCAGATTACGCCATTGAATTTAATGGCGATTCTTTGAAGTTTGACTTCAAAACACAATCACAGAGATTTGAAGAACAAGAAGAAATTGAAGCCTACGGAAAAAGGCATGCAAAAATGAACGGTGAAGGATTTAAGGATAGCCCATCTTTGAAGAACAAGAAGAAGAACATGGCAAGTAAGAAGAAGAAGGCTATATTATTTATAGAAGGATTTTTTTCCAAGAAAAAGAATTGA

Coding sequence (CDS)

ATGAAGATGGAGAAACGGTCATACCGATCCGTGAAAGAAGCCGTTGAGCTTTACGGTCAAAGGATTTTAGCTCCCGAGCTCTACGCCAATGTTCTTCAAGAGATGGAGAGCGAAGAGAACGAACACGAGAAGAAGCTTCTAAGGATCAAAAGTGTAAGAGATGAATTGGAGATTGCAAAGCAAAACTTGGAGAAAGCCAAAGAAAGGAGTATAGCTATGGCACGATCTTTCTCTTCTCTACAAGAAGAGCTTGAAGAGACAAAGCGAAAGCTCCAAATGCTCAAAGAAAAATCAGATTACGCCATTGAATTTAATGGCGATTCTTTGAAGTTTGACTTCAAAACACAATCACAGAGATTTGAAGAACAAGAAGAAATTGAAGCCTACGGAAAAAGGCATGCAAAAATGAACGGTGAAGGATTTAAGGATAGCCCATCTTTGAAGAACAAGAAGAAGAACATGGCAAGTAAGAAGAAGAAGGCTATATTATTTATAGAAGGATTTTTTTCCAAGAAAAAGAATTGA

Protein sequence

MKMEKRSYRSVKEAVELYGQRILAPELYANVLQEMESEENEHEKKLLRIKSVRDELEIAKQNLEKAKERSIAMARSFSSLQEELEETKRKLQMLKEKSDYAIEFNGDSLKFDFKTQSQRFEEQEEIEAYGKRHAKMNGEGFKDSPSLKNKKKNMASKKKKAILFIEGFFSKKKN

Homology

[Close]

BLAST of CmaCh05G003030 vs. ExPASy Swiss-Prot
Match: F4I0N3 (WEB family protein At1g75720 OS=Arabidopsis thaliana OX=3702 GN=At1g75720 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-12
Identity = 68/187 (36.36%), Postives = 102/187 (54.55%), Query Frame = 0


Query: 8   YRSVKEAVELYGQRILAPELYANVLQEMESEENEHEKKLLRIKSVRDELEIAKQNLEKAK 67
           +R+VKEAV L+G+R+LA ++Y+N L+ M      H++K      ++ EL+  + +L++AK
Sbjct: 16  FRTVKEAVALFGERVLASQVYSNHLKVM------HDEKWEDPSGIKIELQETRYDLKRAK 75

Query: 68  ERSIAMARSFSSLQEELEETKRKLQMLKEKSDYAIEFNGDSLKFDFKTQSQRFE------ 127
           E SI M  S S L+EELE TK++LQ L+      ++   +  K D      +FE      
Sbjct: 76  EESIQMRNSLSCLKEELERTKQELQKLR------VDPGVNETKLDETVFKTKFEVLVPRV 135

Query: 128 EQEEIEA------YGKRHAKM------NGEGFKD-SPSLKNKKKNMASKKKKAI--LFIE 174
           + E I +        KR+ K       NG  F +  PS+K K+K    KKKK++  LFI 
Sbjct: 136 DDEPIRSPRLRSMSEKRYVKFANPTGNNGSVFLERHPSMKKKEKKTKDKKKKSLIPLFIG 190

[Close]

BLAST of CmaCh05G003030 vs. ExPASy Swiss-Prot
Match: Q9SD24 (WEB family protein At3g51220 OS=Arabidopsis thaliana OX=3702 GN=At3g51220 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.6e-04
Identity = 56/168 (33.33%), Postives = 82/168 (48.81%), Query Frame = 0


Query: 8   YRSVKEAVELYGQRILAPELYANVLQEMESEENEHEKKLLRIKSVRDELEIAKQNLEKAK 67
           +RSVKEAV L+G+RIL  + Y +   E  S            KS++DEL  AK+NL+KA+
Sbjct: 12  FRSVKEAVTLFGERILLGDNYISKSVERSS-----------CKSIQDELVEAKENLKKAE 71

Query: 68  ERSIAMARSFSSLQEELEETKRKL-QMLKEKSDY-AIEFNGDSLKFDFKTQSQRFEEQEE 127
           E +  +++   SL +ELE TK KL   L+   ++  +E   D LKF  ++     +   E
Sbjct: 72  EENKVLSQLIESLTQELETTKEKLNHSLRNFPEHPQVE---DDLKFIEESTVNEPDNITE 131

Query: 128 I--------EAYGKRHAKMNGEGFKDSPSLK-----NKKKNMASKKKK 161
           I        E YG R  K     F + P L       ++KN    KK+
Sbjct: 132 IKMNRFDRNEVYGDRLEKRRSVKFANPPLLTKVIVGKEEKNQVMVKKQ 165

[Close]

BLAST of CmaCh05G003030 vs. ExPASy Swiss-Prot
Match: O48822 (WEB family protein At2g17940 OS=Arabidopsis thaliana OX=3702 GN=At2g17940 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.4e-04
Identity = 45/158 (28.48%), Postives = 83/158 (52.53%), Query Frame = 0


Query: 5   KRSYRSVKEAVELYGQRILAPELYANVLQEMESEE-NEHEKKLLRIKSVRDELEIAKQNL 64
           K ++ SVKEAV ++G+++LA E+YA  L+E+ ++E N     L R+ S+  ELE  KQ L
Sbjct: 17  KAAFGSVKEAVAMFGEKVLAGEIYATRLREIRTKETNSTPSSLSRLPSLTLELEQTKQTL 76

Query: 65  EKAKERSIAMARSFSSLQEELEETKRKLQML-KEKSDYAIEFNGDSLKFDFKTQSQRFEE 124
            +  + + +++    +L +ELE  K+++Q L + +S        + LKF  + Q+    +
Sbjct: 77  TRTLQLNTSLSNRIKTLTQELELGKKEIQRLSRTRSSRLDNPEIEELKFVEQHQTMTSND 136

Query: 125 QEEIEAYGKRHAKMNGEGFKDSPSLKNKKKNMASKKKK 161
            EE     +   K     F  SP L     ++  ++++
Sbjct: 137 FEEEVVTTEELEKRRLVTFASSPLLTRVMSSVGDEEER 174

[Close]

BLAST of CmaCh05G003030 vs. TAIR 10
Match: AT1G75720.2 (Plant protein of unknown function (DUF827) )

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 68/187 (36.36%), Postives = 102/187 (54.55%), Query Frame = 0


Query: 8   YRSVKEAVELYGQRILAPELYANVLQEMESEENEHEKKLLRIKSVRDELEIAKQNLEKAK 67
           +R+VKEAV L+G+R+LA ++Y+N L+ M      H++K      ++ EL+  + +L++AK
Sbjct: 16  FRTVKEAVALFGERVLASQVYSNHLKVM------HDEKWEDPSGIKIELQETRYDLKRAK 75

Query: 68  ERSIAMARSFSSLQEELEETKRKLQMLKEKSDYAIEFNGDSLKFDFKTQSQRFE------ 127
           E SI M  S S L+EELE TK++LQ L+      ++   +  K D      +FE      
Sbjct: 76  EESIQMRNSLSCLKEELERTKQELQKLR------VDPGVNETKLDETVFKTKFEVLVPRV 135

Query: 128 EQEEIEA------YGKRHAKM------NGEGFKD-SPSLKNKKKNMASKKKKAI--LFIE 174
           + E I +        KR+ K       NG  F +  PS+K K+K    KKKK++  LFI 
Sbjct: 136 DDEPIRSPRLRSMSEKRYVKFANPTGNNGSVFLERHPSMKKKEKKTKDKKKKSLIPLFIG 190

[Close]

BLAST of CmaCh05G003030 vs. TAIR 10
Match: AT1G75720.1 (Plant protein of unknown function (DUF827) )

HSP 1 Score: 71.6 bits (174), Expect = 6.9e-13
Identity = 67/187 (35.83%), Postives = 103/187 (55.08%), Query Frame = 0


Query: 8   YRSVKEAVELYGQRILAPELYANVLQEMESEENEHEKKLLRIKSVRDELEIAKQNLEKAK 67
           +R+VKEAV L+G+R+LA ++Y+N L ++  +   H++K      ++ EL+  + +L++AK
Sbjct: 15  FRTVKEAVALFGERVLASQVYSNHL-KVAMKIQMHDEKWEDPSGIKIELQETRYDLKRAK 74

Query: 68  ERSIAMARSFSSLQEELEETKRKLQMLKEKSDYAIEFNGDSLKFDFKTQSQRFE------ 127
           E SI M  S S L+EELE TK++LQ L+      ++   +  K D      +FE      
Sbjct: 75  EESIQMRNSLSCLKEELERTKQELQKLR------VDPGVNETKLDETVFKTKFEVLVPRV 134

Query: 128 EQEEIEA------YGKRHAKM------NGEGFKD-SPSLKNKKKNMASKKKKAI--LFIE 174
           + E I +        KR+ K       NG  F +  PS+K K+K    KKKK++  LFI 
Sbjct: 135 DDEPIRSPRLRSMSEKRYVKFANPTGNNGSVFLERHPSMKKKEKKTKDKKKKSLIPLFIG 194

[Close]

BLAST of CmaCh05G003030 vs. TAIR 10
Match: AT3G51220.1 (Plant protein of unknown function (DUF827) )

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-05
Identity = 56/168 (33.33%), Postives = 82/168 (48.81%), Query Frame = 0


Query: 8   YRSVKEAVELYGQRILAPELYANVLQEMESEENEHEKKLLRIKSVRDELEIAKQNLEKAK 67
           +RSVKEAV L+G+RIL  + Y +   E  S            KS++DEL  AK+NL+KA+
Sbjct: 12  FRSVKEAVTLFGERILLGDNYISKSVERSS-----------CKSIQDELVEAKENLKKAE 71

Query: 68  ERSIAMARSFSSLQEELEETKRKL-QMLKEKSDY-AIEFNGDSLKFDFKTQSQRFEEQEE 127
           E +  +++   SL +ELE TK KL   L+   ++  +E   D LKF  ++     +   E
Sbjct: 72  EENKVLSQLIESLTQELETTKEKLNHSLRNFPEHPQVE---DDLKFIEESTVNEPDNITE 131

Query: 128 I--------EAYGKRHAKMNGEGFKDSPSLK-----NKKKNMASKKKK 161
           I        E YG R  K     F + P L       ++KN    KK+
Sbjct: 132 IKMNRFDRNEVYGDRLEKRRSVKFANPPLLTKVIVGKEEKNQVMVKKQ 165

[Close]

BLAST of CmaCh05G003030 vs. TAIR 10
Match: AT2G17940.1 (Plant protein of unknown function (DUF827) )

HSP 1 Score: 45.4 bits (106), Expect = 5.3e-05
Identity = 45/158 (28.48%), Postives = 83/158 (52.53%), Query Frame = 0


Query: 5   KRSYRSVKEAVELYGQRILAPELYANVLQEMESEE-NEHEKKLLRIKSVRDELEIAKQNL 64
           K ++ SVKEAV ++G+++LA E+YA  L+E+ ++E N     L R+ S+  ELE  KQ L
Sbjct: 17  KAAFGSVKEAVAMFGEKVLAGEIYATRLREIRTKETNSTPSSLSRLPSLTLELEQTKQTL 76

Query: 65  EKAKERSIAMARSFSSLQEELEETKRKLQML-KEKSDYAIEFNGDSLKFDFKTQSQRFEE 124
            +  + + +++    +L +ELE  K+++Q L + +S        + LKF  + Q+    +
Sbjct: 77  TRTLQLNTSLSNRIKTLTQELELGKKEIQRLSRTRSSRLDNPEIEELKFVEQHQTMTSND 136

Query: 125 QEEIEAYGKRHAKMNGEGFKDSPSLKNKKKNMASKKKK 161
            EE     +   K     F  SP L     ++  ++++
Sbjct: 137 FEEEVVTTEELEKRRLVTFASSPLLTRVMSSVGDEEER 174

The following BLAST results are available for this feature:

BLAST of CmaCh05G003030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I0N3	2.0e-12	36.36	WEB family protein At1g75720 OS=Arabidopsis thaliana OX=3702 GN=At1g75720 PE=3 S...	[more]
Q9SD24	2.6e-04	33.33	WEB family protein At3g51220 OS=Arabidopsis thaliana OX=3702 GN=At3g51220 PE=2 S...	[more]
O48822	7.4e-04	28.48	WEB family protein At2g17940 OS=Arabidopsis thaliana OX=3702 GN=At2g17940 PE=2 S...	[more]

BLAST of CmaCh05G003030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75720.2	1.4e-13	36.36	Plant protein of unknown function (DUF827)	[more]
AT1G75720.1	6.9e-13	35.83	Plant protein of unknown function (DUF827)	[more]
AT3G51220.1	1.8e-05	33.33	Plant protein of unknown function (DUF827)	[more]
AT2G17940.1	5.3e-05	28.48	Plant protein of unknown function (DUF827)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..73
None	No IPR available	COILS	Coil	Coil	coord: 77..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..155
None	No IPR available	PANTHER	PTHR32054	HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED	coord: 6..173
None	No IPR available	PANTHER	PTHR32054:SF9	OSJNBB0050O03.3 PROTEIN	coord: 6..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G003030.1	CmaCh05G003030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009904	chloroplast accumulation movement
biological_process	GO:0009903	chloroplast avoidance movement
cellular_component	GO:0005829	cytosol