CmaCh05G002970 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G002970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
Location	Cma_Chr05: 1288013 .. 1288758 (+)
RNA-Seq Expression	CmaCh05G002970
Synteny	CmaCh05G002970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGAGCTTGAGAAGCTTCGGGTCCAGTCGGCCCGTAAAACTCACTCGGATAAGCAGTATTATTGAACCAGACAAAACAACAAGCAATAAAACCAAAAACGGAGTGAGATTTTAATAACCTATAATGTGTACGGACAGAAGAGTCGAGTTGATTAATTTAAGAAGCTGCACTGACCATACTTTCAGTTTCAGATGTGTTGAAAACAATTCCCAGAACGTTGTCCACCTAAACCCGAGGCTGTTATAGATGCAATAACAAAACTTCGTAAGAAAATATCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGGATAATCGGTTTTTTACTACCAACCACAAATTTCATGTTGGCCCAAGTACTCATACTGGAAAAAGAGGAGAATCGGTTTTTTACTACCAACCACAAATTTCATGTTGGCCCAAGTACTCATACTGGAAATTACGATCAAGGATTACTCTATCAACCATCATCTACTTCAGAGATCATCCCTCCTGAAACACTGCACAAAATTTAATCCGGTGAATAAGTTAGCCATGTAAAAAATTGGATTTTATAGACAATTCTAACATGTGGTCAAGCTTTGAGCCACGTTTCAAGATAAATTGTTTTAGAAAATATGGACGAGTCACATTGCTGGCATGCTACAGGCAACACGTTTTAGACAAACATCTCCTAAAAAATAATATTTTATTAAATTTTTCATTTTAAAAGGTCAAAAAAATAAATCTTATACGTAA

mRNA sequence

ATGCTTGAGCTTGAGAAGCTTCGGGTCCAGTCGGCCCAACGTTGTCCACCTAAACCCGAGGCTGTTATAGATGCAATAACAAAACTTCGTAAGAAAATATCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGGATAATCGGTTTTTTACTACCAACCACAAATTTCATGTTGGCCCAAGTCAAAAAAATAAATCTTATACGTAA

Coding sequence (CDS)

ATGCTTGAGCTTGAGAAGCTTCGGGTCCAGTCGGCCCAACGTTGTCCACCTAAACCCGAGGCTGTTATAGATGCAATAACAAAACTTCGTAAGAAAATATCTCGAGAAATCTATGAAGATCGAATTAAGTCTCAAGAGGATAATCGGTTTTTTACTACCAACCACAAATTTCATGTTGGCCCAAGTCAAAAAAATAAATCTTATACGTAA

Protein sequence

MLELEKLRVQSAQRCPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSYT

Homology

[Close]

BLAST of CmaCh05G002970 vs. ExPASy Swiss-Prot
Match: Q4VZH1 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhK PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-19
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEAVIDAITKLRKKISREIYEDRIKSQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAVIDAITKLRKKISREIYEDRIKSQEENRCFTTNHKFHVGPSTHTGNY 192

[Close]

BLAST of CmaCh05G002970 vs. ExPASy Swiss-Prot
Match: B0Z4L3 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera argillicola OX=3940 GN=ndhK PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-19
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEA+IDAITKLRKKISREIYEDRI+SQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAIIDAITKLRKKISREIYEDRIRSQEENRCFTTNHKFHVGPSMHTGNY 192

[Close]

BLAST of CmaCh05G002970 vs. ExPASy Swiss-Prot
Match: B0Z4U7 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera biennis OX=3942 GN=ndhK PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-19
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEA+IDAITKLRKKISREIYEDRI+SQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAIIDAITKLRKKISREIYEDRIRSQEENRCFTTNHKFHVGPSMHTGNY 192

[Close]

BLAST of CmaCh05G002970 vs. ExPASy Swiss-Prot
Match: Q9MTP4 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera elata subsp. hookeri OX=85636 GN=ndhK PE=3 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-19
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEA+IDAITKLRKKISREIYEDRI+SQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAIIDAITKLRKKISREIYEDRIRSQEENRCFTTNHKFHVGPSMHTGNY 192

[Close]

BLAST of CmaCh05G002970 vs. ExPASy Swiss-Prot
Match: B0Z531 (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera glazioviana OX=482428 GN=ndhK PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-19
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHVGPSQKNKSY 69
           CPPKPEA+IDAITKLRKKISREIYEDRI+SQE+NR FTTNHKFHVGPS    +Y
Sbjct: 139 CPPKPEAIIDAITKLRKKISREIYEDRIRSQEENRCFTTNHKFHVGPSMHTGNY 192

[Close]

BLAST of CmaCh05G002970 vs. TAIR 10
Match: ATCG00430.1 (photosystem II reaction center protein G )

HSP 1 Score: 77.8 bits (190), Expect = 3.8e-15
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 0


Query: 15  CPPKPEAVIDAITKLRKKISREIYEDRIKSQEDNRFFTTNHKFHV 60
           CPPKPEAVIDAITKLRKKI+REIY+DRI+ Q+ NR FTTNHKF V
Sbjct: 139 CPPKPEAVIDAITKLRKKIAREIYKDRIRPQQGNRCFTTNHKFFV 183

The following BLAST results are available for this feature:

BLAST of CmaCh05G002970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH1	1.1e-19	87.04	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Cucumis sativus OX=36...	[more]
B0Z4L3	2.5e-19	83.33	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera argillicola...	[more]
B0Z4U7	2.5e-19	83.33	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera biennis OX=...	[more]
Q9MTP4	2.5e-19	83.33	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera elata subsp...	[more]
B0Z531	2.5e-19	83.33	NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Oenothera glazioviana...	[more]

BLAST of CmaCh05G002970 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00430.1	3.8e-15	82.22	photosystem II reaction center protein G	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.12280		coord: 12..56 e-value: 7.2E-6 score: 27.2
None	No IPR available	SUPERFAMILY	56770	HydA/Nqo6-like	coord: 15..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G002970.1	CmaCh05G002970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding