CmaCh05G001990 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G001990
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	succinate dehydrogenase subunit 5, mitochondrial-like
Location	Cma_Chr05: 846947 .. 849022 (-)
RNA-Seq Expression	CmaCh05G001990
Synteny	CmaCh05G001990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCTAAATGGCCCAACAATGTCGGCCCCAAAAACAAATAAAGAAGAAATGGAGGGAGGCACTCCTCTCTGAAATTGGATATCAACTCTCTTCTTTTATTACCCGGTCATCGAACAGCCTCTTGTCTCGAGTTAGCTTTCAATTTTGCCGTTTCGAGGAAAAAACCGGAAGTCTCGGAGAAAATGGTGATTCTCAGATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTAAAGAGTCACCATCTGGCTGCCCGAAGTTTCTTCTCTCTGTTGTCTCATCGTTCTTCTTTCTCAGATTTTCCGCTGAGAGTTTCTTCTGGTATTCCTCCTAATTAGTATACTTACAGCCTATTTATTATAGATTCAAATCTCTCCTGATTAATTTTGGAAAGAAGCGGAATTTCTGATGAAGTCATTCGCTATTCTTTATTCAACTTAATTAATGCTAGCTATTGATTTTCTCAGTTGGTTGCTGATATGCTTGTGTCTTACTGGTGATTAGTTAAATGTATAGATCTTCTACCATGAATTGCACATACAGATGTAGTTCTTACAAATCAAAATTTTGCTTGCTATATTTGTACAGTAAACTGCTATGTTCTTTTCTGCATTAGTATTTATCATCAAGTCTTCCTAGTGTTCGCAATTTGTGGTTAGTTTTGTTGAAATGCCGAGTTTCTTTAAGTGCCCCTTGTTACTTTAAGCAATGCTTTTGTCTTAAAGAATTGTAACAAAATAAATCTCGTATCAGAGAGAAGGAATATCAACTAAAGTTTTAAAATTTCAACAATTCTGGGTAGAAATGTGCACTGTGCAAAGTTTTATTGTTTCAGCTCGCTGCAATGTGAAGTGACTGAATAACGTTGATAGACCGAATTAAATTATTTTTTCAGTATTATAATGTTTGAAAATAAATCATATGCCTGTTTCTTCTGGTAAATTTCAGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGCTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTATCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGTATTGGAAATTATACATTTATCAAATTAATTTTTTTTTCCTCTCCAGATTCTTATCAAGTGAAAACTTCGGAGTCTATGTACAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTAAAAAGCTTCTCGCTATATAGTTTGTTAATTGCAATTTTCAAATAAATAAGTTGGTGAAACGAGTATTGATCATTAAGCAATTTTTGTTAACCATAGCTTCTATTTTATTTTACGACAGATTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAAATTTGGCTTCGTTGAAAGTTTGGCTGTAGTTGCTAGCCTACTCTAGTTTGGGTGTTTGTTTTTCAATTTTTACTGTCTGCTTCTCTCAAATCCAAAAAATTGTGGATTTAATGGCAATTGAATAAGATCTCACATTGACAAATGAGTTCTCAGAATTTAACTTCCTTGCATGTTTGTCAATTATTGGGTTCCTTTTACAAGTTTATATCATCAGTTTCATGTTTTTGCATTTATGTGTTCTTGAAGAGTTCTGTGATCTACGGAGGGGGCAACCTTAACTATGATTATTGCTACTGCAACTGCATATTAGCGGTAATTAATTTAAGAGGGTTTATGAGGTG

mRNA sequence

GGCCTAAATGGCCCAACAATGTCGGCCCCAAAAACAAATAAAGAAGAAATGGAGGGAGGCACTCCTCTCTGAAATTGGATATCAACTCTCTTCTTTTATTACCCGGTCATCGAACAGCCTCTTGTCTCGAGTTAGCTTTCAATTTTGCCGTTTCGAGGAAAAAACCGGAAGTCTCGGAGAAAATGGTGATTCTCAGATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTAAAGAGTCACCATCTGGCTGCCCGAAGTTTCTTCTCTCTGTTGTCTCATCGTTCTTCTTTCTCAGATTTTCCGCTGAGAGTTTCTTCTGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGCTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTATCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGATTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAAATTTGGCTTCGTTGAAAGTTTGGCTGTAGTTGCTAGCCTACTCTAGTTTGGGTGTTTGTTTTTCAATTTTTACTGTCTGCTTCTCTCAAATCCAAAAAATTGTGGATTTAATGGCAATTGAATAAGATCTCACATTGACAAATGAGTTCTCAGAATTTAACTTCCTTGCATGTTTGTCAATTATTGGGTTCCTTTTACAAGTTTATATCATCAGTTTCATGTTTTTGCATTTATGTGTTCTTGAAGAGTTCTGTGATCTACGGAGGGGGCAACCTTAACTATGATTATTGCTACTGCAACTGCATATTAGCGGTAATTAATTTAAGAGGGTTTATGAGGTG

Coding sequence (CDS)

ATGGTGATTCTCAGATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTAAAGAGTCACCATCTGGCTGCCCGAAGTTTCTTCTCTCTGTTGTCTCATCGTTCTTCTTTCTCAGATTTTCCGCTGAGAGTTTCTTCTGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGCTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTATCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGATTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAA

Protein sequence

MVILRSLLRSVRARSYVIAGVTHRNLLKSHHLAARSFFSLLSHRSSFSDFPLRVSSADCGYLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA

Homology

[Close]

BLAST of CmaCh05G001990 vs. ExPASy Swiss-Prot
Match: Q9SX77 (Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.7e-62
Identity = 118/176 (67.05%), Postives = 143/176 (81.25%), Query Frame = 0


Query: 64  GVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGK 123
           G+   R FS DV +MP + D+ + NAFKDLMAA W  LP +VV D K A+S +T+DKAG+
Sbjct: 82  GMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQ 141

Query: 124 EIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYL 183
           E ++NVFRAAEA E+FG IL ++KMEIDDSIG+SGE VKPL +++  AL+T Y RY  YL
Sbjct: 142 EALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYL 201

Query: 184 DAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 240
           D+F PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGK++VLGTSGLSGSYVEQRA
Sbjct: 202 DSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

[Close]

BLAST of CmaCh05G001990 vs. ExPASy Swiss-Prot
Match: Q0JDA2 (Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH5 PE=1 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.3e-56
Identity = 104/171 (60.82%), Postives = 138/171 (80.70%), Query Frame = 0


Query: 69  RFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGKEIVEN 128
           R FS +  ++P I D ++++AFKDLMAASW  LP+S+V + K A S +T+DKAGKE + N
Sbjct: 61  RLFSSNEKHLPAISDPEVESAFKDLMAASWTGLPDSLVIEAKKAASKATDDKAGKEALLN 120

Query: 129 VFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYLDAFGP 188
           VFRAAEA E+FG +L+ L+M +DD  G++GE+V PL   ++ A+++ Y RY  YL++FGP
Sbjct: 121 VFRAAEACEEFGGVLVTLRMALDDLCGITGENVGPLPGYIEDAVKSAYKRYMKYLESFGP 180

Query: 189 EENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 240
           EENYLRKKVE ELGTKMI+LKMRCSG+GSEWGKI+++GTSG+SGSYVE RA
Sbjct: 181 EENYLRKKVENELGTKMIHLKMRCSGVGSEWGKITLIGTSGISGSYVELRA 231

[Close]

BLAST of CmaCh05G001990 vs. TAIR 10
Match: AT1G47420.1 (succinate dehydrogenase 5 )

HSP 1 Score: 239.6 bits (610), Expect = 2.6e-63
Identity = 118/176 (67.05%), Postives = 143/176 (81.25%), Query Frame = 0


Query: 64  GVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGK 123
           G+   R FS DV +MP + D+ + NAFKDLMAA W  LP +VV D K A+S +T+DKAG+
Sbjct: 82  GMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQ 141

Query: 124 EIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYL 183
           E ++NVFRAAEA E+FG IL ++KMEIDDSIG+SGE VKPL +++  AL+T Y RY  YL
Sbjct: 142 EALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYL 201

Query: 184 DAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKISVLGTSGLSGSYVEQRA 240
           D+F PEE YL+KKVE ELGTKMI+LKMRCSGLGSEWGK++VLGTSGLSGSYVEQRA
Sbjct: 202 DSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

The following BLAST results are available for this feature:

BLAST of CmaCh05G001990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX77	3.7e-62	67.05	Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q0JDA2	2.3e-56	60.82	Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica...	[more]

BLAST of CmaCh05G001990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47420.1	2.6e-63	67.05	succinate dehydrogenase 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025397	Succinate dehydrogenase subunit 5, mitochondrial	PFAM	PF14290	DUF4370	coord: 1..239 e-value: 1.1E-101 score: 339.6
IPR025397	Succinate dehydrogenase subunit 5, mitochondrial	PANTHER	PTHR36139	SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIAL	coord: 1..239
None	No IPR available	PANTHER	PTHR36139:SF1	SUCCINATE DEHYDROGENASE SUBUNIT 5, MITOCHONDRIAL	coord: 1..239

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G001990.1	CmaCh05G001990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006099	tricarboxylic acid cycle
cellular_component	GO:0045273	respiratory chain complex II