CmaCh05G003020 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G003020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr05: 1309549 .. 1309935 (+)
RNA-Seq Expression	CmaCh05G003020
Synteny	CmaCh05G003020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAATCCAGCCGTTTCGATCAGGCCAAAATCAAACGGAGCAAACAGCTTCATCATTAACGTGGAGGATGATCAAGAGGATTACAGAGGAGGAAGCCCCGGCGTAAGCATCTCTCCGGTGAGATTTCTCAGCCGGATCCGCCGGATTCTGATGCGATTCATGTTTTATTTTCCTTCTCGAGGTTCGTCGTCGTCGCCGTCATCGTCAATAATGGCGTCGAAGCAGAGAAATCTGGAGAAATTCGAGCCGCCGAAGACTTCCTGCAGTTCGAATTATTCGTCTTACTCGCATTACAACGAAGCTATTGCCGATTGCATCGAGTTCTTCAACAAGTCGTCGCAGGATCAAATCGGAATCTCCGATGCAAATGCGATGGTATGA

mRNA sequence

ATGGAGAAGAATCCAGCCGTTTCGATCAGGCCAAAATCAAACGGAGCAAACAGCTTCATCATTAACGTGGAGGATGATCAAGAGGATTACAGAGGAGGAAGCCCCGGCGTAAGCATCTCTCCGGTGAGATTTCTCAGCCGGATCCGCCGGATTCTGATGCGATTCATGTTTTATTTTCCTTCTCGAGGTTCGTCGTCGTCGCCGTCATCGTCAATAATGGCGTCGAAGCAGAGAAATCTGGAGAAATTCGAGCCGCCGAAGACTTCCTGCAGTTCGAATTATTCGTCTTACTCGCATTACAACGAAGCTATTGCCGATTGCATCGAGTTCTTCAACAAGTCGTCGCAGGATCAAATCGGAATCTCCGATGCAAATGCGATGGTATGA

Coding sequence (CDS)

ATGGAGAAGAATCCAGCCGTTTCGATCAGGCCAAAATCAAACGGAGCAAACAGCTTCATCATTAACGTGGAGGATGATCAAGAGGATTACAGAGGAGGAAGCCCCGGCGTAAGCATCTCTCCGGTGAGATTTCTCAGCCGGATCCGCCGGATTCTGATGCGATTCATGTTTTATTTTCCTTCTCGAGGTTCGTCGTCGTCGCCGTCATCGTCAATAATGGCGTCGAAGCAGAGAAATCTGGAGAAATTCGAGCCGCCGAAGACTTCCTGCAGTTCGAATTATTCGTCTTACTCGCATTACAACGAAGCTATTGCCGATTGCATCGAGTTCTTCAACAAGTCGTCGCAGGATCAAATCGGAATCTCCGATGCAAATGCGATGGTATGA

Protein sequence

MEKNPAVSIRPKSNGANSFIINVEDDQEDYRGGSPGVSISPVRFLSRIRRILMRFMFYFPSRGSSSSPSSSIMASKQRNLEKFEPPKTSCSSNYSSYSHYNEAIADCIEFFNKSSQDQIGISDANAMV

Homology

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BLAST of CmaCh05G003020 vs. TAIR 10
Match: AT1G75717.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 42  VRFLSRIRRILMRFMFYFPSRGSSSSPSSSIMASKQRNLEKFEPPKTSCSSN-YSSYSHY 101
           ++   ++ +ILMR + +      SSS       S+  + E+FEPPK SCSS+ YSS+ HY
Sbjct: 1   MKLFHKLGKILMRLIDF---TLHSSSRRQKKNNSRSGDGERFEPPKISCSSSYYSSHVHY 60

Query: 102 NEAIADCIEFFNKSS 116
           +EAIADCIEFFNKSS
Sbjct: 61  SEAIADCIEFFNKSS 72

The following BLAST results are available for this feature:

BLAST of CmaCh05G003020 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G003020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75717.1	1.5e-09	49.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..77
None	No IPR available	PANTHER	PTHR35111	F10A5.9-RELATED	coord: 16..120
None	No IPR available	PANTHER	PTHR35111:SF5	F10A5.9	coord: 16..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G003020.1	CmaCh05G003020.1	mRNA