CmaCh05G001790 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G001790
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	BHLH transcription factor
Location	Cma_Chr05: 758601 .. 759695 (+)
RNA-Seq Expression	CmaCh05G001790
Synteny	CmaCh05G001790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTTTCTTTCACCTTCTTCATCTTCTTCTTCTTCTGCAAGTTTCTATAAGATTCGAGCCTTCGACTATTATTCTTTTTTTTTTTTCTCTGTACTTCCATATCTTTCTTATTCGTCTTTTTGTATTTCTAATTATTTATTGAGAGGGATTGGCGATGGGATGGATGTTCTGACTCAGATGGAAAATTTTTCTGAGTATTTTGAATTTACTAAACTGCCAGCTTCGCCTTTTTCTTTTGGGAGTTCCAATATTGGTGCCACTTCAATCCGCTTTCAAAACCCAACTCCCATTCTCCCTTCTTATGCTCTCTCATCCACCGCTTCAATGAATAACGCCACTCACCCTCTTGCGCCACCGTGTCTTCCACCCCATTCCTCTGCTGCCACCCCAAACTCCCACACGGTACGTATCATACCATACTCTAAACTACAAATCATATGTTGAACCCAAATATGTTTTTGCACAAAATGTATTCGAAAGATTAAATTTTTAAAAATAGGCGGTCTCATGAGTTGATTATTATTTCAGAAGCAGCAGCAAGATTCAATGGGCGCGATGAGGGAGATGATATACAGGATAGCGGCGATGCAGCCGATCCAGATAGACCCAGAAGCGGTTAAGCCACCAAAGCGGCGGAATGTGAAGATATCAAAAGATCCACAGAGCGTAGCGGCGCGGCATAGAAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAAAGAATAGTCCCTGGCGGCACCAAAATGGACACCGCTTCCATGTTAGACGAGGCCATTCATTACGTTAAGTTCTTGAAAAACCAAGTCCAATGCCTCCAAATAGCCGCCAACAACCGCCCCTCCTCCGCCTTTGGCTTTCCGGCGGCGATGTCGGCCGGTGGAAGCAACTACAAGCAATTCCACTTTGCTCAAAGTGGACATGAGCACGTGGAGGATGCTTGAATGTTTGTGCCGAATGAATGAATGAATCGGTTGTTATATGTTTTTGTTTTCTGGGAATGTGTCGGATTGATCGATGAGTGTTCCAAATTTGGTAAATTGTAAGAATGAGGTTTTGAAACAGACATCCACTCCTCCCAAACCGTTGTCTCATGA

mRNA sequence

CACTTTCTTTCACCTTCTTCATCTTCTTCTTCTTCTGCAAGTTTCTATAAGATTCGAGCCTTCGACTATTATTCTTTTTTTTTTTTCTCTGTACTTCCATATCTTTCTTATTCGTCTTTTTGTATTTCTAATTATTTATTGAGAGGGATTGGCGATGGGATGGATGTTCTGACTCAGATGGAAAATTTTTCTGAGTATTTTGAATTTACTAAACTGCCAGCTTCGCCTTTTTCTTTTGGGAGTTCCAATATTGGTGCCACTTCAATCCGCTTTCAAAACCCAACTCCCATTCTCCCTTCTTATGCTCTCTCATCCACCGCTTCAATGAATAACGCCACTCACCCTCTTGCGCCACCGTGTCTTCCACCCCATTCCTCTGCTGCCACCCCAAACTCCCACACGAAGCAGCAGCAAGATTCAATGGGCGCGATGAGGGAGATGATATACAGGATAGCGGCGATGCAGCCGATCCAGATAGACCCAGAAGCGGTTAAGCCACCAAAGCGGCGGAATGTGAAGATATCAAAAGATCCACAGAGCGTAGCGGCGCGGCATAGAAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAAAGAATAGTCCCTGGCGGCACCAAAATGGACACCGCTTCCATGTTAGACGAGGCCATTCATTACGTTAAGTTCTTGAAAAACCAAGTCCAATGCCTCCAAATAGCCGCCAACAACCGCCCCTCCTCCGCCTTTGGCTTTCCGGCGGCGATGTCGGCCGGTGGAAGCAACTACAAGCAATTCCACTTTGCTCAAAGTGGACATGAGCACGTGGAGGATGCTTGAATGTTTGTGCCGAATGAATGAATGAATCGGTTGTTATATGTTTTTGTTTTCTGGGAATGTGTCGGATTGATCGATGAGTGTTCCAAATTTGGTAAATTGTAAGAATGAGGTTTTGAAACAGACATCCACTCCTCCCAAACCGTTGTCTCATGA

Coding sequence (CDS)

ATGGATGTTCTGACTCAGATGGAAAATTTTTCTGAGTATTTTGAATTTACTAAACTGCCAGCTTCGCCTTTTTCTTTTGGGAGTTCCAATATTGGTGCCACTTCAATCCGCTTTCAAAACCCAACTCCCATTCTCCCTTCTTATGCTCTCTCATCCACCGCTTCAATGAATAACGCCACTCACCCTCTTGCGCCACCGTGTCTTCCACCCCATTCCTCTGCTGCCACCCCAAACTCCCACACGAAGCAGCAGCAAGATTCAATGGGCGCGATGAGGGAGATGATATACAGGATAGCGGCGATGCAGCCGATCCAGATAGACCCAGAAGCGGTTAAGCCACCAAAGCGGCGGAATGTGAAGATATCAAAAGATCCACAGAGCGTAGCGGCGCGGCATAGAAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAAAGAATAGTCCCTGGCGGCACCAAAATGGACACCGCTTCCATGTTAGACGAGGCCATTCATTACGTTAAGTTCTTGAAAAACCAAGTCCAATGCCTCCAAATAGCCGCCAACAACCGCCCCTCCTCCGCCTTTGGCTTTCCGGCGGCGATGTCGGCCGGTGGAAGCAACTACAAGCAATTCCACTTTGCTCAAAGTGGACATGAGCACGTGGAGGATGCTTGA

Protein sequence

MDVLTQMENFSEYFEFTKLPASPFSFGSSNIGATSIRFQNPTPILPSYALSSTASMNNATHPLAPPCLPPHSSAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQCLQIAANNRPSSAFGFPAAMSAGGSNYKQFHFAQSGHEHVEDA

Homology

[Close]

BLAST of CmaCh05G001790 vs. ExPASy Swiss-Prot
Match: Q9FHA7 (Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-39
Identity = 84/101 (83.17%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 78  NSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAARHRRERI 137
           NS+      +M AMREMI+RIA MQPI IDPEAVKPPKRRNV+ISKDPQSVAARHRRERI
Sbjct: 85  NSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERI 144

Query: 138 SERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQCLQ 179
           SERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QVQ L+
Sbjct: 145 SERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 185

[Close]

BLAST of CmaCh05G001790 vs. ExPASy Swiss-Prot
Match: Q9SND4 (Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.9e-37
Identity = 105/224 (46.88%), Postives = 128/224 (57.14%), Query Frame = 0


Query: 3   VLTQMENFSEYFEFTKLPASPFSFGSSNIGATSIRFQNPT-------PILPSYALSSTAS 62
           ++ QME   E+F  +    +P +    +   T   F NPT         +P +       
Sbjct: 11  MMQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHH----QPG 70

Query: 63  MNNATHPLAPPCLPPHSSAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPK 122
           +N    P     LP      + N+       +M AMREMI+RIA MQPI IDPE+VKPPK
Sbjct: 71  LNFRYAPSPSSSLPEKRGGCSDNA-------NMAAMREMIFRIAVMQPIHIDPESVKPPK 130

Query: 123 RRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQ 182
           R+NV+ISKDPQSVAARHRRERISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QVQ
Sbjct: 131 RKNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQ 190

Query: 183 CLQ----IAANNRPSSAFGFPAAMSAGGSNYKQFHFAQSGHEHV 216
            L+    +      + A G  A    GG   K     +S H  +
Sbjct: 191 SLEEHAVVNGGGMTAVAGGALAGTVGGGYGGKGCGIMRSDHHQM 223

[Close]

BLAST of CmaCh05G001790 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.3e-33
Identity = 79/127 (62.20%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 61  HPLAPPCLPPHSSAATPNSHTKQQQ----------DSMGAMREMIYRIAAMQPIQIDPEA 120
           +P +    PP SS+ T  +     Q          + +GAM+EM+Y+IAAMQ + IDP  
Sbjct: 55  NPFSSSHFPPLSSSLTTTTLLSGDQEDDEDEEEPLEELGAMKEMMYKIAAMQSVDIDPAT 114

Query: 121 VKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFL 178
           VK PKRRNV+IS DPQSVAARHRRERISERIRILQR+VPGGTKMDTASMLDEAI YVKFL
Sbjct: 115 VKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFL 174

[Close]

BLAST of CmaCh05G001790 vs. ExPASy Swiss-Prot
Match: O81313 (Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 77/141 (54.61%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 54  ASMNNATHPLAPPCLPPHSSAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKP 113
           A +N+  H +  P  PP +         ++  + M AM+EM Y IA MQP+ IDP  V  
Sbjct: 55  AFLNDPHHLMLDP--PPETLIHL--DEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATVPK 114

Query: 114 PKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQ 173
           P RRNV+IS DPQ+V AR RRERISE+IRIL+RIVPGG KMDTASMLDEAI Y KFLK Q
Sbjct: 115 PNRRNVRISDDPQTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQ 174

Query: 174 VQCLQIAANNRPSSAFGFPAA 195
           V+ LQ      P S  G P A
Sbjct: 175 VRILQ------PHSQIGAPMA 185

[Close]

BLAST of CmaCh05G001790 vs. ExPASy Swiss-Prot
Match: Q8S3D2 (Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.8e-27
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 71  HSSAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAA 130
           HS+  + N   +   +++  M+EMIYR AA +P+    E V+ PKR+NVKIS DPQ+VAA
Sbjct: 227 HSTCLSDN--VEPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAA 286

Query: 131 RHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQCLQIAANNRP 186
           R RRERISE+IR+LQ +VPGGTKMDTASMLDEA +Y+KFL+ QV+ L+   N RP
Sbjct: 287 RQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE---NLRP 336

[Close]

BLAST of CmaCh05G001790 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 164.5 bits (415), Expect = 9.8e-41
Identity = 84/101 (83.17%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 78  NSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAARHRRERI 137
           NS+      +M AMREMI+RIA MQPI IDPEAVKPPKRRNV+ISKDPQSVAARHRRERI
Sbjct: 85  NSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERI 144

Query: 138 SERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQCLQ 179
           SERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QVQ L+
Sbjct: 145 SERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 185

[Close]

BLAST of CmaCh05G001790 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-38
Identity = 105/224 (46.88%), Postives = 128/224 (57.14%), Query Frame = 0


Query: 3   VLTQMENFSEYFEFTKLPASPFSFGSSNIGATSIRFQNPT-------PILPSYALSSTAS 62
           ++ QME   E+F  +    +P +    +   T   F NPT         +P +       
Sbjct: 11  MMQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMPHH----QPG 70

Query: 63  MNNATHPLAPPCLPPHSSAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPK 122
           +N    P     LP      + N+       +M AMREMI+RIA MQPI IDPE+VKPPK
Sbjct: 71  LNFRYAPSPSSSLPEKRGGCSDNA-------NMAAMREMIFRIAVMQPIHIDPESVKPPK 130

Query: 123 RRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQ 182
           R+NV+ISKDPQSVAARHRRERISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QVQ
Sbjct: 131 RKNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQ 190

Query: 183 CLQ----IAANNRPSSAFGFPAAMSAGGSNYKQFHFAQSGHEHV 216
            L+    +      + A G  A    GG   K     +S H  +
Sbjct: 191 SLEEHAVVNGGGMTAVAGGALAGTVGGGYGGKGCGIMRSDHHQM 223

[Close]

BLAST of CmaCh05G001790 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-34
Identity = 79/127 (62.20%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 61  HPLAPPCLPPHSSAATPNSHTKQQQ----------DSMGAMREMIYRIAAMQPIQIDPEA 120
           +P +    PP SS+ T  +     Q          + +GAM+EM+Y+IAAMQ + IDP  
Sbjct: 55  NPFSSSHFPPLSSSLTTTTLLSGDQEDDEDEEEPLEELGAMKEMMYKIAAMQSVDIDPAT 114

Query: 121 VKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFL 178
           VK PKRRNV+IS DPQSVAARHRRERISERIRILQR+VPGGTKMDTASMLDEAI YVKFL
Sbjct: 115 VKKPKRRNVRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFL 174

[Close]

BLAST of CmaCh05G001790 vs. TAIR 10
Match: AT4G00120.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 128.3 bits (321), Expect = 7.8e-30
Identity = 77/141 (54.61%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 54  ASMNNATHPLAPPCLPPHSSAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKP 113
           A +N+  H +  P  PP +         ++  + M AM+EM Y IA MQP+ IDP  V  
Sbjct: 55  AFLNDPHHLMLDP--PPETLIHL--DEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATVPK 114

Query: 114 PKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQ 173
           P RRNV+IS DPQ+V AR RRERISE+IRIL+RIVPGG KMDTASMLDEAI Y KFLK Q
Sbjct: 115 PNRRNVRISDDPQTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQ 174

Query: 174 VQCLQIAANNRPSSAFGFPAA 195
           V+ LQ      P S  G P A
Sbjct: 175 VRILQ------PHSQIGAPMA 185

[Close]

BLAST of CmaCh05G001790 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 5.6e-28
Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 71  HSSAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAA 130
           HS+  + N   +   +++  M+EMIYR AA +P+    E V+ PKR+NVKIS DPQ+VAA
Sbjct: 227 HSTCLSDN--VEPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAA 286

Query: 131 RHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQCLQIAANNRP 186
           R RRERISE+IR+LQ +VPGGTKMDTASMLDEA +Y+KFL+ QV+ L+   N RP
Sbjct: 287 RQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE---NLRP 336

The following BLAST results are available for this feature:

BLAST of CmaCh05G001790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHA7	1.4e-39	83.17	Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1	[more]
Q9SND4	2.9e-37	46.88	Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1	[more]
Q9LXD8	3.3e-33	62.20	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]
O81313	1.1e-28	54.61	Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3	[more]
Q8S3D2	7.8e-27	57.39	Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1	[more]

BLAST of CmaCh05G001790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67060.1	9.8e-41	83.17	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G50330.1	2.0e-38	46.88	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	2.3e-34	62.20	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G00120.1	7.8e-30	54.61	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	5.6e-28	57.39	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 127..176 e-value: 6.4E-13 score: 58.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 131..170 e-value: 1.5E-6 score: 28.1
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 121..170 score: 15.148091
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 120..187 e-value: 1.1E-11 score: 46.7
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 125..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..86
None	No IPR available	PANTHER	PTHR45914:SF29	BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN	coord: 37..207
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 37..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G001790.1	CmaCh05G001790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity