CmaCh05G002720 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G002720
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	thioredoxin H-type-like
Location	Cma_Chr05: 1155062 .. 1156619 (-)
RNA-Seq Expression	CmaCh05G002720
Synteny	CmaCh05G002720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGGTTTAATCATCGTTTTAATATTTTAATTCTAATTATATTTACTTTAATTTGTGAGCGTTTAAAACATTTTTTTTAATCCTTTTTAATTATAAAATGCATTATAAATATTTTAAAATAAATAGAACATAAAATTTTTCAATAATTTTAAAATTAGTAAAACGTCTAAAAATGGGCATTTAGTAAAAAAAAAACCGAGGAATCGGAGACCTGTCCCACCCCTCATTCTATAAATACCGGCCCACCGCCATTCCTGTATCGGTGCTGTTTTTGATACAGAGAACAATTTTTGCTGGTCTCCGATTTCTGTGTAAGCCATTGGCTCAAGAAGGAAATGTGATTGCCTGTCGTAGTACTTCTGAATGGAATGCTGTATTATTGAAAGAATCTGGAAAACTGGTATAGTCTTTTGATTTTTCAGATTCTTCATTTCTACATTTTAATGGATTCCGATGGATATATGTTGAAAAGCACTTTCACGTTTCCTGATTCCTTTTGCCTTTTCTTTTTCTATTCTTTTCCTGTTTGGAGATTGTTCAATGTTTTGGTAAAAGTCGCGATGGATTCGCCAGAATTTCTGATCTCTTAGGCTAATTATATATTCGATTTATCAATATTGAATGATCTCGTGTTGAAATTTACGATATCTAGGTTTTCTTTTTAACGTCTTAGTGGAATCGTTTGATTTGTATTCTTCAGGACTTCAATCCTTCACTGTTACACTTTTCCTTTTTCTTTAGTATGACCTTGAACTTGATTGTGCTATTTTGCTTCACCACACTTGACTGATTCTGTCTTACAGGCTACTATTACAGTTTGTGTCAATTTTTTGTTCCTGATGTTTCTTAGGTTTTGATTTGATAGATTGTGGTGCATTTTACTGCTTCCTGGTGCGGGCCACGCCGTTTAATTGCTCCATATTTCTTACAATTGGCTAAGAATCATCCTAGTGTCATTTTCCTGGAAGTAGACGTCGATGAATTGAAAGTAAACATACTTAAGCTCTTTTTGCTCTTTCGTATCTATCACATCATATTTCAATAGTTCTGTTTCTTCAAGATATTGTTGAATACTGTAGCATGCGCTAGAGCTCTTTTCTTTTTTACTTGATCCCAACAGTGACTTCCGTTACTCTCTGCAGCATGTTGCTTTCAAGTGGGATATTGAGGCATTACTGACGTTTATTTTCCTGAAAAGAGGGCAAAAATCTCACAGGATTGTTGGTACTGATAGAGCGGCGCTATTGAGGAAAATAGAAGAGCTAAAAACACCAGCAGTTGCTGCTTCTACTGCTTAGACAGTCAGCTTGGAGGATGTGTCCTCCTTATCATCGGTATGGTGTAACAAGGATGATTCCAGCTTTGATTTTGATCTACTTGTGGATTTCATAACATTGTCTAAGATGTTCACTGTTTTTGTTTCTCCTTACAGAAATTGGATTATGTGCGCAACTCTCAAATATGATTATGGTGCTAGTTGTATAGAAGCTGCTGGATTCAATGTGGAATAAATGGGTTAGGAATTTGTAGCCTGCTGTAAGAACTTGACTCACTG

mRNA sequence

ATGTATGGTTTAATCATCAGAACAATTTTTGCTGGTCTCCGATTTCTGTGTAAGCCATTGGCTCAAGAAGGAAATGTGATTGCCTGTCGTAGTACTTCTGAATGGAATGCTGTATTATTGAAAGAATCTGGAAAACTGATTGTGGTGCATTTTACTGCTTCCTGGTGCGGGCCACGCCGTTTAATTGCTCCATATTTCTTACAATTGGCTAAGAATCATCCTAGTGTCATTTTCCTGGAAGTAGACGTCGATGAATTGAAACATGTTGCTTTCAAGTGGGATATTGAGGCATTACTGACGTTTATTTTCCTGAAAAGAGGGCAAAAATCTCACAGGATTGTTGGTACTGATAGAGCGGCGCTATTGAGGAAAATAGAAGAGCTAAAAACACCAGCAGTTGCTGCTTCTACTGCTTAGACAGTCAGCTTGGAGGATGTGTCCTCCTTATCATCGAAATTGGATTATGTGCGCAACTCTCAAATATGATTATGGTGCTAGTTGTATAGAAGCTGCTGGATTCAATGTGGAATAAATGGGTTAGGAATTTGTAGCCTGCTGTAAGAACTTGACTCACTG

Coding sequence (CDS)

ATGTATGGTTTAATCATCAGAACAATTTTTGCTGGTCTCCGATTTCTGTGTAAGCCATTGGCTCAAGAAGGAAATGTGATTGCCTGTCGTAGTACTTCTGAATGGAATGCTGTATTATTGAAAGAATCTGGAAAACTGATTGTGGTGCATTTTACTGCTTCCTGGTGCGGGCCACGCCGTTTAATTGCTCCATATTTCTTACAATTGGCTAAGAATCATCCTAGTGTCATTTTCCTGGAAGTAGACGTCGATGAATTGAAACATGTTGCTTTCAAGTGGGATATTGAGGCATTACTGACGTTTATTTTCCTGAAAAGAGGGCAAAAATCTCACAGGATTGTTGGTACTGATAGAGCGGCGCTATTGAGGAAAATAGAAGAGCTAAAAACACCAGCAGTTGCTGCTTCTACTGCTTAG

Protein sequence

MYGLIIRTIFAGLRFLCKPLAQEGNVIACRSTSEWNAVLLKESGKLIVVHFTASWCGPRRLIAPYFLQLAKNHPSVIFLEVDVDELKHVAFKWDIEALLTFIFLKRGQKSHRIVGTDRAALLRKIEELKTPAVAASTA

Homology

[Close]

BLAST of CmaCh05G002720 vs. ExPASy Swiss-Prot
Match: Q96419 (Thioredoxin H-type OS=Fagopyrum esculentum OX=3617 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-25
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 0


Query: 20  LAQEGNVIACRSTSEWNAVL--LKESGKLIVVHFTASWCGPRRLIAPYFLQLAKNHPSVI 79
           +A+E  VIAC +  EWN      K+SGKLIV+ FTASWCGP R+I PY  +LAK  P V 
Sbjct: 1   MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVA 60

Query: 80  FLEVDVDELKHVAFKWDIEALLTFIFLKRGQKSHRIVGTDRAALLRKI 126
           F +VDVD+LK VA ++ +EA+ +F+ LK GQ+  RIVG  +  LL KI
Sbjct: 61  FFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKI 108

[Close]

BLAST of CmaCh05G002720 vs. ExPASy Swiss-Prot
Match: O65049 (Thioredoxin H-type OS=Picea mariana OX=3335 GN=SB09 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-24
Identity = 56/117 (47.86%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 23  EGNVIACRSTSEWNAVLLK--ESGKLIVVHFTASWCGPRRLIAPYFLQLAKNHPSVIFLE 82
           EGNV AC ST  W + L +  ++ +L+ V FTA+WCGP R+I P F++L+K  P + FL+
Sbjct: 3   EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLK 62

Query: 83  VDVDELKHVAFKWDIEALLTFIFLKRGQKSHRIVGTDRAALLRKIEELKTPAVAAST 138
           VDVDEL+ VA +WD+EA+ TFIF+K G+   ++VG  +  L RK+  L   A AA+T
Sbjct: 63  VDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAAL---AAAATT 116

[Close]

BLAST of CmaCh05G002720 vs. ExPASy Swiss-Prot
Match: P29449 (Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 0


Query: 21  AQEGNVIACRSTSEWNAVLLK--ESGKLIVVHFTASWCGPRRLIAPYFLQLAKNHPSVIF 80
           ++EG V  C    EWN    K  E+ KL+VV FTASWCGP R IAP    +AK  P VIF
Sbjct: 9   SEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIF 68

Query: 81  LEVDVDELKHVAFKWDIEALLTFIFLKRGQKSHRIVGTDRAALLRKIEELKTPAVAAS 137
           L+VDVDELK V+ +W +EA+ TF+F+K G++  R+VG  +  L + I +   PA   +
Sbjct: 69  LKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHAAPATVTA 126

[Close]

BLAST of CmaCh05G002720 vs. ExPASy Swiss-Prot
Match: P29448 (Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.9e-24
Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 21  AQEGNVIACRSTSEWNAVLLK--ESGKLIVVHFTASWCGPRRLIAPYFLQLAKNHPSVIF 80
           ++EG VIAC +   WN  L K  ES  L+VV FTASWCGP R IAP+F  LAK  P+V+F
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLF 62

Query: 81  LEVDVDELKHVAFKWDIEALLTFIFLKRGQKSHRIVGTDRAAL 122
           L+VD DELK VA  W I+A+ TF+FLK G+   ++VG  +  L
Sbjct: 63  LKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDEL 105

[Close]

BLAST of CmaCh05G002720 vs. ExPASy Swiss-Prot
Match: Q0D840 (Thioredoxin H1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRXH PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-23
Identity = 54/120 (45.00%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 21  AQEGNVIACRSTSEWNAVL--LKESGKLIVVHFTASWCGPRRLIAPYFLQLAKNHPSVIF 80
           A+EG VIAC +  E++A +   KE+GK++++ FTASWCGP R IAP F + AK  P  +F
Sbjct: 3   AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVF 62

Query: 81  LEVDVDELKHVAFKWDIEALLTFIFLKRGQKSHRIVGTDRAALLRKIEELKTPAVAASTA 139
           L+VDVDELK VA K+++EA+ TF+F+K G ++ ++VG  +  L   I +      A+++A
Sbjct: 63  LKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVGATAASASA 122

[Close]

BLAST of CmaCh05G002720 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 )

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-25
Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 21  AQEGNVIACRSTSEWNAVLLK--ESGKLIVVHFTASWCGPRRLIAPYFLQLAKNHPSVIF 80
           ++EG VIAC +   WN  L K  ES  L+VV FTASWCGP R IAP+F  LAK  P+V+F
Sbjct: 3   SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLF 62

Query: 81  LEVDVDELKHVAFKWDIEALLTFIFLKRGQKSHRIVGTDRAAL 122
           L+VD DELK VA  W I+A+ TF+FLK G+   ++VG  +  L
Sbjct: 63  LKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDEL 105

[Close]

BLAST of CmaCh05G002720 vs. TAIR 10
Match: AT5G42980.1 (thioredoxin 3 )

HSP 1 Score: 108.6 bits (270), Expect = 4.0e-24
Identity = 54/118 (45.76%), Postives = 74/118 (62.71%), Query Frame = 0


Query: 20  LAQEGNVIACRSTSEWNAVL--LKESGKLIVVHFTASWCGPRRLIAPYFLQLAKNHPSVI 79
           +A EG VIAC +  +W   L    ES KLIV+ FTA+WC P R IAP F  LAK H  V+
Sbjct: 1   MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVV 60

Query: 80  FLEVDVDELKHVAFKWDIEALLTFIFLKRGQKSHRIVGTDRAALLRKIEELKTPAVAA 136
           F +VDVDEL  VA ++ ++A+ TFIF+K G+    +VG  +  ++  +E+ KT   AA
Sbjct: 61  FFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTVVAAA 118

[Close]

BLAST of CmaCh05G002720 vs. TAIR 10
Match: AT1G45145.1 (thioredoxin H-type 5 )

HSP 1 Score: 101.3 bits (251), Expect = 6.4e-22
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 20  LAQEGNVIACRSTSEWNAVL--LKESGKLIVVHFTASWCGPRRLIAPYFLQLAKNHPSVI 79
           +A EG VIAC +   WN  +    ES KLIV+ FTASWC P R IAP F ++AK   +V+
Sbjct: 1   MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVV 60

Query: 80  FLEVDVDELKHVAFKWDIEALLTFIFLKRGQKSHRIVGTDRAALLRKI 126
           F ++DVDEL+ VA ++ +EA+ TF+F+K G    R+VG  +  +  K+
Sbjct: 61  FFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKL 108

[Close]

BLAST of CmaCh05G002720 vs. TAIR 10
Match: AT1G19730.1 (Thioredoxin superfamily protein )

HSP 1 Score: 100.9 bits (250), Expect = 8.4e-22
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 21  AQEGNVIACRSTSEWNAVL--LKESGKLIVVHFTASWCGPRRLIAPYFLQLAKNH-PSVI 80
           A+EG VI C +   W   L   KES KLIV+ FTASWC P R+IAP F  LAK    S I
Sbjct: 3   AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAI 62

Query: 81  FLEVDVDELKHVAFKWDIEALLTFIFLKRGQKSHRIVGTDRAALLRKI 126
           F +VDVDEL+ VA ++ +EA+ TF+F+K G+   ++VG ++  L  KI
Sbjct: 63  FFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKI 110

[Close]

BLAST of CmaCh05G002720 vs. TAIR 10
Match: AT3G08710.1 (thioredoxin H-type 9 )

HSP 1 Score: 99.0 bits (245), Expect = 3.2e-21
Identity = 43/107 (40.19%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 24  GNVIACRSTSEWNAVLLK--ESGKLIVVHFTASWCGPRRLIAPYFLQLAKNHPSVIFLEV 83
           GNV    +   W+  L +    GK++V +F+A+WCGP +++AP+F++L++ H S++FL V
Sbjct: 23  GNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLV 82

Query: 84  DVDELKHVAFKWDIEALLTFIFLKRGQKSHRIVGTDRAALLRKIEEL 129
           DVDEL   +  WDI+A  TF FLK GQ+  ++VG ++  L +K+  +
Sbjct: 83  DVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKVTSI 129

The following BLAST results are available for this feature:

BLAST of CmaCh05G002720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96419	1.2e-25	52.78	Thioredoxin H-type OS=Fagopyrum esculentum OX=3617 PE=3 SV=1	[more]
O65049	1.3e-24	47.86	Thioredoxin H-type OS=Picea mariana OX=3335 GN=SB09 PE=2 SV=1	[more]
P29449	1.8e-24	46.61	Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
P29448	3.9e-24	53.40	Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1	[more]
Q0D840	1.5e-23	45.00	Thioredoxin H1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRXH PE=1 SV=1	[more]

BLAST of CmaCh05G002720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51030.1	2.8e-25	53.40	thioredoxin H-type 1	[more]
AT5G42980.1	4.0e-24	45.76	thioredoxin 3	[more]
AT1G45145.1	6.4e-22	45.37	thioredoxin H-type 5	[more]
AT1G19730.1	8.4e-22	49.07	Thioredoxin superfamily protein	[more]
AT3G08710.1	3.2e-21	40.19	thioredoxin H-type 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 30..125 e-value: 8.7E-19 score: 67.4
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 4..130 score: 10.562605
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 18..133 e-value: 6.3E-28 score: 99.1
None	No IPR available	PANTHER	PTHR10438	THIOREDOXIN	coord: 20..128
None	No IPR available	PANTHER	PTHR10438:SF431	THIOREDOXIN	coord: 20..128
None	No IPR available	CDD	cd02947	TRX_family	coord: 33..124 e-value: 4.7026E-26 score: 92.236
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 21..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G002720.1	CmaCh05G002720.1	mRNA