CmaCh05G002840 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G002840
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr05: 1213510 .. 1215903 (+)
RNA-Seq Expression	CmaCh05G002840
Synteny	CmaCh05G002840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAATGCATTGGACATCCGCATGGTGGCAAACCGGTATGCCGCAAAATTGCAGCTCTGTTCCCCACAGGATCCGGCTTCATTTTCACTTGCTCGGGCAGTTCATGGCCATATGATTGCTTCTGGGTTCAAGCCTCGTGGCCATTTCCTTAACCGGCTGCTTGAGGTGTATTGCAAATCGTCGAATGTTGTGTATGCACGCCAACTGTTCGACGAAATTCCCAGCCCAGATGCGATAGCAAGGACTACTTTGATTACGGCATATTCTGCTTCAGGGAATCTGAAACTGGGTCGAGAAATATTTAATGGAACTCCATTGCATTTGAGGGATACTGTTTTCTACAATGCAATGATCATTGGTTATTCGCACAACGATGATGGTCTTTCAGCTCTTGAACTGTTCCGTGCTATGAGACGGGATGACTTCCGGCCTGATGACTTTACATTTACAAGCGTTCTTAGTGCTTTGGTGCTTGTTGTTGGCAATGAGCAGCAGTGTGGTCAGATGCATTGTGCAGTGGTGAAATCTGGAATGGGGTGTGTTTCTTCTTCAGTGTTGAACGCTCTTCTCTCTGTTTATGTCAAGTGTGCATCACCATTGGCGATATCATCTTCAGCAATGGTTTCTGCTAGGAAACTGTTCGACGAAATGCCTAAGAGGGATGAGCTAACATGGACGACGATGATTACTGGGTACGTACGGAACGATGATCTAAATGGCGCTCGGGAAGTTTTTGAGTCAATGGCTGAAAAGCTTGGGGCAGCATGGAATGCCATGATATCAGGATATGTACACCATGGTTGTTTTCAGGAAGCATTGATAATGTTTAGGAAAATGCGTTCTCTTGGAATTCAGCACGACGAGGTCACCTATACGACTGTAATCAGTGCTTGTGCCAATGGTGGGTTCTTTCAACAGGGAAAACAGGTGCATGCTTACATTCTAAAAAATGAGCTGAACCCAAATCATAACCTTTTGCTGTCTGTGAATAATGCACTGATTACTTTGTATTGTAAAAATGATATAGTCGATGAGGCACGGAAGGTTTTTGATCAGATGCCACTTAGAAATATTGTTACTTGGAACGCAATCTTATCAGGGTATGTGAATGCAGGGCGTATCGAGGAAGCGAAGTCTTTCTTCGAAGAAATGCTAGAGAAAAACCTTCTTACACTGACTGTGATGATTTCAGGATTGGCACAAAATGGATTTGGAGATGAGGGTTTGAAGCTGTTCAAGCAAATGAGATTGGATGGCTTTGAACCTTGTGATTATGCATATACAGGCGCAATTACAGCATGCTCTGTGCTTGGAGCATTGGAGAATGGTCGCCAGCTCCATGCTCAACTTGTTCATCTGGGCTACAATTCAAACCTTTCTGTTGGCAATGCATTGATATCAATGTATGCAAGATGTGGAGTTCTTGAGGCTGCGGAATCTGTGTTTCTCTCTATGCCTTTTGTAGACTTGGTGTCGTGGAATGCCATGATTGCAGCACTGGGACAGCACGGGTATGGTGCAAAAGCTATTCAACTTTTTGATCAAATGTTGAAGAATGGCGTATTCCCTGATAGAATAACCTTTCTTACTGTTCTTACTGCGTGTTGTCATGCTGGTTTGGTTGAGGAGGGACGCCATTATTTTAGTTTGATGTTTGAAAATTACGGTATCAGTCCTGATGAAGATCATTATGCTCGAATGGTCGATTTGTTTTGTCGAGCTGGGATGTTCTCATATGCCAAGAATATCATCAACACTATGCCTTCTAAACCTGGTGCACCAGTTTGGGAGGCTCTTCTTGCTGGTTGCCGGATTCACAGCAACCTGGATTTAGGAATAGAAGCGGCTGAGCAACTTTTTGAACTAACGCCACAACACGACGGAACCTATGTACTTTTGTCGAACATGTACGCCGATGTCGGGCGGTGGAACGACGTTGCTAAGGTGCGGAAGTTGATGAGGGACCAAGGGGTCCAGAAGGAGCCTGCATGTAGTTGGATCGAGGTCGAGAACGAGGTTCATGTGTTCTTGGTTGATGATGATGTGCACCCTGAGGTGGTATCTGTGTACCGTTACCTGGAGGAGCTGGGGCTTGAAATGAAGAAATTGGGATATGTCCCAGACACTAAATATGTGTTGCACGATATGGAATGTGAACAAAAGGAACATGCCTTGTCTACTCACAGTGAGAAGGTCGCTGTAGCGTTTGGGCTAATGAAGCTCCCTCCAGGAGCCACAGTCAGGGTTTTCAAGAACCTCAGGATCTGTGGGGATTGCCATAATGCATTCAAGTTCATGTCTAAAGTGGTGAAGAGAGAGATAATAGTGAGGGATAGGAAGAGGTTTCACCATTTTAAGAACGGTGAATGTTCGTGCGGTAATTACTGGTAA

mRNA sequence

ATGAGAAATGCATTGGACATCCGCATGGTGGCAAACCGGTATGCCGCAAAATTGCAGCTCTGTTCCCCACAGGATCCGGCTTCATTTTCACTTGCTCGGGCAGTTCATGGCCATATGATTGCTTCTGGGTTCAAGCCTCGTGGCCATTTCCTTAACCGGCTGCTTGAGGTGTATTGCAAATCGTCGAATGTTGTGTATGCACGCCAACTGTTCGACGAAATTCCCAGCCCAGATGCGATAGCAAGGACTACTTTGATTACGGCATATTCTGCTTCAGGGAATCTGAAACTGGGTCGAGAAATATTTAATGGAACTCCATTGCATTTGAGGGATACTGTTTTCTACAATGCAATGATCATTGGTTATTCGCACAACGATGATGGTCTTTCAGCTCTTGAACTGTTCCGTGCTATGAGACGGGATGACTTCCGGCCTGATGACTTTACATTTACAAGCGTTCTTAGTGCTTTGGTGCTTGTTGTTGGCAATGAGCAGCAGTGTGGTCAGATGCATTGTGCAGTGGTGAAATCTGGAATGGGGTGTGTTTCTTCTTCAGTGTTGAACGCTCTTCTCTCTGTTTATGTCAAGTGTGCATCACCATTGGCGATATCATCTTCAGCAATGGTTTCTGCTAGGAAACTGTTCGACGAAATGCCTAAGAGGGATGAGCTAACATGGACGACGATGATTACTGGGTACGTACGGAACGATGATCTAAATGGCGCTCGGGAAGTTTTTGAGTCAATGGCTGAAAAGCTTGGGGCAGCATGGAATGCCATGATATCAGGATATGTACACCATGGTTGTTTTCAGGAAGCATTGATAATGTTTAGGAAAATGCGTTCTCTTGGAATTCAGCACGACGAGGTCACCTATACGACTGTAATCAGTGCTTGTGCCAATGGTGGGTTCTTTCAACAGGGAAAACAGGTGCATGCTTACATTCTAAAAAATGAGCTGAACCCAAATCATAACCTTTTGCTGTCTGTGAATAATGCACTGATTACTTTGTATTGTAAAAATGATATAGTCGATGAGGCACGGAAGGTTTTTGATCAGATGCCACTTAGAAATATTGTTACTTGGAACGCAATCTTATCAGGGTATGTGAATGCAGGGCGTATCGAGGAAGCGAAGTCTTTCTTCGAAGAAATGCTAGAGAAAAACCTTCTTACACTGACTGTGATGATTTCAGGATTGGCACAAAATGGATTTGGAGATGAGGGTTTGAAGCTGTTCAAGCAAATGAGATTGGATGGCTTTGAACCTTGTGATTATGCATATACAGGCGCAATTACAGCATGCTCTGTGCTTGGAGCATTGGAGAATGGTCGCCAGCTCCATGCTCAACTTGTTCATCTGGGCTACAATTCAAACCTTTCTGTTGGCAATGCATTGATATCAATGTATGCAAGATGTGGAGTTCTTGAGGCTGCGGAATCTGTGTTTCTCTCTATGCCTTTTGTAGACTTGGTGTCGTGGAATGCCATGATTGCAGCACTGGGACAGCACGGGTATGGTGCAAAAGCTATTCAACTTTTTGATCAAATGTTGAAGAATGGCGTATTCCCTGATAGAATAACCTTTCTTACTGTTCTTACTGCGTGTTGTCATGCTGGTTTGGTTGAGGAGGGACGCCATTATTTTAGTTTGATGTTTGAAAATTACGGTATCAGTCCTGATGAAGATCATTATGCTCGAATGGTCGATTTGTTTTGTCGAGCTGGGATGTTCTCATATGCCAAGAATATCATCAACACTATGCCTTCTAAACCTGGTGCACCAGTTTGGGAGGCTCTTCTTGCTGGTTGCCGGATTCACAGCAACCTGGATTTAGGAATAGAAGCGGCTGAGCAACTTTTTGAACTAACGCCACAACACGACGGAACCTATGTACTTTTGTCGAACATGTACGCCGATGTCGGGCGGTGGAACGACGTTGCTAAGGTGCGGAAGTTGATGAGGGACCAAGGGGTCCAGAAGGAGCCTGCATGTAGTTGGATCGAGGTCGAGAACGAGGTTCATGTGTTCTTGGTTGATGATGATGTGCACCCTGAGGTGGTATCTGTGTACCGTTACCTGGAGGAGCTGGGGCTTGAAATGAAGAAATTGGGATATGTCCCAGACACTAAATATGTGTTGCACGATATGGAATGTGAACAAAAGGAACATGCCTTGTCTACTCACAGTGAGAAGGTCGCTGTAGCGTTTGGGCTAATGAAGCTCCCTCCAGGAGCCACAGTCAGGGTTTTCAAGAACCTCAGGATCTGTGGGGATTGCCATAATGCATTCAAGTTCATGTCTAAAGTGGTGAAGAGAGAGATAATAGTGAGGGATAGGAAGAGGTTTCACCATTTTAAGAACGGTGAATGTTCGTGCGGTAATTACTGGTAA

Coding sequence (CDS)

ATGAGAAATGCATTGGACATCCGCATGGTGGCAAACCGGTATGCCGCAAAATTGCAGCTCTGTTCCCCACAGGATCCGGCTTCATTTTCACTTGCTCGGGCAGTTCATGGCCATATGATTGCTTCTGGGTTCAAGCCTCGTGGCCATTTCCTTAACCGGCTGCTTGAGGTGTATTGCAAATCGTCGAATGTTGTGTATGCACGCCAACTGTTCGACGAAATTCCCAGCCCAGATGCGATAGCAAGGACTACTTTGATTACGGCATATTCTGCTTCAGGGAATCTGAAACTGGGTCGAGAAATATTTAATGGAACTCCATTGCATTTGAGGGATACTGTTTTCTACAATGCAATGATCATTGGTTATTCGCACAACGATGATGGTCTTTCAGCTCTTGAACTGTTCCGTGCTATGAGACGGGATGACTTCCGGCCTGATGACTTTACATTTACAAGCGTTCTTAGTGCTTTGGTGCTTGTTGTTGGCAATGAGCAGCAGTGTGGTCAGATGCATTGTGCAGTGGTGAAATCTGGAATGGGGTGTGTTTCTTCTTCAGTGTTGAACGCTCTTCTCTCTGTTTATGTCAAGTGTGCATCACCATTGGCGATATCATCTTCAGCAATGGTTTCTGCTAGGAAACTGTTCGACGAAATGCCTAAGAGGGATGAGCTAACATGGACGACGATGATTACTGGGTACGTACGGAACGATGATCTAAATGGCGCTCGGGAAGTTTTTGAGTCAATGGCTGAAAAGCTTGGGGCAGCATGGAATGCCATGATATCAGGATATGTACACCATGGTTGTTTTCAGGAAGCATTGATAATGTTTAGGAAAATGCGTTCTCTTGGAATTCAGCACGACGAGGTCACCTATACGACTGTAATCAGTGCTTGTGCCAATGGTGGGTTCTTTCAACAGGGAAAACAGGTGCATGCTTACATTCTAAAAAATGAGCTGAACCCAAATCATAACCTTTTGCTGTCTGTGAATAATGCACTGATTACTTTGTATTGTAAAAATGATATAGTCGATGAGGCACGGAAGGTTTTTGATCAGATGCCACTTAGAAATATTGTTACTTGGAACGCAATCTTATCAGGGTATGTGAATGCAGGGCGTATCGAGGAAGCGAAGTCTTTCTTCGAAGAAATGCTAGAGAAAAACCTTCTTACACTGACTGTGATGATTTCAGGATTGGCACAAAATGGATTTGGAGATGAGGGTTTGAAGCTGTTCAAGCAAATGAGATTGGATGGCTTTGAACCTTGTGATTATGCATATACAGGCGCAATTACAGCATGCTCTGTGCTTGGAGCATTGGAGAATGGTCGCCAGCTCCATGCTCAACTTGTTCATCTGGGCTACAATTCAAACCTTTCTGTTGGCAATGCATTGATATCAATGTATGCAAGATGTGGAGTTCTTGAGGCTGCGGAATCTGTGTTTCTCTCTATGCCTTTTGTAGACTTGGTGTCGTGGAATGCCATGATTGCAGCACTGGGACAGCACGGGTATGGTGCAAAAGCTATTCAACTTTTTGATCAAATGTTGAAGAATGGCGTATTCCCTGATAGAATAACCTTTCTTACTGTTCTTACTGCGTGTTGTCATGCTGGTTTGGTTGAGGAGGGACGCCATTATTTTAGTTTGATGTTTGAAAATTACGGTATCAGTCCTGATGAAGATCATTATGCTCGAATGGTCGATTTGTTTTGTCGAGCTGGGATGTTCTCATATGCCAAGAATATCATCAACACTATGCCTTCTAAACCTGGTGCACCAGTTTGGGAGGCTCTTCTTGCTGGTTGCCGGATTCACAGCAACCTGGATTTAGGAATAGAAGCGGCTGAGCAACTTTTTGAACTAACGCCACAACACGACGGAACCTATGTACTTTTGTCGAACATGTACGCCGATGTCGGGCGGTGGAACGACGTTGCTAAGGTGCGGAAGTTGATGAGGGACCAAGGGGTCCAGAAGGAGCCTGCATGTAGTTGGATCGAGGTCGAGAACGAGGTTCATGTGTTCTTGGTTGATGATGATGTGCACCCTGAGGTGGTATCTGTGTACCGTTACCTGGAGGAGCTGGGGCTTGAAATGAAGAAATTGGGATATGTCCCAGACACTAAATATGTGTTGCACGATATGGAATGTGAACAAAAGGAACATGCCTTGTCTACTCACAGTGAGAAGGTCGCTGTAGCGTTTGGGCTAATGAAGCTCCCTCCAGGAGCCACAGTCAGGGTTTTCAAGAACCTCAGGATCTGTGGGGATTGCCATAATGCATTCAAGTTCATGTCTAAAGTGGTGAAGAGAGAGATAATAGTGAGGGATAGGAAGAGGTTTCACCATTTTAAGAACGGTGAATGTTCGTGCGGTAATTACTGGTAA

Protein sequence

MRNALDIRMVANRYAAKLQLCSPQDPASFSLARAVHGHMIASGFKPRGHFLNRLLEVYCKSSNVVYARQLFDEIPSPDAIARTTLITAYSASGNLKLGREIFNGTPLHLRDTVFYNAMIIGYSHNDDGLSALELFRAMRRDDFRPDDFTFTSVLSALVLVVGNEQQCGQMHCAVVKSGMGCVSSSVLNALLSVYVKCASPLAISSSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFESMAEKLGAAWNAMISGYVHHGCFQEALIMFRKMRSLGIQHDEVTYTTVISACANGGFFQQGKQVHAYILKNELNPNHNLLLSVNNALITLYCKNDIVDEARKVFDQMPLRNIVTWNAILSGYVNAGRIEEAKSFFEEMLEKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDYAYTGAITACSVLGALENGRQLHAQLVHLGYNSNLSVGNALISMYARCGVLEAAESVFLSMPFVDLVSWNAMIAALGQHGYGAKAIQLFDQMLKNGVFPDRITFLTVLTACCHAGLVEEGRHYFSLMFENYGISPDEDHYARMVDLFCRAGMFSYAKNIINTMPSKPGAPVWEALLAGCRIHSNLDLGIEAAEQLFELTPQHDGTYVLLSNMYADVGRWNDVAKVRKLMRDQGVQKEPACSWIEVENEVHVFLVDDDVHPEVVSVYRYLEELGLEMKKLGYVPDTKYVLHDMECEQKEHALSTHSEKVAVAFGLMKLPPGATVRVFKNLRICGDCHNAFKFMSKVVKREIIVRDRKRFHHFKNGECSCGNYW

Homology

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BLAST of CmaCh05G002840 vs. ExPASy Swiss-Prot
Match: Q9FRI5 (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 1000.0 bits (2584), Expect = 1.6e-290
Identity = 475/793 (59.90%), Postives = 619/793 (78.06%), Query Frame = 0


Query: 7   IRMVANRYAAKLQLCSPQDPASFSLARAVHGHMIASGFKPRGHFLNRLLEVYCKSSNVVY 66
           +R +ANRYAA L+LC P    S  LARAVHG++I  GF+PR H LNRL++VYCKSS + Y
Sbjct: 8   VRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNY 67

Query: 67  ARQLFDEIPSPDAIARTTLITAYSASGNLKLGREIFNGTPLHLRDTVFYNAMIIGYSHND 126
           ARQLFDEI  PD IARTT+++ Y ASG++ L R +F   P+ +RDTV YNAMI G+SHN+
Sbjct: 68  ARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNN 127

Query: 127 DGLSALELFRAMRRDDFRPDDFTFTSVLSALVLVVGNEQQCGQMHCAVVKSGMGCVSSSV 186
           DG SA+ LF  M+ + F+PD+FTF SVL+ L LV  +E+QC Q H A +KSG G + +SV
Sbjct: 128 DGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYI-TSV 187

Query: 187 LNALLSVYVKCASPLAISSSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVF 246
            NAL+SVY KCAS    S S + SARK+FDE+ ++DE +WTTM+TGYV+N   +   E+ 
Sbjct: 188 SNALVSVYSKCAS----SPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELL 247

Query: 247 ESMAEKLG-AAWNAMISGYVHHGCFQEALIMFRKMRSLGIQHDEVTYTTVISACANGGFF 306
           E M + +   A+NAMISGYV+ G +QEAL M R+M S GI+ DE TY +VI ACA  G  
Sbjct: 248 EGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLL 307

Query: 307 QQGKQVHAYILKNELNPNHNLLLSVNNALITLYCKNDIVDEARKVFDQMPLRNIVTWNAI 366
           Q GKQVHAY+L+ E     +     +N+L++LY K    DEAR +F++MP +++V+WNA+
Sbjct: 308 QLGKQVHAYVLRRE-----DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNAL 367

Query: 367 LSGYVNAGRIEEAKSFFEEMLEKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCD 426
           LSGYV++G I EAK  F+EM EKN+L+  +MISGLA+NGFG+EGLKLF  M+ +GFEPCD
Sbjct: 368 LSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCD 427

Query: 427 YAYTGAITACSVLGALENGRQLHAQLVHLGYNSNLSVGNALISMYARCGVLEAAESVFLS 486
           YA++GAI +C+VLGA  NG+Q HAQL+ +G++S+LS GNALI+MYA+CGV+E A  VF +
Sbjct: 428 YAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRT 487

Query: 487 MPFVDLVSWNAMIAALGQHGYGAKAIQLFDQMLKNGVFPDRITFLTVLTACCHAGLVEEG 546
           MP +D VSWNA+IAALGQHG+GA+A+ ++++MLK G+ PDRIT LTVLTAC HAGLV++G
Sbjct: 488 MPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQG 547

Query: 547 RHYFSLMFENYGISPDEDHYARMVDLFCRAGMFSYAKNIINTMPSKPGAPVWEALLAGCR 606
           R YF  M   Y I P  DHYAR++DL CR+G FS A+++I ++P KP A +WEALL+GCR
Sbjct: 548 RKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCR 607

Query: 607 IHSNLDLGIEAAEQLFELTPQHDGTYVLLSNMYADVGRWNDVAKVRKLMRDQGVQKEPAC 666
           +H N++LGI AA++LF L P+HDGTY+LLSNM+A  G+W +VA+VRKLMRD+GV+KE AC
Sbjct: 608 VHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVAC 667

Query: 667 SWIEVENEVHVFLVDDDVHPEVVSVYRYLEELGLEMKKLGYVPDTKYVLHDMECE-QKEH 726
           SWIE+E +VH FLVDD  HPE  +VY YL++LG EM++LGYVPDT +VLHD+E +  KE 
Sbjct: 668 SWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKED 727

Query: 727 ALSTHSEKVAVAFGLMKLPPGATVRVFKNLRICGDCHNAFKFMSKVVKREIIVRDRKRFH 786
            L+THSEK+AVAFGLMKLPPG T+R+FKNLR CGDCHN F+F+S VV+R+II+RDRKRFH
Sbjct: 728 MLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFH 787

Query: 787 HFKNGECSCGNYW 798
           HF+NGECSCGN+W
Sbjct: 788 HFRNGECSCGNFW 790

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BLAST of CmaCh05G002840 vs. ExPASy Swiss-Prot
Match: Q9SHZ8 (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 1.2e-162
Identity = 313/770 (40.65%), Postives = 460/770 (59.74%), Query Frame = 0


Query: 32  ARAVHGHMIASGFKPRGHFLNRLLEVYCKSSNVVYARQLFDEIPSPDAIARTTLITAYSA 91
           A+ VH  +I SG     + +N L+ VY K+   ++AR+LFDE+P   A +  T+++AYS 
Sbjct: 33  AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK 92

Query: 92  SGNLKLGREIFNGTPLHLRDTVFYNAMIIGYSHNDDGLSALELFRAMRRDDFRPDDFTFT 151
            G++    E F+  P   RD+V +  MI+GY +      A+ +   M ++   P  FT T
Sbjct: 93  RGDMDSTCEFFDQLP--QRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLT 152

Query: 152 SVLSALVLVVGNEQQCGQMHCAVVKSGMGCVSSSVLNALLSVYVKCASPLAISSSAMVSA 211
           +VL A V      +   ++H  +VK G+   + SV N+LL++Y KC  P+         A
Sbjct: 153 NVL-ASVAATRCMETGKKVHSFIVKLGLR-GNVSVSNSLLNMYAKCGDPM--------MA 212

Query: 212 RKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFESMAEKLGAAWNAMISGYVHHGCFQ 271
           + +FD M  RD  +W  MI  +++   ++ A   FE MAE+    WN+MISG+   G   
Sbjct: 213 KFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDL 272

Query: 272 EALIMFRKM-RSLGIQHDEVTYTTVISACANGGFFQQGKQVHAYILKNELNPNHNLLLSV 331
            AL +F KM R   +  D  T  +V+SACAN      GKQ+H++I+    + +  +L   
Sbjct: 273 RALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVL--- 332

Query: 332 NNALITLYCKNDIVDEARKVFDQMPLRN--IVTWNAILSGYVNAGRIEEAKSFFEEMLEK 391
            NALI++Y +   V+ AR++ +Q   ++  I  + A+L GY+  G + +AK+ F  + ++
Sbjct: 333 -NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDR 392

Query: 392 NLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDYAYTGAITACSVLGALENGRQLH 451
           +++  T MI G  Q+G   E + LF+ M   G  P  Y     ++  S L +L +G+Q+H
Sbjct: 393 DVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIH 452

Query: 452 AQLVHLGYNSNLSVGNALISMYARCGVLEAAESVF-LSMPFVDLVSWNAMIAALGQHGYG 511
              V  G   ++SV NALI+MYA+ G + +A   F L     D VSW +MI AL QHG+ 
Sbjct: 453 GSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHA 512

Query: 512 AKAIQLFDQMLKNGVFPDRITFLTVLTACCHAGLVEEGRHYFSLMFENYGISPDEDHYAR 571
            +A++LF+ ML  G+ PD IT++ V +AC HAGLV +GR YF +M +   I P   HYA 
Sbjct: 513 EEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYAC 572

Query: 572 MVDLFCRAGMFSYAKNIINTMPSKPGAPVWEALLAGCRIHSNLDLGIEAAEQLFELTPQH 631
           MVDLF RAG+   A+  I  MP +P    W +LL+ CR+H N+DLG  AAE+L  L P++
Sbjct: 573 MVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPEN 632

Query: 632 DGTYVLLSNMYADVGRWNDVAKVRKLMRDQGVQKEPACSWIEVENEVHVFLVDDDVHPEV 691
            G Y  L+N+Y+  G+W + AK+RK M+D  V+KE   SWIEV+++VHVF V+D  HPE 
Sbjct: 633 SGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEK 692

Query: 692 VSVYRYLEELGLEMKKLGYVPDTKYVLHDMECEQKEHALSTHSEKVAVAFGLMKLPPGAT 751
             +Y  ++++  E+KK+GYVPDT  VLHD+E E KE  L  HSEK+A+AFGL+  P   T
Sbjct: 693 NEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTT 752

Query: 752 VRVFKNLRICGDCHNAFKFMSKVVKREIIVRDRKRFHHFKNGECSCGNYW 798
           +R+ KNLR+C DCH A KF+SK+V REIIVRD  RFHHFK+G CSC +YW
Sbjct: 753 LRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786

[Close]

BLAST of CmaCh05G002840 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 2.2e-159
Identity = 290/746 (38.87%), Postives = 434/746 (58.18%), Query Frame = 0


Query: 52  NRLLEVYCKSSNVVYARQLFDEIPSPDAIARTTLITAYSASGNLKLGREIFNGTPLHLRD 111
           N ++  Y ++     AR+LFDE+P  D ++   +I  Y  + NL   RE+F   P   RD
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMP--ERD 158

Query: 112 TVFYNAMIIGYSHNDDGLSALELFRAMRRDDFRPDDFTFTSVLSALVLVVGNEQQCGQMH 171
              +N M+ GY+ N     A  +F  M       +D ++ ++LSA V     E+      
Sbjct: 159 VCSWNTMLSGYAQNGCVDDARSVFDRMP----EKNDVSWNALLSAYVQNSKMEEA----- 218

Query: 172 CAVVKSGMGCVSSSVLNALLSVYVKCASPLAISSSAMVSARKLFDEMPKRDELTWTTMIT 231
           C + KS       S  N LL  +VK           +V AR+ FD M  RD ++W T+IT
Sbjct: 219 CMLFKSRENWALVS-WNCLLGGFVK--------KKKIVEARQFFDSMNVRDVVSWNTIIT 278

Query: 232 GYVRNDDLNGAREVFESMAEKLGAAWNAMISGYVHHGCFQEALIMFRKMRSLGIQHDEVT 291
           GY ++  ++ AR++F+    +    W AM+SGY+ +   +EA  +F KM     + +EV+
Sbjct: 279 GYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP----ERNEVS 338

Query: 292 YTTVISACANGGFFQQGKQVHAYILKNELNPNHNLLLSVNNALITLYCKNDIVDEARKVF 351
           +                                       NA++  Y + + ++ A+++F
Sbjct: 339 W---------------------------------------NAMLAGYVQGERMEMAKELF 398

Query: 352 DQMPLRNIVTWNAILSGYVNAGRIEEAKSFFEEMLEKNLLTLTVMISGLAQNGFGDEGLK 411
           D MP RN+ TWN +++GY   G+I EAK+ F++M +++ ++   MI+G +Q+G   E L+
Sbjct: 399 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALR 458

Query: 412 LFKQMRLDGFEPCDYAYTGAITACSVLGALENGRQLHAQLVHLGYNSNLSVGNALISMYA 471
           LF QM  +G      +++ A++ C+ + ALE G+QLH +LV  GY +   VGNAL+ MY 
Sbjct: 459 LFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 518

Query: 472 RCGVLEAAESVFLSMPFVDLVSWNAMIAALGQHGYGAKAIQLFDQMLKNGVFPDRITFLT 531
           +CG +E A  +F  M   D+VSWN MIA   +HG+G  A++ F+ M + G+ PD  T + 
Sbjct: 519 KCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVA 578

Query: 532 VLTACCHAGLVEEGRHYFSLMFENYGISPDEDHYARMVDLFCRAGMFSYAKNIINTMPSK 591
           VL+AC H GLV++GR YF  M ++YG+ P+  HYA MVDL  RAG+   A N++  MP +
Sbjct: 579 VLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE 638

Query: 592 PGAPVWEALLAGCRIHSNLDLGIEAAEQLFELTPQHDGTYVLLSNMYADVGRWNDVAKVR 651
           P A +W  LL   R+H N +L   AA+++F + P++ G YVLLSN+YA  GRW DV K+R
Sbjct: 639 PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLR 698

Query: 652 KLMRDQGVQKEPACSWIEVENEVHVFLVDDDVHPEVVSVYRYLEELGLEMKKLGYVPDTK 711
             MRD+GV+K P  SWIE++N+ H F V D+ HPE   ++ +LEEL L MKK GYV  T 
Sbjct: 699 VRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTS 758

Query: 712 YVLHDMECEQKEHALSTHSEKVAVAFGLMKLPPGATVRVFKNLRICGDCHNAFKFMSKVV 771
            VLHD+E E+KE  +  HSE++AVA+G+M++  G  +RV KNLR+C DCHNA K+M+++ 
Sbjct: 759 VVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARIT 781

Query: 772 KREIIVRDRKRFHHFKNGECSCGNYW 798
            R II+RD  RFHHFK+G CSCG+YW
Sbjct: 819 GRLIILRDNNRFHHFKDGSCSCGDYW 781

[Close]

BLAST of CmaCh05G002840 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 4.1e-142
Identity = 277/771 (35.93%), Postives = 423/771 (54.86%), Query Frame = 0


Query: 33  RAVHGHMIASGFKPRGHFLNRLLEVYCKS---SNVVYARQLFDEIPSPDAIARTTLITAY 92
           R +H  MI  G     + L++L+E    S     + YA  +F  I  P+ +         
Sbjct: 50  RIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLL--------- 109

Query: 93  SASGNLKLGREIFNGTPLHLRDTVFYNAMIIGYSHNDDGLSALELFRAMRRDDFRPDDFT 152
                                    +N M  G++ + D +SAL+L+  M      P+ +T
Sbjct: 110 ------------------------IWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYT 169

Query: 153 FTSVLSALVLVVGNEQQCGQMHCAVVKSGMGC-VSSSVLNALLSVYVKCASPLAISSSAM 212
           F  VL +       ++   Q+H  V+K  +GC +   V  +L+S+YV+        +  +
Sbjct: 170 FPFVLKSCAKSKAFKEG-QQIHGHVLK--LGCDLDLYVHTSLISMYVQ--------NGRL 229

Query: 213 VSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFESMAEKLGAAWNAMISGYVHHG 272
             A K+FD+ P RD +++T +I GY     +  A+++F+ +  K   +WNAMISGY   G
Sbjct: 230 EDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETG 289

Query: 273 CFQEALIMFRKMRSLGIQHDEVTYTTVISACANGGFFQQGKQVHAYILKNELNPNHNLLL 332
            ++EAL +F+ M    ++ DE T  TV+SACA  G  + G+QVH +I  +    N    L
Sbjct: 290 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSN----L 349

Query: 333 SVNNALITLYCKNDIVDEARKVFDQMPLRNIVTWNAILSGYVNAGRIEEAKSFFEEMLEK 392
            + NALI LY K   ++ A  +F+++P +++++WN ++ GY +    +EA   F+EML  
Sbjct: 350 KIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR- 409

Query: 393 NLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDYAYTGAITACSVLGALENGRQLH 452
                                          G  P D      + AC+ LGA++ GR +H
Sbjct: 410 ------------------------------SGETPNDVTMLSILPACAHLGAIDIGRWIH 469

Query: 453 AQLVH--LGYNSNLSVGNALISMYARCGVLEAAESVFLSMPFVDLVSWNAMIAALGQHGY 512
             +     G  +  S+  +LI MYA+CG +EAA  VF S+    L SWNAMI     HG 
Sbjct: 470 VYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGR 529

Query: 513 GAKAIQLFDQMLKNGVFPDRITFLTVLTACCHAGLVEEGRHYFSLMFENYGISPDEDHYA 572
              +  LF +M K G+ PD ITF+ +L+AC H+G+++ GRH F  M ++Y ++P  +HY 
Sbjct: 530 ADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYG 589

Query: 573 RMVDLFCRAGMFSYAKNIINTMPSKPGAPVWEALLAGCRIHSNLDLGIEAAEQLFELTPQ 632
            M+DL   +G+F  A+ +IN M  +P   +W +LL  C++H N++LG   AE L ++ P+
Sbjct: 590 CMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPE 649

Query: 633 HDGTYVLLSNMYADVGRWNDVAKVRKLMRDQGVQKEPACSWIEVENEVHVFLVDDDVHPE 692
           + G+YVLLSN+YA  GRWN+VAK R L+ D+G++K P CS IE+++ VH F++ D  HP 
Sbjct: 650 NPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPR 709

Query: 693 VVSVYRYLEELGLEMKKLGYVPDTKYVLHDMECEQKEHALSTHSEKVAVAFGLMKLPPGA 752
              +Y  LEE+ + ++K G+VPDT  VL +ME E KE AL  HSEK+A+AFGL+   PG 
Sbjct: 710 NREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGT 741

Query: 753 TVRVFKNLRICGDCHNAFKFMSKVVKREIIVRDRKRFHHFKNGECSCGNYW 798
            + + KNLR+C +CH A K +SK+ KREII RDR RFHHF++G CSC +YW
Sbjct: 770 KLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741

[Close]

BLAST of CmaCh05G002840 vs. ExPASy Swiss-Prot
Match: Q9CAA8 (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 9.2e-142
Identity = 278/793 (35.06%), Postives = 434/793 (54.73%), Query Frame = 0


Query: 9   MVANRYAAKLQLCSPQDPASFS-LARAVHGHMIASGFKPRGHFLNRLLEVYCKSSNVVYA 68
           M +N Y+ +++ C      + S   + +HG++I +   P     N ++  Y    +  YA
Sbjct: 1   MASNYYSVQIKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYA 60

Query: 69  RQLFDEIPSPDAIARTTLITAYSASGNLKLGREIFNGTPLHLRDTVFYNAMIIGYSHNDD 128
           R++FD IP P+  +   L+ AYS +G +      F   P   RD V +N +I GYS +  
Sbjct: 61  RRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLP--DRDGVTWNVLIEGYSLSGL 120

Query: 129 GLSALELFRAMRRDDFRPDDFTFTSVLSALVLVVGNEQQCGQMHCAVVKSGMGCVSSSVL 188
             +A++ +  M RD        F++ L+ + L+   +      H ++ K     +   V+
Sbjct: 121 VGAAVKAYNTMMRD--------FSANLTRVTLMTMLKLSSSNGHVSLGKQ----IHGQVI 180

Query: 189 NALLSVYVKCASPLA---ISSSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGARE 248
                 Y+   SPL     +   +  A+K+F  +  R+ + + +++ G +    +  A +
Sbjct: 181 KLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQ 240

Query: 249 VFESMAEKLGAAWNAMISGYVHHGCFQEALIMFRKMRSLGIQHDEVTYTTVISACANGGF 308
           +F  M EK   +W AMI G   +G  +EA+  FR+M+  G++ D+  + +V+ AC   G 
Sbjct: 241 LFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGA 300

Query: 309 FQQGKQVHAYILKNELNPNHNLLLSVNNALITLYCKNDIVDEARKVFDQMPLRNIVTWNA 368
             +GKQ+HA I++     +    + V +ALI +YCK   +  A+ VFD+M  +N+V+W A
Sbjct: 301 INEGKQIHACIIRTNFQDH----IYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTA 360

Query: 369 ILSGYVNAGRIEEAKSFFEEMLEKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPC 428
           ++ GY   GR EEA                               +K+F  M+  G +P 
Sbjct: 361 MVVGYGQTGRAEEA-------------------------------VKIFLDMQRSGIDPD 420

Query: 429 DYAYTGAITACSVLGALENGRQLHAQLVHLGYNSNLSVGNALISMYARCGVLEAAESVFL 488
            Y    AI+AC+ + +LE G Q H + +  G    ++V N+L+++Y +CG ++ +  +F 
Sbjct: 421 HYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFN 480

Query: 489 SMPFVDLVSWNAMIAALGQHGYGAKAIQLFDQMLKNGVFPDRITFLTVLTACCHAGLVEE 548
            M   D VSW AM++A  Q G   + IQLFD+M+++G+ PD +T   V++AC  AGLVE+
Sbjct: 481 EMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEK 540

Query: 549 GRHYFSLMFENYGISPDEDHYARMVDLFCRAGMFSYAKNIINTMPSKPGAPVWEALLAGC 608
           G+ YF LM   YGI P   HY+ M+DLF R+G    A   IN MP  P A  W  LL+ C
Sbjct: 541 GQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSAC 600

Query: 609 RIHSNLDLGIEAAEQLFELTPQHDGTYVLLSNMYADVGRWNDVAKVRKLMRDQGVQKEPA 668
           R   NL++G  AAE L EL P H   Y LLS++YA  G+W+ VA++R+ MR++ V+KEP 
Sbjct: 601 RNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPG 660

Query: 669 CSWIEVENEVHVFLVDDDVHPEVVSVYRYLEELGLEMKKLGYVPDTKYVLHDMECEQKEH 728
            SWI+ + ++H F  DD+  P +  +Y  LEEL  ++   GY PDT +V HD+E   K  
Sbjct: 661 QSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVK 720

Query: 729 ALSTHSEKVAVAFGLMKLPPGATVRVFKNLRICGDCHNAFKFMSKVVKREIIVRDRKRFH 788
            L+ HSE++A+AFGL+ +P G  +RV KNLR+C DCHNA K +S V  REI+VRD  RFH
Sbjct: 721 MLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFH 743

Query: 789 HFKNGECSCGNYW 798
            FK+G CSCG++W
Sbjct: 781 RFKDGTCSCGDFW 743

[Close]

BLAST of CmaCh05G002840 vs. TAIR 10
Match: AT1G25360.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 1000.0 bits (2584), Expect = 1.1e-291
Identity = 475/793 (59.90%), Postives = 619/793 (78.06%), Query Frame = 0


Query: 7   IRMVANRYAAKLQLCSPQDPASFSLARAVHGHMIASGFKPRGHFLNRLLEVYCKSSNVVY 66
           +R +ANRYAA L+LC P    S  LARAVHG++I  GF+PR H LNRL++VYCKSS + Y
Sbjct: 8   VRAIANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNY 67

Query: 67  ARQLFDEIPSPDAIARTTLITAYSASGNLKLGREIFNGTPLHLRDTVFYNAMIIGYSHND 126
           ARQLFDEI  PD IARTT+++ Y ASG++ L R +F   P+ +RDTV YNAMI G+SHN+
Sbjct: 68  ARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNN 127

Query: 127 DGLSALELFRAMRRDDFRPDDFTFTSVLSALVLVVGNEQQCGQMHCAVVKSGMGCVSSSV 186
           DG SA+ LF  M+ + F+PD+FTF SVL+ L LV  +E+QC Q H A +KSG G + +SV
Sbjct: 128 DGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYI-TSV 187

Query: 187 LNALLSVYVKCASPLAISSSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVF 246
            NAL+SVY KCAS    S S + SARK+FDE+ ++DE +WTTM+TGYV+N   +   E+ 
Sbjct: 188 SNALVSVYSKCAS----SPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELL 247

Query: 247 ESMAEKLG-AAWNAMISGYVHHGCFQEALIMFRKMRSLGIQHDEVTYTTVISACANGGFF 306
           E M + +   A+NAMISGYV+ G +QEAL M R+M S GI+ DE TY +VI ACA  G  
Sbjct: 248 EGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLL 307

Query: 307 QQGKQVHAYILKNELNPNHNLLLSVNNALITLYCKNDIVDEARKVFDQMPLRNIVTWNAI 366
           Q GKQVHAY+L+ E     +     +N+L++LY K    DEAR +F++MP +++V+WNA+
Sbjct: 308 QLGKQVHAYVLRRE-----DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNAL 367

Query: 367 LSGYVNAGRIEEAKSFFEEMLEKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCD 426
           LSGYV++G I EAK  F+EM EKN+L+  +MISGLA+NGFG+EGLKLF  M+ +GFEPCD
Sbjct: 368 LSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCD 427

Query: 427 YAYTGAITACSVLGALENGRQLHAQLVHLGYNSNLSVGNALISMYARCGVLEAAESVFLS 486
           YA++GAI +C+VLGA  NG+Q HAQL+ +G++S+LS GNALI+MYA+CGV+E A  VF +
Sbjct: 428 YAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRT 487

Query: 487 MPFVDLVSWNAMIAALGQHGYGAKAIQLFDQMLKNGVFPDRITFLTVLTACCHAGLVEEG 546
           MP +D VSWNA+IAALGQHG+GA+A+ ++++MLK G+ PDRIT LTVLTAC HAGLV++G
Sbjct: 488 MPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQG 547

Query: 547 RHYFSLMFENYGISPDEDHYARMVDLFCRAGMFSYAKNIINTMPSKPGAPVWEALLAGCR 606
           R YF  M   Y I P  DHYAR++DL CR+G FS A+++I ++P KP A +WEALL+GCR
Sbjct: 548 RKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCR 607

Query: 607 IHSNLDLGIEAAEQLFELTPQHDGTYVLLSNMYADVGRWNDVAKVRKLMRDQGVQKEPAC 666
           +H N++LGI AA++LF L P+HDGTY+LLSNM+A  G+W +VA+VRKLMRD+GV+KE AC
Sbjct: 608 VHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVAC 667

Query: 667 SWIEVENEVHVFLVDDDVHPEVVSVYRYLEELGLEMKKLGYVPDTKYVLHDMECE-QKEH 726
           SWIE+E +VH FLVDD  HPE  +VY YL++LG EM++LGYVPDT +VLHD+E +  KE 
Sbjct: 668 SWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKED 727

Query: 727 ALSTHSEKVAVAFGLMKLPPGATVRVFKNLRICGDCHNAFKFMSKVVKREIIVRDRKRFH 786
            L+THSEK+AVAFGLMKLPPG T+R+FKNLR CGDCHN F+F+S VV+R+II+RDRKRFH
Sbjct: 728 MLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFH 787

Query: 787 HFKNGECSCGNYW 798
           HF+NGECSCGN+W
Sbjct: 788 HFRNGECSCGNFW 790

[Close]

BLAST of CmaCh05G002840 vs. TAIR 10
Match: AT2G22070.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 575.1 bits (1481), Expect = 8.8e-164
Identity = 313/770 (40.65%), Postives = 460/770 (59.74%), Query Frame = 0


Query: 32  ARAVHGHMIASGFKPRGHFLNRLLEVYCKSSNVVYARQLFDEIPSPDAIARTTLITAYSA 91
           A+ VH  +I SG     + +N L+ VY K+   ++AR+LFDE+P   A +  T+++AYS 
Sbjct: 33  AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK 92

Query: 92  SGNLKLGREIFNGTPLHLRDTVFYNAMIIGYSHNDDGLSALELFRAMRRDDFRPDDFTFT 151
            G++    E F+  P   RD+V +  MI+GY +      A+ +   M ++   P  FT T
Sbjct: 93  RGDMDSTCEFFDQLP--QRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLT 152

Query: 152 SVLSALVLVVGNEQQCGQMHCAVVKSGMGCVSSSVLNALLSVYVKCASPLAISSSAMVSA 211
           +VL A V      +   ++H  +VK G+   + SV N+LL++Y KC  P+         A
Sbjct: 153 NVL-ASVAATRCMETGKKVHSFIVKLGLR-GNVSVSNSLLNMYAKCGDPM--------MA 212

Query: 212 RKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFESMAEKLGAAWNAMISGYVHHGCFQ 271
           + +FD M  RD  +W  MI  +++   ++ A   FE MAE+    WN+MISG+   G   
Sbjct: 213 KFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDL 272

Query: 272 EALIMFRKM-RSLGIQHDEVTYTTVISACANGGFFQQGKQVHAYILKNELNPNHNLLLSV 331
            AL +F KM R   +  D  T  +V+SACAN      GKQ+H++I+    + +  +L   
Sbjct: 273 RALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVL--- 332

Query: 332 NNALITLYCKNDIVDEARKVFDQMPLRN--IVTWNAILSGYVNAGRIEEAKSFFEEMLEK 391
            NALI++Y +   V+ AR++ +Q   ++  I  + A+L GY+  G + +AK+ F  + ++
Sbjct: 333 -NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDR 392

Query: 392 NLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDYAYTGAITACSVLGALENGRQLH 451
           +++  T MI G  Q+G   E + LF+ M   G  P  Y     ++  S L +L +G+Q+H
Sbjct: 393 DVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIH 452

Query: 452 AQLVHLGYNSNLSVGNALISMYARCGVLEAAESVF-LSMPFVDLVSWNAMIAALGQHGYG 511
              V  G   ++SV NALI+MYA+ G + +A   F L     D VSW +MI AL QHG+ 
Sbjct: 453 GSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHA 512

Query: 512 AKAIQLFDQMLKNGVFPDRITFLTVLTACCHAGLVEEGRHYFSLMFENYGISPDEDHYAR 571
            +A++LF+ ML  G+ PD IT++ V +AC HAGLV +GR YF +M +   I P   HYA 
Sbjct: 513 EEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYAC 572

Query: 572 MVDLFCRAGMFSYAKNIINTMPSKPGAPVWEALLAGCRIHSNLDLGIEAAEQLFELTPQH 631
           MVDLF RAG+   A+  I  MP +P    W +LL+ CR+H N+DLG  AAE+L  L P++
Sbjct: 573 MVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPEN 632

Query: 632 DGTYVLLSNMYADVGRWNDVAKVRKLMRDQGVQKEPACSWIEVENEVHVFLVDDDVHPEV 691
            G Y  L+N+Y+  G+W + AK+RK M+D  V+KE   SWIEV+++VHVF V+D  HPE 
Sbjct: 633 SGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEK 692

Query: 692 VSVYRYLEELGLEMKKLGYVPDTKYVLHDMECEQKEHALSTHSEKVAVAFGLMKLPPGAT 751
             +Y  ++++  E+KK+GYVPDT  VLHD+E E KE  L  HSEK+A+AFGL+  P   T
Sbjct: 693 NEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTT 752

Query: 752 VRVFKNLRICGDCHNAFKFMSKVVKREIIVRDRKRFHHFKNGECSCGNYW 798
           +R+ KNLR+C DCH A KF+SK+V REIIVRD  RFHHFK+G CSC +YW
Sbjct: 753 LRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786

[Close]

BLAST of CmaCh05G002840 vs. TAIR 10
Match: AT4G02750.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 564.3 bits (1453), Expect = 1.5e-160
Identity = 290/746 (38.87%), Postives = 434/746 (58.18%), Query Frame = 0


Query: 52  NRLLEVYCKSSNVVYARQLFDEIPSPDAIARTTLITAYSASGNLKLGREIFNGTPLHLRD 111
           N ++  Y ++     AR+LFDE+P  D ++   +I  Y  + NL   RE+F   P   RD
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMP--ERD 158

Query: 112 TVFYNAMIIGYSHNDDGLSALELFRAMRRDDFRPDDFTFTSVLSALVLVVGNEQQCGQMH 171
              +N M+ GY+ N     A  +F  M       +D ++ ++LSA V     E+      
Sbjct: 159 VCSWNTMLSGYAQNGCVDDARSVFDRMP----EKNDVSWNALLSAYVQNSKMEEA----- 218

Query: 172 CAVVKSGMGCVSSSVLNALLSVYVKCASPLAISSSAMVSARKLFDEMPKRDELTWTTMIT 231
           C + KS       S  N LL  +VK           +V AR+ FD M  RD ++W T+IT
Sbjct: 219 CMLFKSRENWALVS-WNCLLGGFVK--------KKKIVEARQFFDSMNVRDVVSWNTIIT 278

Query: 232 GYVRNDDLNGAREVFESMAEKLGAAWNAMISGYVHHGCFQEALIMFRKMRSLGIQHDEVT 291
           GY ++  ++ AR++F+    +    W AM+SGY+ +   +EA  +F KM     + +EV+
Sbjct: 279 GYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMP----ERNEVS 338

Query: 292 YTTVISACANGGFFQQGKQVHAYILKNELNPNHNLLLSVNNALITLYCKNDIVDEARKVF 351
           +                                       NA++  Y + + ++ A+++F
Sbjct: 339 W---------------------------------------NAMLAGYVQGERMEMAKELF 398

Query: 352 DQMPLRNIVTWNAILSGYVNAGRIEEAKSFFEEMLEKNLLTLTVMISGLAQNGFGDEGLK 411
           D MP RN+ TWN +++GY   G+I EAK+ F++M +++ ++   MI+G +Q+G   E L+
Sbjct: 399 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALR 458

Query: 412 LFKQMRLDGFEPCDYAYTGAITACSVLGALENGRQLHAQLVHLGYNSNLSVGNALISMYA 471
           LF QM  +G      +++ A++ C+ + ALE G+QLH +LV  GY +   VGNAL+ MY 
Sbjct: 459 LFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 518

Query: 472 RCGVLEAAESVFLSMPFVDLVSWNAMIAALGQHGYGAKAIQLFDQMLKNGVFPDRITFLT 531
           +CG +E A  +F  M   D+VSWN MIA   +HG+G  A++ F+ M + G+ PD  T + 
Sbjct: 519 KCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVA 578

Query: 532 VLTACCHAGLVEEGRHYFSLMFENYGISPDEDHYARMVDLFCRAGMFSYAKNIINTMPSK 591
           VL+AC H GLV++GR YF  M ++YG+ P+  HYA MVDL  RAG+   A N++  MP +
Sbjct: 579 VLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE 638

Query: 592 PGAPVWEALLAGCRIHSNLDLGIEAAEQLFELTPQHDGTYVLLSNMYADVGRWNDVAKVR 651
           P A +W  LL   R+H N +L   AA+++F + P++ G YVLLSN+YA  GRW DV K+R
Sbjct: 639 PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLR 698

Query: 652 KLMRDQGVQKEPACSWIEVENEVHVFLVDDDVHPEVVSVYRYLEELGLEMKKLGYVPDTK 711
             MRD+GV+K P  SWIE++N+ H F V D+ HPE   ++ +LEEL L MKK GYV  T 
Sbjct: 699 VRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTS 758

Query: 712 YVLHDMECEQKEHALSTHSEKVAVAFGLMKLPPGATVRVFKNLRICGDCHNAFKFMSKVV 771
            VLHD+E E+KE  +  HSE++AVA+G+M++  G  +RV KNLR+C DCHNA K+M+++ 
Sbjct: 759 VVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARIT 781

Query: 772 KREIIVRDRKRFHHFKNGECSCGNYW 798
            R II+RD  RFHHFK+G CSCG+YW
Sbjct: 819 GRLIILRDNNRFHHFKDGSCSCGDYW 781

[Close]

BLAST of CmaCh05G002840 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 506.9 bits (1304), Expect = 2.9e-143
Identity = 277/771 (35.93%), Postives = 423/771 (54.86%), Query Frame = 0


Query: 33  RAVHGHMIASGFKPRGHFLNRLLEVYCKS---SNVVYARQLFDEIPSPDAIARTTLITAY 92
           R +H  MI  G     + L++L+E    S     + YA  +F  I  P+ +         
Sbjct: 50  RIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLL--------- 109

Query: 93  SASGNLKLGREIFNGTPLHLRDTVFYNAMIIGYSHNDDGLSALELFRAMRRDDFRPDDFT 152
                                    +N M  G++ + D +SAL+L+  M      P+ +T
Sbjct: 110 ------------------------IWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYT 169

Query: 153 FTSVLSALVLVVGNEQQCGQMHCAVVKSGMGC-VSSSVLNALLSVYVKCASPLAISSSAM 212
           F  VL +       ++   Q+H  V+K  +GC +   V  +L+S+YV+        +  +
Sbjct: 170 FPFVLKSCAKSKAFKEG-QQIHGHVLK--LGCDLDLYVHTSLISMYVQ--------NGRL 229

Query: 213 VSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFESMAEKLGAAWNAMISGYVHHG 272
             A K+FD+ P RD +++T +I GY     +  A+++F+ +  K   +WNAMISGY   G
Sbjct: 230 EDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETG 289

Query: 273 CFQEALIMFRKMRSLGIQHDEVTYTTVISACANGGFFQQGKQVHAYILKNELNPNHNLLL 332
            ++EAL +F+ M    ++ DE T  TV+SACA  G  + G+QVH +I  +    N    L
Sbjct: 290 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSN----L 349

Query: 333 SVNNALITLYCKNDIVDEARKVFDQMPLRNIVTWNAILSGYVNAGRIEEAKSFFEEMLEK 392
            + NALI LY K   ++ A  +F+++P +++++WN ++ GY +    +EA   F+EML  
Sbjct: 350 KIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR- 409

Query: 393 NLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDYAYTGAITACSVLGALENGRQLH 452
                                          G  P D      + AC+ LGA++ GR +H
Sbjct: 410 ------------------------------SGETPNDVTMLSILPACAHLGAIDIGRWIH 469

Query: 453 AQLVH--LGYNSNLSVGNALISMYARCGVLEAAESVFLSMPFVDLVSWNAMIAALGQHGY 512
             +     G  +  S+  +LI MYA+CG +EAA  VF S+    L SWNAMI     HG 
Sbjct: 470 VYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGR 529

Query: 513 GAKAIQLFDQMLKNGVFPDRITFLTVLTACCHAGLVEEGRHYFSLMFENYGISPDEDHYA 572
              +  LF +M K G+ PD ITF+ +L+AC H+G+++ GRH F  M ++Y ++P  +HY 
Sbjct: 530 ADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYG 589

Query: 573 RMVDLFCRAGMFSYAKNIINTMPSKPGAPVWEALLAGCRIHSNLDLGIEAAEQLFELTPQ 632
            M+DL   +G+F  A+ +IN M  +P   +W +LL  C++H N++LG   AE L ++ P+
Sbjct: 590 CMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPE 649

Query: 633 HDGTYVLLSNMYADVGRWNDVAKVRKLMRDQGVQKEPACSWIEVENEVHVFLVDDDVHPE 692
           + G+YVLLSN+YA  GRWN+VAK R L+ D+G++K P CS IE+++ VH F++ D  HP 
Sbjct: 650 NPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPR 709

Query: 693 VVSVYRYLEELGLEMKKLGYVPDTKYVLHDMECEQKEHALSTHSEKVAVAFGLMKLPPGA 752
              +Y  LEE+ + ++K G+VPDT  VL +ME E KE AL  HSEK+A+AFGL+   PG 
Sbjct: 710 NREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGT 741

Query: 753 TVRVFKNLRICGDCHNAFKFMSKVVKREIIVRDRKRFHHFKNGECSCGNYW 798
            + + KNLR+C +CH A K +SK+ KREII RDR RFHHF++G CSC +YW
Sbjct: 770 KLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741

[Close]

BLAST of CmaCh05G002840 vs. TAIR 10
Match: AT1G68930.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 505.8 bits (1301), Expect = 6.5e-143
Identity = 278/793 (35.06%), Postives = 434/793 (54.73%), Query Frame = 0


Query: 9   MVANRYAAKLQLCSPQDPASFS-LARAVHGHMIASGFKPRGHFLNRLLEVYCKSSNVVYA 68
           M +N Y+ +++ C      + S   + +HG++I +   P     N ++  Y    +  YA
Sbjct: 1   MASNYYSVQIKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYA 60

Query: 69  RQLFDEIPSPDAIARTTLITAYSASGNLKLGREIFNGTPLHLRDTVFYNAMIIGYSHNDD 128
           R++FD IP P+  +   L+ AYS +G +      F   P   RD V +N +I GYS +  
Sbjct: 61  RRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLP--DRDGVTWNVLIEGYSLSGL 120

Query: 129 GLSALELFRAMRRDDFRPDDFTFTSVLSALVLVVGNEQQCGQMHCAVVKSGMGCVSSSVL 188
             +A++ +  M RD        F++ L+ + L+   +      H ++ K     +   V+
Sbjct: 121 VGAAVKAYNTMMRD--------FSANLTRVTLMTMLKLSSSNGHVSLGKQ----IHGQVI 180

Query: 189 NALLSVYVKCASPLA---ISSSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGARE 248
                 Y+   SPL     +   +  A+K+F  +  R+ + + +++ G +    +  A +
Sbjct: 181 KLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQ 240

Query: 249 VFESMAEKLGAAWNAMISGYVHHGCFQEALIMFRKMRSLGIQHDEVTYTTVISACANGGF 308
           +F  M EK   +W AMI G   +G  +EA+  FR+M+  G++ D+  + +V+ AC   G 
Sbjct: 241 LFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGA 300

Query: 309 FQQGKQVHAYILKNELNPNHNLLLSVNNALITLYCKNDIVDEARKVFDQMPLRNIVTWNA 368
             +GKQ+HA I++     +    + V +ALI +YCK   +  A+ VFD+M  +N+V+W A
Sbjct: 301 INEGKQIHACIIRTNFQDH----IYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTA 360

Query: 369 ILSGYVNAGRIEEAKSFFEEMLEKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPC 428
           ++ GY   GR EEA                               +K+F  M+  G +P 
Sbjct: 361 MVVGYGQTGRAEEA-------------------------------VKIFLDMQRSGIDPD 420

Query: 429 DYAYTGAITACSVLGALENGRQLHAQLVHLGYNSNLSVGNALISMYARCGVLEAAESVFL 488
            Y    AI+AC+ + +LE G Q H + +  G    ++V N+L+++Y +CG ++ +  +F 
Sbjct: 421 HYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFN 480

Query: 489 SMPFVDLVSWNAMIAALGQHGYGAKAIQLFDQMLKNGVFPDRITFLTVLTACCHAGLVEE 548
            M   D VSW AM++A  Q G   + IQLFD+M+++G+ PD +T   V++AC  AGLVE+
Sbjct: 481 EMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEK 540

Query: 549 GRHYFSLMFENYGISPDEDHYARMVDLFCRAGMFSYAKNIINTMPSKPGAPVWEALLAGC 608
           G+ YF LM   YGI P   HY+ M+DLF R+G    A   IN MP  P A  W  LL+ C
Sbjct: 541 GQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSAC 600

Query: 609 RIHSNLDLGIEAAEQLFELTPQHDGTYVLLSNMYADVGRWNDVAKVRKLMRDQGVQKEPA 668
           R   NL++G  AAE L EL P H   Y LLS++YA  G+W+ VA++R+ MR++ V+KEP 
Sbjct: 601 RNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPG 660

Query: 669 CSWIEVENEVHVFLVDDDVHPEVVSVYRYLEELGLEMKKLGYVPDTKYVLHDMECEQKEH 728
            SWI+ + ++H F  DD+  P +  +Y  LEEL  ++   GY PDT +V HD+E   K  
Sbjct: 661 QSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVK 720

Query: 729 ALSTHSEKVAVAFGLMKLPPGATVRVFKNLRICGDCHNAFKFMSKVVKREIIVRDRKRFH 788
            L+ HSE++A+AFGL+ +P G  +RV KNLR+C DCHNA K +S V  REI+VRD  RFH
Sbjct: 721 MLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFH 743

Query: 789 HFKNGECSCGNYW 798
            FK+G CSCG++W
Sbjct: 781 RFKDGTCSCGDFW 743

The following BLAST results are available for this feature:

BLAST of CmaCh05G002840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FRI5	1.6e-290	59.90	Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX...	[more]
Q9SHZ8	1.2e-162	40.65	Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX...	[more]
Q9SY02	2.2e-159	38.87	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]
Q9LN01	4.1e-142	35.93	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9CAA8	9.2e-142	35.06	Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis th...	[more]

BLAST of CmaCh05G002840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25360.1	1.1e-291	59.90	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G22070.1	8.8e-164	40.65	pentatricopeptide (PPR) repeat-containing protein	[more]
AT4G02750.1	1.5e-160	38.87	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	2.9e-143	35.93	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G68930.1	6.5e-143	35.06	pentatricopeptide (PPR) repeat-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 357..401 e-value: 7.1E-11 score: 42.1 coord: 256..301 e-value: 1.8E-12 score: 47.3 coord: 490..538 e-value: 3.4E-13 score: 49.6 coord: 111..157 e-value: 2.8E-10 score: 40.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 256..288 e-value: 1.0E-6 score: 26.6 coord: 114..146 e-value: 1.0E-5 score: 23.4 coord: 492..525 e-value: 2.9E-8 score: 31.4 coord: 225..251 e-value: 1.4E-5 score: 22.9 coord: 392..423 e-value: 5.8E-6 score: 24.1 coord: 360..390 e-value: 1.2E-8 score: 32.6 coord: 527..562 e-value: 1.7E-5 score: 22.7 coord: 332..359 e-value: 2.2E-4 score: 19.2
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 464..486 e-value: 0.029 score: 14.6 coord: 225..251 e-value: 7.4E-6 score: 25.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 222..252 score: 10.040608
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 111..145 score: 10.64348
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 525..560 score: 8.758137
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 288..322 score: 9.558311
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 253..287 score: 9.996763
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 358..392 score: 12.660359
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 490..524 score: 12.342482
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 664..787 e-value: 1.9E-39 score: 134.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 49..170 e-value: 2.7E-22 score: 81.0 coord: 329..452 e-value: 2.7E-28 score: 100.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 171..328 e-value: 1.7E-29 score: 105.2 coord: 488..684 e-value: 1.6E-35 score: 125.0
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 225..636
None	No IPR available	PANTHER	PTHR47929	FAMILY NOT NAMED	coord: 6..791
None	No IPR available	PANTHER	PTHR47929:SF13	BNACNNG04730D PROTEIN	coord: 6..791

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G002840.1	CmaCh05G002840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding