CmaCh05G002420 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G002420
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	HAD-superfamily hydrolase isoform 1
Location	Cma_Chr05: 1032222 .. 1035355 (+)
RNA-Seq Expression	CmaCh05G002420
Synteny	CmaCh05G002420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATGGTTCAGGTCATAATCATAATTCATTACTCGGAAGCATCACCGTTCTCCGACCATGACAACGATCGGATTCCGCCTTATCTCGGTTCCATCCGCCGTCTCACCACTCTCTCTACTTTCTCATAAACCGAGGGATGATCAAAGCCAAGCGCTACGCCATAACCTTCCGATTACAACATCTCGCCGAGGCCTCACTATGCTCTCATTTCTCTCTGCGATGCCGTCTCTGTTTCTACCTGCTCCCGCCACAGCTTTCGATATCGGCATTTGTAAGTAAACAACGCAACGTTGTTTCATTAATTACTTTGTTTTCCTTGTGTTTATTTTTTCTTCCTGGAGCCCTAGTTTATTCGGTTTGCTTGCAGCAGGACCAAAGGATTGGCTGAGAGAGCAGAAGAAGAAGGCCTCCAGGTTCCTCTTGGCTCCAATTGAGGCCTCCAGAGACAGCCTTCATGCAGTTTACCTTATGCTTTGTAAGTCTTTCACAGTCTCTTGTTTATCCTTTATCTCTTTGTTTCGGTATTTGCTTACATCGTCTCCGCTTGCAGCCAATTATTCCGATTACTCAAACAAGGATATGGAGGACGTTCAAAGAATGCTGAAGTCTGCTGCAAGGGATTGCGTTTTGAAGGACAGGAATTCGTTCGTTCAATTCCAAGCGAGCACTGGAGTCGAGGTTCAATCTGCTAGCATTGCTTATGTTTCTCTCTGTATTCGTTTTGAATGCATTGCGTTTGTAAACCAGGATTTATCCAAAAATGAAGTTCAATTCAAATTATTATTTTAGCATCCTATGTCGCTACTCATAGAATTTGTTGAAGTATAAACTTAATTCACATCGAACAAGGTTAGATATGTTGAAATGTTCTTCCTATATCTTTAGCTTGAACGATCTTTGGTCTCGATTTTTGAATTCTGCAGGTCTGTACATTTCAATTGATTGTGAAAAATGCCGCCTCCTTGCTTGGAAACGAAGATCCTATAAAACTAGAAGCTGAAAGTCGATTAAAAGATCTAGTAAGGTAACCTCCATTTCATTTGCTGGTGCCTGTTATATTATTTCTTCAACTGGATAACGCTTTGATTTTGATAAGTAACGCTTACCTCTTTGGTCGTTTAGTTTTATAAGATAAGCTGCTTTACTTTTATTTGTATAGAGGACGGTATGAATAAAGATTAAATTCGTAAGAGCTCAGATAAAAAAATTCCCAACAAAGTAGCAGAGATGCATTATATTTTCTCTTTCAATAATCCAACAGTTATTAGTTTTGTTTCTACTGGTTGTCAATTGTAATCTTTTCTCGCACTTCTGATGCAGCTCGTTCACTTCTCTTAATAGTCTTGCATATGAAACTGATATTCAAGTCAATTCCAACAGGTACGTCCTCATTTGAAGGCTCAAATAAAGTTTATCTTGACAATTACTTGTCTCATCTCAAATCAGGATTTTAATAGAGAAATACAATTACTTAATAATTAGATTATCCAAAATGTCAGATTGCCTTCCACATACTTTATGTGATAAGGCTGCTGGCCGCATGATCCTTTTTTCCAATCTAGGCAGTTGAGTTAGTAGGTGGTCCATTTGCTTTATTACATGACTTGCATAAATCTCAAGACTAATGTGGAATGGTAGAGACGTGAAACTAGATATAGATTCTGTGGGAATTTGTACTTTGGGAGTGCATAATTGACACTCAACACTAGATCTTCCTAAAAGGTAGCAACGCTGTAAGATTGAAGAATCCATGGAACTGGTGGAAATGTAGTTTGGTTTCAAGGCCAGTACAGCCGTGGAACTCAGATACAATGTTCTCTTGACTTTAACTAAGTGAAGCTCATCCACACTGCTTTATATATTTCATATTGTCGGGCTCTTTTCCTGTGAATTTAGGCACAGAAAATTTTGGTAACCTAAACCTCTTTCCTTGTGTACTTATTTTCTTTCTTTCTTCCCTTCTTTTTTCTTTTTATTGCAGACAAAAAGTACTGGATGCAGTAAATGATACCATAGATTCCCTCGACAAATTCGAGAAGGGTATTAAGGATTGTCTTGAAATTTAAGTCCCGTGATTTTGTTTTGTAATTAGATTTTTCTTATGTTAAGTCCAAACAAACAACAATTAAATGAAGCCAAAAGCAAAGTTTTTAAGCTCATTCTCTAGCTTCTTTAGTGATAATTCTAGTGCTTGAAAGTTGAATGCATATGTACCCACCCTAGCATATATGTGCTTATGTGTGCGTGTATGTGCATGTTCATATTTAGTTTGGTGGAATTATTATATATCTTGAAAATCTGGGAGTGTAATACGCTATCAAGATATTTATAAGTAAATCCATTCGTTTTGACAGTCATATGTTATCATTATTATACTAACAAAGACAGACATTTCATGTGCTCTCAGAACACCATTTCTCTCTGTTAGCAAGTGATAGTAGCTAACTTTCATCTATGGGGCAGTCCTTACGATTCTTTTGATGCTTTCAACGTTATCATTTCTTCCTACAGGACCATGGTATATAAAAAATTAATATCCAACTCTTAGAGTTTATAACCATTGAAAATCAGGTATAAAATAACTATTTGCCGATGATTTTGCCATTTTGTGATGTAAAAATTTTCACTTGTTGCAAATGATTGAGTTGTTACAAGAGATTCCAGTTAATTATTATAAGTTCATTTTCCTAGGCTCGTGTCATTGGCATAGTAGACTATTTCGGGAAAGATGTTTGCATAGGTGATTTCTTTTCACATGCATAAGTGTGAACGTTGTAGTGGAATGCTTGTAATCTACTTCTTTCAGAATGCACAATTTAGGTCCAAGTTTGTTCTAATTGCATAGTTTACACATGACATACTCGAATTCCACATGTATGACTACACCTCTGATATGGTATGGTGTAGAAACCTTGGGCAGTATAATACGACATGCTCTCCTTGGGATAGTTGTAATGAAGCAGGTAGCAGGTAGATGTGACGTCTGACATTCATCCAACCTACTCACTCAGAGATTTTCTTACTTGTGGGTTGTCTTTATGGGACGGTTGTAGCTGAGGTGAACCAGAAGCCTGTACCAAGTACAAGCGGCAGCAAGGTTTTCCATCATCAGGGTGAGTCTGCAATGACCTAG

mRNA sequence

AAAATGGTTCAGGTCATAATCATAATTCATTACTCGGAAGCATCACCGTTCTCCGACCATGACAACGATCGGATTCCGCCTTATCTCGGTTCCATCCGCCGTCTCACCACTCTCTCTACTTTCTCATAAACCGAGGGATGATCAAAGCCAAGCGCTACGCCATAACCTTCCGATTACAACATCTCGCCGAGGCCTCACTATGCTCTCATTTCTCTCTGCGATGCCGTCTCTGTTTCTACCTGCTCCCGCCACAGCTTTCGATATCGGCATTTCAGGACCAAAGGATTGGCTGAGAGAGCAGAAGAAGAAGGCCTCCAGGTTCCTCTTGGCTCCAATTGAGGCCTCCAGAGACAGCCTTCATGCAGTTTACCTTATGCTTTCCAATTATTCCGATTACTCAAACAAGGATATGGAGGACGTTCAAAGAATGCTGAAGTCTGCTGCAAGGGATTGCGTTTTGAAGGACAGGAATTCGTTCGTTCAATTCCAAGCGAGCACTGGAGTCGAGGTCTGTACATTTCAATTGATTGTGAAAAATGCCGCCTCCTTGCTTGGAAACGAAGATCCTATAAAACTAGAAGCTGAAAGTCGATTAAAAGATCTAGTAAGCTCGTTCACTTCTCTTAATAGTCTTGCATATGAAACTGATATTCAAGTCAATTCCAACAGACAAAAAGTACTGGATGCAGTAAATGATACCATAGATTCCCTCGACAAATTCGAGAAGGCTAACTTTCATCTATGGGGCAGTCCTTACGATTCTTTTGATGCTTTCAACGTTATCATTTCTTCCTACAGGACCATGGCTCGTGTCATTGGCATAGTAGACTATTTCGGGAAAGATGTTTGCATAGCTGAGGTGAACCAGAAGCCTGTACCAAGTACAAGCGGCAGCAAGGTTTTCCATCATCAGGGTGAGTCTGCAATGACCTAG

Coding sequence (CDS)

ATGACAACGATCGGATTCCGCCTTATCTCGGTTCCATCCGCCGTCTCACCACTCTCTCTACTTTCTCATAAACCGAGGGATGATCAAAGCCAAGCGCTACGCCATAACCTTCCGATTACAACATCTCGCCGAGGCCTCACTATGCTCTCATTTCTCTCTGCGATGCCGTCTCTGTTTCTACCTGCTCCCGCCACAGCTTTCGATATCGGCATTTCAGGACCAAAGGATTGGCTGAGAGAGCAGAAGAAGAAGGCCTCCAGGTTCCTCTTGGCTCCAATTGAGGCCTCCAGAGACAGCCTTCATGCAGTTTACCTTATGCTTTCCAATTATTCCGATTACTCAAACAAGGATATGGAGGACGTTCAAAGAATGCTGAAGTCTGCTGCAAGGGATTGCGTTTTGAAGGACAGGAATTCGTTCGTTCAATTCCAAGCGAGCACTGGAGTCGAGGTCTGTACATTTCAATTGATTGTGAAAAATGCCGCCTCCTTGCTTGGAAACGAAGATCCTATAAAACTAGAAGCTGAAAGTCGATTAAAAGATCTAGTAAGCTCGTTCACTTCTCTTAATAGTCTTGCATATGAAACTGATATTCAAGTCAATTCCAACAGACAAAAAGTACTGGATGCAGTAAATGATACCATAGATTCCCTCGACAAATTCGAGAAGGCTAACTTTCATCTATGGGGCAGTCCTTACGATTCTTTTGATGCTTTCAACGTTATCATTTCTTCCTACAGGACCATGGCTCGTGTCATTGGCATAGTAGACTATTTCGGGAAAGATGTTTGCATAGCTGAGGTGAACCAGAAGCCTGTACCAAGTACAAGCGGCAGCAAGGTTTTCCATCATCAGGGTGAGTCTGCAATGACCTAG

Protein sequence

MTTIGFRLISVPSAVSPLSLLSHKPRDDQSQALRHNLPITTSRRGLTMLSFLSAMPSLFLPAPATAFDIGISGPKDWLREQKKKASRFLLAPIEASRDSLHAVYLMLSNYSDYSNKDMEDVQRMLKSAARDCVLKDRNSFVQFQASTGVEVCTFQLIVKNAASLLGNEDPIKLEAESRLKDLVSSFTSLNSLAYETDIQVNSNRQKVLDAVNDTIDSLDKFEKANFHLWGSPYDSFDAFNVIISSYRTMARVIGIVDYFGKDVCIAEVNQKPVPSTSGSKVFHHQGESAMT

Homology

[Close]

BLAST of CmaCh05G002420 vs. TAIR 10
Match: AT5G42765.1 (INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 202.2 bits (513), Expect = 5.6e-52
Identity = 109/192 (56.77%), Postives = 144/192 (75.00%), Query Frame = 0


Query: 36  NLPITTSRRGLTMLSFLSAMPSLFLPA----PATAFDIGISGPKDWLREQKKKASRFLLA 95
           +LP   SRR  T+L  LS+  SL L      PA AF +GISGPK+WL++QKKK+SRFLLA
Sbjct: 32  HLPQIISRRDATVL--LSSATSLLLTLSPTNPAFAFSLGISGPKEWLKDQKKKSSRFLLA 91

Query: 96  PIEASRDSLHAVYLMLSNYSDYSNKDMEDVQRMLKSAARDCVLKDRNSFVQFQASTGVEV 155
           PI+A+R +L + YL L++ SDY+ KD+E++Q + KS+ARDCV K+R+S V FQ+ +GVEV
Sbjct: 92  PIDATRQALQSAYLSLTSESDYTEKDLENLQNLFKSSARDCVPKERSSLVDFQSKSGVEV 151

Query: 156 CTFQLIVKNAASLLGNEDPIKLEAESRLKDLVSSFTSLNSLAYETDIQVNSNRQKVLDAV 215
           CTF+L+VKNAASLL ++DP+KLEAE+ L DLV SF SL  L    D+ + S+R+KV D V
Sbjct: 152 CTFKLVVKNAASLLDDKDPVKLEAENILDDLVRSFGSLIVLTNGVDMNLPSDRKKVADGV 211

Query: 216 NDTIDSLDKFEK 224
            +TI  LDKFEK
Sbjct: 212 TETISYLDKFEK 221

The following BLAST results are available for this feature:

BLAST of CmaCh05G002420 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G002420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42765.1	5.6e-52	56.77	INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thyl...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36398	PLASMA MEMBRANE FUSION PROTEIN	coord: 18..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G002420.1	CmaCh05G002420.1	mRNA