CmaCh05G001070 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G001070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Arabinogalactan peptide
Location	Cma_Chr05: 460870 .. 462424 (-)
RNA-Seq Expression	CmaCh05G001070
Synteny	CmaCh05G001070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTCTTCTCTCGAAAGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGTCGGGAAGGAGATTCCGGTTAAGAATCCAAAACCGGAGAAGAAATCGGCGGCGGAGAGCAAGGGAGCTCCGATTGACGGTTCCTATCATTCTCACTTGTACTGGCGATGAGGATGGCGATGAGGATGGCGATTCCATCAATTGTGTTAGTAATTAAATGCTCATTATTTTGTTTCCTCTTACTTATTGATAAGTTAATTTAATTTAATTAGTTAAATAATATATCATCTGAAAGGAAAAAAAAAAAATCAGAAAAAATATCTGTAATGTAAGGTTGATTCCTAGACGGGAAGGAAGTTTCTGGAACGATATTCAAAAACCACACAAATCAACTAGCCAATCACTCTCGCCTGTCATTTCTTAACCACACTGCGCTGTCTCTATATCTTGGGCCCCACAGTCCTAACTATATTTGTCCATTATTGACCTTCACAGTTCACAGCCTTCGTTTGTGTAGGCCCCACCCATCATTTTCCTTTTCTTTTCTTTTATATTATTAACACATTTTCGCTGTTTCAGTGGCTTTCCGTTTATTTCTTCCTCATTGATTTCGTCTTTTCGCCTTTTGGCGTATCTTCACGCTCCAATCCACGCCGTCCGATTGTTTTCGTATATACCACGCGCCATCAATTTTGAACCCCCATGCCCAAGAATCTTCCACTTTTGCAACGGACCGGAGAATGTTAAGAATGAAACGACACCGTTGTTTAATTTGAAGAGTGAAATTTTAAATCCTATTATTCATATATTAATTAAATTTTAGGTTAAGATTAAACTAAATAACCACTATTTTTAATTACAACTTTAAAATGTTTCAATTTTTTATATATTTACCAATTTTTAGTATAACTATTTTAAGATGACTTTTAATTCTAATAAAAATAATAAATAATTTGCTCCAATTGTGGAACTTCGAACTGGAATAAACCATAAATAGAATAAATCTCAAAAGTTTAACTGAAAAAGAAAAAAAATGAAATTTAAAACAAAAAATTACATTTTATTTAAACGTTGTGCGGTGGAAAGACGCATATATTCCCGTTGATGATCTGTGGGAAATAGGGGACCACGCCAAAATATTAGCTGGCATTCAACCAATCGCCAGCTTGCTTGCCCCCTGCCCGAATACCTGCCCGACTTTCTCTCTCTCCCGTTTTTCGCTCTCTTTCTCTCTATATATATCTCCTTCCACTATTTTCATTTCTCATTTACAATTCAAAGCTAAAGGTCTTCTCTCAATCTCTTTCGATCCCTCTCTTCGTCTCCTTCCTCTCGCCGGAACCACCCTAACAAGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAGCTTCTCTCGTGGCTCTCATTGCCATCATCTTCGCCGTCGCCTCCGTCGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACCTCCATTGCTCCGTCATTCGTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

mRNA sequence

ATGAGATTCTTCTCTCGAAAGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGTCGGGAAGGAGATTCCGGTTAAGAATCCAAAACCGGAGAAGAAATCGGCGGCGGAGAGCAAGGGAGCTCCGATTGACGGTTCCTATCATTCTCACTTGTCTTCTCTCAATCTCTTTCGATCCCTCTCTTCGTCTCCTTCCTCTCGCCGGAACCACCCTAACAAGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAGCTTCTCTCGTGGCTCTCATTGCCATCATCTTCGCCGTCGCCTCCGTCGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACCTCCATTGCTCCGTCATTCGTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

Coding sequence (CDS)

ATGAGATTCTTCTCTCGAAAGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGTCGGGAAGGAGATTCCGGTTAAGAATCCAAAACCGGAGAAGAAATCGGCGGCGGAGAGCAAGGGAGCTCCGATTGACGGTTCCTATCATTCTCACTTGTCTTCTCTCAATCTCTTTCGATCCCTCTCTTCGTCTCCTTCCTCTCGCCGGAACCACCCTAACAAGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAGCTTCTCTCGTGGCTCTCATTGCCATCATCTTCGCCGTCGCCTCCGTCGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACCTCCATTGCTCCGTCATTCGTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA

Protein sequence

MRFFSRKFRCCFSSSQVSAVGKEIPVKNPKPEKKSAAESKGAPIDGSYHSHLSSLNLFRSLSSSPSSRRNHPNKQISESMAGVSQASLVALIAIIFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI

Homology

[Close]

BLAST of CmaCh05G001070 vs. ExPASy Swiss-Prot
Match: Q9LYF6 (Arabinogalactan protein 15 OS=Arabidopsis thaliana OX=3702 GN=AGP15 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-05
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 83  VSQASLVALIAIIFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI 142
           +S+AS+V L+ +I +V + A +EAPAPSP S +++I+ SFVSA VAA  AL FGS LRI
Sbjct: 3   ISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

[Close]

BLAST of CmaCh05G001070 vs. TAIR 10
Match: AT5G11740.1 (arabinogalactan protein 15 )

HSP 1 Score: 51.2 bits (121), Expect = 7.8e-07
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 83  VSQASLVALIAIIFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI 142
           +S+AS+V L+ +I +V + A +EAPAPSP S +++I+ SFVSA VAA  AL FGS LRI
Sbjct: 3   ISKASIVVLMMVIISVVASAQSEAPAPSPTSGSSAISASFVSAGVAAVAALVFGSALRI 61

The following BLAST results are available for this feature:

BLAST of CmaCh05G001070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYF6	1.1e-05	55.93	Arabinogalactan protein 15 OS=Arabidopsis thaliana OX=3702 GN=AGP15 PE=1 SV=1	[more]

BLAST of CmaCh05G001070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11740.1	7.8e-07	55.93	arabinogalactan protein 15	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G001070.1	CmaCh05G001070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane