CmaCh05G000980 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G000980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Homeobox domain-containing protein
Location	Cma_Chr05: 421967 .. 423372 (+)
RNA-Seq Expression	CmaCh05G000980
Synteny	CmaCh05G000980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTGAGAAGACTTGGCAGGAACAGAAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGACATGAGCAAGACAAAGGAGATGGCACAGAGAGGAAGGGCATGGGCCCTTTAAAGCCTGTAACAAAGAGTGAGTGGCTCTGCACCCAAGGGCAAATCTCTCTCTCTCTCTCTCTCTCTACCCACCCCCTGGTTTTCTCTTGTGCGGCTGTTACTTCTTTCTATCTTTATCTAGTGGGTCCATTTCCTCCATCTCCACCGTCATGCAGAGTTCTCTTGTGGCCTCTCGACTCTCTTTCTTCCTTTTCATGGTTCTCTGAGATGGGTGTCATTCATTTTCCTGAGCTGTACGTATTTTAGCTTTAATGTTTGTGGCCAGAGATTGTGATTATACATCTCCTTGGTGTTCAATACTCCAAACTTAAGCTTCTCGGGGTTTGGACTCTTGAGGCTATTCCATTTTCCTTTATTCATGCAAAATTTTGTATCACTTTTTTCTACCATCGGCTTTATCTTGATTTTCACCGTAGGCACCCTTTTCTGGAGAAACAAGAAACCAATTTCTTTTAGTCTTCTCCTTTTGCCTTTTTAGGCTGTCATTGATCTCCTGTGTGTGAAGAAACATGAATTATGTAACCACTGTAGCAATTTTTTTGTGTTTTATACTTTGCAACCTTGAAGTTCTTCGCTAAGCTATCACATCCATTTATTTGCCTAGAAATTCAGGACCACAGTGTACTTTTCAGAAGATCAAGTGTGGGGCTTTCACGTTAAGTTTCTCATCCTATTTTGGATGATAAAGATTTATCAAGTGGAAGGTTGGTTTCTTTGTCATCTCATGTAATCAGTGCCCAATCTTTATGCTTTGGCTTGTGGTTTACAGAGTGAGTTTTGATGTGGACCACTGTTTCCTTCACTCTTGTATGTTGTTATGCTTGTTCCCTCTATTGCATTGTGTCGTAATAATTTGTGAAGCTTCCAGGTATGGCTTGTCATTTTCTGTAGCATGCTTTTCATTCTTGTGGCAATTGGGTCTAGATATGCATGCTACCACTGCTAATTTCCCTTTCAACATTGAAGTAAATTCTGGTCTAATGTGATTTTGGATATCTGGATTTAGCTGGAAGTGCTTCTCCTTATCCTTCGAACTGGGAAAGTTTATTTTTGTTTGGTACAAACAACTTGATATTGCATTGAACTTAGAAATGCTGTTGGAATTGCAGCTTAAACAGTTGGAAAATGACTTGATGAATGCTCTCAGGTGGATTTGGCTAAGCCCAAATGACTTCACTTTCAGAACCCAGTCGATATGTCCAATTAATTTGACCGTAATGATCCGAGCCATATTGCAGCTGAATTTCCTATCCTTTTGA

mRNA sequence

ATGGTGCTGAGAAGACTTGGCAGGAACAGAAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGACATGAGCAAGACAAAGGAGATGGCACAGAGAGGAAGGGCATGGGCCCTTTAAAGCCTGTAACAAAGATGGGTCCATTTCCTCCATCTCCACCGTCATGCAGAGTTCTCTTGTGGCCTCTCGACTCTCTTTCTTCCTTTTCATGGTTCTCTGAGATGGGTGTCATTCATTTTCCTGAGCTATTTATCAAGTGGAAGCTTAAACAGTTGGAAAATGACTTGATGAATGCTCTCAGGTGGATTTGGCTAAGCCCAAATGACTTCACTTTCAGAACCCAGTCGATATGTCCAATTAATTTGACCGTAATGATCCGAGCCATATTGCAGCTGAATTTCCTATCCTTTTGA

Coding sequence (CDS)

ATGGTGCTGAGAAGACTTGGCAGGAACAGAAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGACATGAGCAAGACAAAGGAGATGGCACAGAGAGGAAGGGCATGGGCCCTTTAAAGCCTGTAACAAAGATGGGTCCATTTCCTCCATCTCCACCGTCATGCAGAGTTCTCTTGTGGCCTCTCGACTCTCTTTCTTCCTTTTCATGGTTCTCTGAGATGGGTGTCATTCATTTTCCTGAGCTATTTATCAAGTGGAAGCTTAAACAGTTGGAAAATGACTTGATGAATGCTCTCAGGTGGATTTGGCTAAGCCCAAATGACTTCACTTTCAGAACCCAGTCGATATGTCCAATTAATTTGACCGTAATGATCCGAGCCATATTGCAGCTGAATTTCCTATCCTTTTGA

Protein sequence

MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTKMGPFPPSPPSCRVLLWPLDSLSSFSWFSEMGVIHFPELFIKWKLKQLENDLMNALRWIWLSPNDFTFRTQSICPINLTVMIRAILQLNFLSF

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh05G000980 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G000980 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G000980.1	CmaCh05G000980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding