CmaCh05G001330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G001330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	F-box protein
Location	Cma_Chr05: 588182 .. 589952 (+)
RNA-Seq Expression	CmaCh05G001330
Synteny	CmaCh05G001330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATATGCAAGGCGACGAAAAATGCAGTTAATTGAAAAGGTTTGTTCGTCCATCTCTTGGAACACTCGTAAATTTGAGTCGGCAGATTACCTCTGACAATCACTTATGGCATCTTCGATTCTGAGAGAATAATTCCTTATTCCAGATTGGATCTTCCCTCACGCACAGGAAACCCCGACTGGAAGTTTATTTGGGTAATTTCATTGGGAAAACTTGGGACCGAATTTTCCGAGGAAATCAATTCATAGAACTGCAAACATGGCGAATCTTAGCTCCGAAATTGACGAAATTGGTTCCTTCTCCTTCACTGACTTCCCGGAAGATGTTCAGTTATGCATCCTCTCCTTCCTCTCCCCCTCCGATATTGCATCTTTCTCTTGCACCTCGAAGAGATTCGTCTCTCTCTGCAGGAATGATAGGAAACTCTGGTTTACTATGTGCGATCGGAGATGGGGTTCCACTACTCAGATCAACAATTGGGGAAAAGGGAAAATCGCTTACAGGTTACTCTATAAAACTCTTCACCAATGGGAGAATCTCATCGGTTTTTGGCGCCGGAGTGGCTCGCCGACCATCGGCGTCTCATCGCCGCCATTGGTGTTCTTCGAATGGGGCCCTGATTTTCTTGCTGGCTCTAGGGTTTCACCGTCAAAGAACGGTACTTACGACGTGTTTAAATCTCCATTTCTATGGATGGGGCTCTCCCCGGAAGCTCAGGCCATGAGTTTCATCGACCCCGATGGACGTTCTGGGTTCGCCGGGAAATTTGGTGATTTAGGAGAATCCGATTTCTCCGATTGCGATTTGATTCCGATAGAATTGAGCTTCATGGGGACAAATCATTTTTCCATTGAGGAAAATCTTACATTGGCTTATCCAAATTCCCCAGAACGAAGGATAAACGGATGCCGCCGAAGTTCCCCAGAAGACAGTTTAGCCGCCGTAACAGATGTGAACGTAGTTGGAAGTGGCTCTCCGGGAAGCTTACTGGACGGATTAATGTCAGAAATTTATCAGCAGTTTGCGAATAGAACCAGCCCGGGAGGGGATAGAGCCTCGAGGAGACAACGGAGAAGGGAGAAGGAAAGGCTAGGAAAGCGGAAGTTGGAAGCAGAGCATTTTGTTAAAATTGTGAATTGCTCGCCCACACCATTGCGGCCAATACAGGGCTTATGGAAGGTGTTGTCCCTCCCTCCCTCCCTCCCTCCCTTGTGTTTATGTACCCTTTTGGGACACTTCTATTTATTTTCTGTTGACATTGATTTCATTCTTGAAATGATATAGCATGGCTTCCTATTTCGTCGTGCAGGGTATCAGTGATGATATGCGCATGGATTTCTATCTTGTTGTATATGATGACATTGGTGGTATTGCCTGTCGGAGAGTTGGGGACTCCTCCGAAGGCCTCTCTAGTTATTCTCCCGTGTTTTGGACATCCAATACTACCTTCTTGGAAGCCCCATTCTCCCTGGAGGAGGAACATTTTCACGACTGCCGAATACATGTTCACCCTCTACCAGCCAATGACATTGATGAGCTAGTGCCTTCAATTGAAAACAAAAGGATCTCTCGCATTCTTCGCGTCAACTCGAGTTATGATCTAGTCCTACCAGACCTGGCTGGAAGTGTTCCGAATCCTCGGAACGTCGAGGGAAGAATATGGCAGTACAGTAACGGGACTTTTGGGTTCGGTTTCCTTAGAGATAATTTTATTATAGATTTGAAGCACATTGCTCGAAATGGTTCGATTCTGGATACTGTGGAATAA

mRNA sequence

AAAAAATATGCAAGGCGACGAAAAATGCAGTTAATTGAAAAGGTTTGTTCGTCCATCTCTTGGAACACTCGTAAATTTGAGTCGGCAGATTACCTCTGACAATCACTTATGGCATCTTCGATTCTGAGAGAATAATTCCTTATTCCAGATTGGATCTTCCCTCACGCACAGGAAACCCCGACTGGAAGTTTATTTGGGTAATTTCATTGGGAAAACTTGGGACCGAATTTTCCGAGGAAATCAATTCATAGAACTGCAAACATGGCGAATCTTAGCTCCGAAATTGACGAAATTGGTTCCTTCTCCTTCACTGACTTCCCGGAAGATGTTCAGTTATGCATCCTCTCCTTCCTCTCCCCCTCCGATATTGCATCTTTCTCTTGCACCTCGAAGAGATTCGTCTCTCTCTGCAGGAATGATAGGAAACTCTGGTTTACTATGTGCGATCGGAGATGGGGTTCCACTACTCAGATCAACAATTGGGGAAAAGGGAAAATCGCTTACAGGTTACTCTATAAAACTCTTCACCAATGGGAGAATCTCATCGGTTTTTGGCGCCGGAGTGGCTCGCCGACCATCGGCGTCTCATCGCCGCCATTGGTGTTCTTCGAATGGGGCCCTGATTTTCTTGCTGGCTCTAGGGTTTCACCGTCAAAGAACGGTACTTACGACGTGTTTAAATCTCCATTTCTATGGATGGGGCTCTCCCCGGAAGCTCAGGCCATGAGTTTCATCGACCCCGATGGACGTTCTGGGTTCGCCGGGAAATTTGGTGATTTAGGAGAATCCGATTTCTCCGATTGCGATTTGATTCCGATAGAATTGAGCTTCATGGGGACAAATCATTTTTCCATTGAGGAAAATCTTACATTGGCTTATCCAAATTCCCCAGAACGAAGGATAAACGGATGCCGCCGAAGTTCCCCAGAAGACAGTTTAGCCGCCGTAACAGATGTGAACGTAGTTGGAAGTGGCTCTCCGGGAAGCTTACTGGACGGATTAATGTCAGAAATTTATCAGCAGTTTGCGAATAGAACCAGCCCGGGAGGGGATAGAGCCTCGAGGAGACAACGGAGAAGGGAGAAGGAAAGGCTAGGAAAGCGGAAGTTGGAAGCAGAGCATTTTGTTAAAATTGTGAATTGCTCGCCCACACCATTGCGGCCAATACAGGGCTTATGGAAGGGTATCAGTGATGATATGCGCATGGATTTCTATCTTGTTGTATATGATGACATTGGTGGTATTGCCTGTCGGAGAGTTGGGGACTCCTCCGAAGGCCTCTCTAGTTATTCTCCCGTGTTTTGGACATCCAATACTACCTTCTTGGAAGCCCCATTCTCCCTGGAGGAGGAACATTTTCACGACTGCCGAATACATGTTCACCCTCTACCAGCCAATGACATTGATGAGCTAGTGCCTTCAATTGAAAACAAAAGGATCTCTCGCATTCTTCGCGTCAACTCGAGTTATGATCTAGTCCTACCAGACCTGGCTGGAAGTGTTCCGAATCCTCGGAACGTCGAGGGAAGAATATGGCAGTACAGTAACGGGACTTTTGGGTTCGGTTTCCTTAGAGATAATTTTATTATAGATTTGAAGCACATTGCTCGAAATGGTTCGATTCTGGATACTGTGGAATAA

Coding sequence (CDS)

ATGGCGAATCTTAGCTCCGAAATTGACGAAATTGGTTCCTTCTCCTTCACTGACTTCCCGGAAGATGTTCAGTTATGCATCCTCTCCTTCCTCTCCCCCTCCGATATTGCATCTTTCTCTTGCACCTCGAAGAGATTCGTCTCTCTCTGCAGGAATGATAGGAAACTCTGGTTTACTATGTGCGATCGGAGATGGGGTTCCACTACTCAGATCAACAATTGGGGAAAAGGGAAAATCGCTTACAGGTTACTCTATAAAACTCTTCACCAATGGGAGAATCTCATCGGTTTTTGGCGCCGGAGTGGCTCGCCGACCATCGGCGTCTCATCGCCGCCATTGGTGTTCTTCGAATGGGGCCCTGATTTTCTTGCTGGCTCTAGGGTTTCACCGTCAAAGAACGGTACTTACGACGTGTTTAAATCTCCATTTCTATGGATGGGGCTCTCCCCGGAAGCTCAGGCCATGAGTTTCATCGACCCCGATGGACGTTCTGGGTTCGCCGGGAAATTTGGTGATTTAGGAGAATCCGATTTCTCCGATTGCGATTTGATTCCGATAGAATTGAGCTTCATGGGGACAAATCATTTTTCCATTGAGGAAAATCTTACATTGGCTTATCCAAATTCCCCAGAACGAAGGATAAACGGATGCCGCCGAAGTTCCCCAGAAGACAGTTTAGCCGCCGTAACAGATGTGAACGTAGTTGGAAGTGGCTCTCCGGGAAGCTTACTGGACGGATTAATGTCAGAAATTTATCAGCAGTTTGCGAATAGAACCAGCCCGGGAGGGGATAGAGCCTCGAGGAGACAACGGAGAAGGGAGAAGGAAAGGCTAGGAAAGCGGAAGTTGGAAGCAGAGCATTTTGTTAAAATTGTGAATTGCTCGCCCACACCATTGCGGCCAATACAGGGCTTATGGAAGGGTATCAGTGATGATATGCGCATGGATTTCTATCTTGTTGTATATGATGACATTGGTGGTATTGCCTGTCGGAGAGTTGGGGACTCCTCCGAAGGCCTCTCTAGTTATTCTCCCGTGTTTTGGACATCCAATACTACCTTCTTGGAAGCCCCATTCTCCCTGGAGGAGGAACATTTTCACGACTGCCGAATACATGTTCACCCTCTACCAGCCAATGACATTGATGAGCTAGTGCCTTCAATTGAAAACAAAAGGATCTCTCGCATTCTTCGCGTCAACTCGAGTTATGATCTAGTCCTACCAGACCTGGCTGGAAGTGTTCCGAATCCTCGGAACGTCGAGGGAAGAATATGGCAGTACAGTAACGGGACTTTTGGGTTCGGTTTCCTTAGAGATAATTTTATTATAGATTTGAAGCACATTGCTCGAAATGGTTCGATTCTGGATACTGTGGAATAA

Protein sequence

MANLSSEIDEIGSFSFTDFPEDVQLCILSFLSPSDIASFSCTSKRFVSLCRNDRKLWFTMCDRRWGSTTQINNWGKGKIAYRLLYKTLHQWENLIGFWRRSGSPTIGVSSPPLVFFEWGPDFLAGSRVSPSKNGTYDVFKSPFLWMGLSPEAQAMSFIDPDGRSGFAGKFGDLGESDFSDCDLIPIELSFMGTNHFSIEENLTLAYPNSPERRINGCRRSSPEDSLAAVTDVNVVGSGSPGSLLDGLMSEIYQQFANRTSPGGDRASRRQRRREKERLGKRKLEAEHFVKIVNCSPTPLRPIQGLWKGISDDMRMDFYLVVYDDIGGIACRRVGDSSEGLSSYSPVFWTSNTTFLEAPFSLEEEHFHDCRIHVHPLPANDIDELVPSIENKRISRILRVNSSYDLVLPDLAGSVPNPRNVEGRIWQYSNGTFGFGFLRDNFIIDLKHIARNGSILDTVE

Homology

[Close]

BLAST of CmaCh05G001330 vs. ExPASy Swiss-Prot
Match: Q84WW1 (F-box protein At3g12350 OS=Arabidopsis thaliana OX=3702 GN=At3g12350 PE=2 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 4.2e-107
Identity = 213/447 (47.65%), Postives = 278/447 (62.19%), Query Frame = 0


Query: 16  FTDFPEDVQLCILSFLSPSDIASFSCTSKRFVSLCRNDRKLWFTMCDRRWGSTTQINNWG 75
           F + PED+QL ILS L+P++I+SF+CTSKRF SLC+ D K+W  MCD+RWG  T+I  W 
Sbjct: 8   FCEIPEDLQLRILSLLTPAEISSFACTSKRFASLCQEDGKIWHVMCDQRWGKKTKIQKWA 67

Query: 76  KGKIAYRLLYKTLHQWENLIGFWRRSGSPTIGVSSPPLVFFEWGPDFLAGSRVSPSKNGT 135
            G+I YR LYKTL   ENLIGFWR  G      SSPPLVFF+WG  F+ GSRV  + + T
Sbjct: 68  NGQIPYRHLYKTLKGLENLIGFWRLCGRANPAASSPPLVFFDWGSSFILGSRVLSTGDDT 127

Query: 136 YDVFKSPFLWMGLSPEAQAMSFIDPDGRSGFAGKFGDLGESDFSDCDLIPIELSFMGTNH 195
           Y+V K+PFL MG+SPE ++ +F+D  G         DL E + S+ +L+ ++++FMG  H
Sbjct: 128 YEVKKTPFLLMGISPEGRSENFLDLVG-GNLRSVDDDLKELEASN-NLVSVDVNFMGNGH 187

Query: 196 FSIEENLTLAYPNSPERRINGCRRSSPEDSLAAVTDVNVVGSGSPGSLLDGLMSEIYQQF 255
             +EEN      N  E      +RSS ++S   ++  N               SE+Y Q 
Sbjct: 188 IMVEENRCFTNNNRRED-----QRSSGDESDDLISSPN--------------FSEMYTQL 247

Query: 256 ANRTSPGGDRASRRQRRREKERLGKR-KLEAEHFVKIVNCSPTPLRPIQGLWKGISDDMR 315
           AN+TSPGGDR  RRQ+R+EKER   R K E EHF+K+ +CSPTP RP+QGLWKG  +   
Sbjct: 248 ANKTSPGGDR--RRQKRKEKERQASRTKWEPEHFLKVADCSPTPTRPLQGLWKGFCEG-S 307

Query: 316 MDFYLVVYDDIGGIACRRVGDSSEGLSSYS-PVFWTSNTTFLEAPFSLEEEHFHDCRIHV 375
           ++ YLV YD++GGI CR+V D S  LS Y+ PVFWT   TF+ +PFS EEE   + RIH+
Sbjct: 308 IELYLVKYDEVGGIICRKVEDLS--LSRYTPPVFWTPKHTFIRSPFSAEEELLLNSRIHI 367

Query: 376 HPLPANDIDELVPSIENKRISRILRVNSSYDLVLPDLAGSVPNPRNVEGRIWQYSNGTFG 435
            P            +    +S +L + SS DLVLP   G+       EGR+W Y NGTFG
Sbjct: 368 SPF---------AEVHENVVSGMLYMKSSCDLVLPGEPGNGIGFLRGEGRVWLYDNGTFG 419

Query: 436 FGFLRDNFIIDLKHIA-RNGSILDTVE 460
           FGFLRD FIIDLK +A  +G + D VE
Sbjct: 428 FGFLRDQFIIDLKRVALEDGCLADEVE 419

[Close]

BLAST of CmaCh05G001330 vs. TAIR 10
Match: AT3G12350.1 (F-box family protein )

HSP 1 Score: 389.8 bits (1000), Expect = 3.0e-108
Identity = 213/447 (47.65%), Postives = 278/447 (62.19%), Query Frame = 0


Query: 16  FTDFPEDVQLCILSFLSPSDIASFSCTSKRFVSLCRNDRKLWFTMCDRRWGSTTQINNWG 75
           F + PED+QL ILS L+P++I+SF+CTSKRF SLC+ D K+W  MCD+RWG  T+I  W 
Sbjct: 8   FCEIPEDLQLRILSLLTPAEISSFACTSKRFASLCQEDGKIWHVMCDQRWGKKTKIQKWA 67

Query: 76  KGKIAYRLLYKTLHQWENLIGFWRRSGSPTIGVSSPPLVFFEWGPDFLAGSRVSPSKNGT 135
            G+I YR LYKTL   ENLIGFWR  G      SSPPLVFF+WG  F+ GSRV  + + T
Sbjct: 68  NGQIPYRHLYKTLKGLENLIGFWRLCGRANPAASSPPLVFFDWGSSFILGSRVLSTGDDT 127

Query: 136 YDVFKSPFLWMGLSPEAQAMSFIDPDGRSGFAGKFGDLGESDFSDCDLIPIELSFMGTNH 195
           Y+V K+PFL MG+SPE ++ +F+D  G         DL E + S+ +L+ ++++FMG  H
Sbjct: 128 YEVKKTPFLLMGISPEGRSENFLDLVG-GNLRSVDDDLKELEASN-NLVSVDVNFMGNGH 187

Query: 196 FSIEENLTLAYPNSPERRINGCRRSSPEDSLAAVTDVNVVGSGSPGSLLDGLMSEIYQQF 255
             +EEN      N  E      +RSS ++S   ++  N               SE+Y Q 
Sbjct: 188 IMVEENRCFTNNNRRED-----QRSSGDESDDLISSPN--------------FSEMYTQL 247

Query: 256 ANRTSPGGDRASRRQRRREKERLGKR-KLEAEHFVKIVNCSPTPLRPIQGLWKGISDDMR 315
           AN+TSPGGDR  RRQ+R+EKER   R K E EHF+K+ +CSPTP RP+QGLWKG  +   
Sbjct: 248 ANKTSPGGDR--RRQKRKEKERQASRTKWEPEHFLKVADCSPTPTRPLQGLWKGFCEG-S 307

Query: 316 MDFYLVVYDDIGGIACRRVGDSSEGLSSYS-PVFWTSNTTFLEAPFSLEEEHFHDCRIHV 375
           ++ YLV YD++GGI CR+V D S  LS Y+ PVFWT   TF+ +PFS EEE   + RIH+
Sbjct: 308 IELYLVKYDEVGGIICRKVEDLS--LSRYTPPVFWTPKHTFIRSPFSAEEELLLNSRIHI 367

Query: 376 HPLPANDIDELVPSIENKRISRILRVNSSYDLVLPDLAGSVPNPRNVEGRIWQYSNGTFG 435
            P            +    +S +L + SS DLVLP   G+       EGR+W Y NGTFG
Sbjct: 368 SPF---------AEVHENVVSGMLYMKSSCDLVLPGEPGNGIGFLRGEGRVWLYDNGTFG 419

Query: 436 FGFLRDNFIIDLKHIA-RNGSILDTVE 460
           FGFLRD FIIDLK +A  +G + D VE
Sbjct: 428 FGFLRDQFIIDLKRVALEDGCLADEVE 419

[Close]

BLAST of CmaCh05G001330 vs. TAIR 10
Match: AT3G12350.2 (F-box family protein )

HSP 1 Score: 268.5 bits (685), Expect = 1.0e-71
Identity = 142/293 (48.46%), Postives = 187/293 (63.82%), Query Frame = 0


Query: 16  FTDFPEDVQLCILSFLSPSDIASFSCTSKRFVSLCRNDRKLWFTMCDRRWGSTTQINNWG 75
           F + PED+QL ILS L+P++I+SF+CTSKRF SLC+ D K+W  MCD+RWG  T+I  W 
Sbjct: 8   FCEIPEDLQLRILSLLTPAEISSFACTSKRFASLCQEDGKIWHVMCDQRWGKKTKIQKWA 67

Query: 76  KGKIAYRLLYKTLHQWENLIGFWRRSGSPTIGVSSPPLVFFEWGPDFLAGSRVSPSKNGT 135
            G+I YR LYKTL   ENLIGFWR  G      SSPPLVFF+WG  F+ GSRV  + + T
Sbjct: 68  NGQIPYRHLYKTLKGLENLIGFWRLCGRANPAASSPPLVFFDWGSSFILGSRVLSTGDDT 127

Query: 136 YDVFKSPFLWMGLSPEAQAMSFIDPDGRSGFAGKFGDLGESDFSDCDLIPIELSFMGTNH 195
           Y+V K+PFL MG+SPE ++ +F+D  G         DL E + S+ +L+ ++++FMG  H
Sbjct: 128 YEVKKTPFLLMGISPEGRSENFLDLVG-GNLRSVDDDLKELEASN-NLVSVDVNFMGNGH 187

Query: 196 FSIEENLTLAYPNSPERRINGCRRSSPEDSLAAVTDVNVVGSGSPGSLLDGLMSEIYQQF 255
             +EEN      N  E      +RSS ++S   ++  N               SE+Y Q 
Sbjct: 188 IMVEENRCFTNNNRRED-----QRSSGDESDDLISSPN--------------FSEMYTQL 247

Query: 256 ANRTSPGGDRASRRQRRREKERLGKR-KLEAEHFVKIVNCSPTPLRPIQGLWK 308
           AN+TSPGGDR  RRQ+R+EKER   R K E EHF+K+ +CSPTP RP+QGLWK
Sbjct: 248 ANKTSPGGDR--RRQKRKEKERQASRTKWEPEHFLKVADCSPTPTRPLQGLWK 277

The following BLAST results are available for this feature:

BLAST of CmaCh05G001330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WW1	4.2e-107	47.65	F-box protein At3g12350 OS=Arabidopsis thaliana OX=3702 GN=At3g12350 PE=2 SV=1	[more]

BLAST of CmaCh05G001330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12350.1	3.0e-108	47.65	F-box family protein	[more]
AT3G12350.2	1.0e-71	48.46	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 19..60 e-value: 1.4E-5 score: 34.5
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 14..55 e-value: 1.2E-7 score: 31.4
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 13..60 score: 11.564033
None	No IPR available	GENE3D	1.20.1280.50		coord: 5..93 e-value: 2.7E-9 score: 38.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..277
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 10..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G001330.1	CmaCh05G001330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding