CmaCh05G001610 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G001610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	F-box protein GID2-like
Location	Cma_Chr05: 693803 .. 694219 (+)
RNA-Seq Expression	CmaCh05G001610
Synteny	CmaCh05G001610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAATCAAATCAGTTTCACAGGAACAGCAATCCCCACCACCCTCCTCCTCTGCCTTTGCGAATTTAGACGACAATCTCTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTCGCCACGGCCTCCGGCGTCAGCAAGCAGTGGTACAAAACCGCCCACGACGAGTGGCTCTGGGAGCTGCTCTGCACCAAACACTGGGCTAACATCGGCTGTGCTAACCCACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGCCGATTGCACTCTCTTTACCCATTTCCCCCTATCATAGGATCCGCATCCTGTATTGCCTGGGGCAAAGGCGAGGTTCATCTCTCCCTCTCTCTTCTCTCAATTCGGTACTACGAGAAGATGAAGTTCAAAAACAGACCCACTTCTTGA

mRNA sequence

ATGAAGAAAATCAAATCAGTTTCACAGGAACAGCAATCCCCACCACCCTCCTCCTCTGCCTTTGCGAATTTAGACGACAATCTCTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTCGCCACGGCCTCCGGCGTCAGCAAGCAGTGGTACAAAACCGCCCACGACGAGTGGCTCTGGGAGCTGCTCTGCACCAAACACTGGGCTAACATCGGCTGTGCTAACCCACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGCCGATTGCACTCTCTTTACCCATTTCCCCCTATCATAGGATCCGCATCCTGTATTGCCTGGGGCAAAGGCGAGGTTCATCTCTCCCTCTCTCTTCTCTCAATTCGGTACTACGAGAAGATGAAGTTCAAAAACAGACCCACTTCTTGA

Coding sequence (CDS)

ATGAAGAAAATCAAATCAGTTTCACAGGAACAGCAATCCCCACCACCCTCCTCCTCTGCCTTTGCGAATTTAGACGACAATCTCTTGTTCGAGGTGTTTAAGCACGTCGACGCAAGGACACTCGCCACGGCCTCCGGCGTCAGCAAGCAGTGGTACAAAACCGCCCACGACGAGTGGCTCTGGGAGCTGCTCTGCACCAAACACTGGGCTAACATCGGCTGTGCTAACCCACAGCTACGCTCCGTCGTGCTTGCGCTTGGTGGCTTCCGCCGATTGCACTCTCTTTACCCATTTCCCCCTATCATAGGATCCGCATCCTGTATTGCCTGGGGCAAAGGCGAGGTTCATCTCTCCCTCTCTCTTCTCTCAATTCGGTACTACGAGAAGATGAAGTTCAAAAACAGACCCACTTCTTGA

Protein sequence

MKKIKSVSQEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDEWLWELLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASCIAWGKGEVHLSLSLLSIRYYEKMKFKNRPTS

Homology

[Close]

BLAST of CmaCh05G001610 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.6e-39
Identity = 82/135 (60.74%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 2   KKIKSVSQEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDEWLW 61
           KK+KS  +E+         F+NLD+NL++EV KHVDA+TLA +S VSK W+KTA DE LW
Sbjct: 20  KKMKSTEEEE-------IGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLW 79

Query: 62  ELLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASCIAWGKGEVHLSLSL 121
           EL+CT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+        +GK E+ L+LSL
Sbjct: 80  ELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW-PLSKPNPRARFGKDELKLTLSL 139

Query: 122 LSIRYYEKMKFKNRP 137
           LSIRYYEKM F  RP
Sbjct: 140 LSIRYYEKMSFTKRP 146

[Close]

BLAST of CmaCh05G001610 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.2e-22
Identity = 56/138 (40.58%), Postives = 81/138 (58.70%), Query Frame = 0


Query: 9   QEQQSPPPSSSA------FANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDEWLWE 68
           Q+Q+  PP  +         +L ++L+FEV +  +ARTLA A+ VS+ W + A DE LWE
Sbjct: 55  QQQEEQPPEDAGEGEQPRVPDLGEDLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWE 114

Query: 69  LLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASC----------IAWGK 128
             C + WAN+G +  QLR+VVL+LGGFRRLH++Y  P     A            +  G+
Sbjct: 115 AACVREWANLGFSERQLRAVVLSLGGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRLGR 174

Query: 129 GEVHLSLSLLSIRYYEKM 131
            +V LSLSL SI +++ M
Sbjct: 175 DQVQLSLSLFSIGFFQNM 192

[Close]

BLAST of CmaCh05G001610 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 161.0 bits (406), Expect = 6.8e-40
Identity = 82/135 (60.74%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 2   KKIKSVSQEQQSPPPSSSAFANLDDNLLFEVFKHVDARTLATASGVSKQWYKTAHDEWLW 61
           KK+KS  +E+         F+NLD+NL++EV KHVDA+TLA +S VSK W+KTA DE LW
Sbjct: 20  KKMKSTEEEE-------IGFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLW 79

Query: 62  ELLCTKHWANIGCANPQLRSVVLALGGFRRLHSLYPFPPIIGSASCIAWGKGEVHLSLSL 121
           EL+CT+HW NIGC   QLRSVVLALGGFRRLHSLY + P+        +GK E+ L+LSL
Sbjct: 80  ELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLW-PLSKPNPRARFGKDELKLTLSL 139

Query: 122 LSIRYYEKMKFKNRP 137
           LSIRYYEKM F  RP
Sbjct: 140 LSIRYYEKMSFTKRP 146

[Close]

BLAST of CmaCh05G001610 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-11
Identity = 34/104 (32.69%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 27  NLLFEVFKHVDARTLATASGVSKQWYKTAHDEWLWELLCTKHWANIGCANPQLRSVVLAL 86
           ++L E+ + +D  +L +A+ V + W   A ++ +WE LC +  +     +  LRSVV AL
Sbjct: 33  DVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVS--PRPSLSLRSVVSAL 92

Query: 87  GGFRRLHSLYPFPPIIGSASCIAWGKGEVHLSLSLLSIRYYEKM 131
           GG+R L+ L    P++     + W + ++ LSLSL  + YYE++
Sbjct: 93  GGYRCLYFLC-IRPVLARLPKLLWTRDQLQLSLSLYCVHYYERL 133

[Close]

BLAST of CmaCh05G001610 vs. TAIR 10
Match: AT5G39250.1 (F-box family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.6e-04
Identity = 16/47 (34.04%), Postives = 26/47 (55.32%), Query Frame = 0


Query: 26 DNLLFEVFKHVDARTLATASGVSKQWYKTAHDEWLWELLCTKHWANI 73
          + +L  VF  ++   LA+  GV KQW   A D++ W+  C K W ++
Sbjct: 4  EEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSV 50

The following BLAST results are available for this feature:

BLAST of CmaCh05G001610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	9.6e-39	60.74	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	8.2e-22	40.58	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]

BLAST of CmaCh05G001610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	6.8e-40	60.74	F-box family protein	[more]
AT5G48170.1	3.9e-11	32.69	F-box family protein	[more]
AT5G39250.1	4.6e-04	34.04	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 3..110 e-value: 7.3E-12 score: 47.1
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 6..101 coord: 97..133
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 26..66 e-value: 2.4E-7 score: 30.5
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 18..64 score: 9.391492
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 6..101 coord: 97..133
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 13..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G001610.1	CmaCh05G001610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding