CmaCh05G000900 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G000900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Glutaredoxin
Location	Cma_Chr05: 389165 .. 389560 (+)
RNA-Seq Expression	CmaCh05G000900
Synteny	CmaCh05G000900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCTCTGCGCAAACGACGTTGTATCCTCCGAACTTCCTCCTTCTCCGACCTCCTCCTCCTCCTTATCCATCGACGTCGATGAGTCGTCTGAAGCTCGGATCCGGCGGTTGATTACAGAGCATCCGGTGATCATATTCAGCCGCTCCTCTTGCAGCATGTGCCACGTCATGAAGACTCTTCTCGCCATCATCGGCGTCCATCCTACAGTTATCGAGCTTAATGATCACGACGAAATCGCCGCCGTTCCTTCTTCGTCTTTTGTTCGGGATAGTTCGGCGCCGGCGGTTTTCATCGGCGGGGCTAGCTTCGGCGGCTTGGAGACTCTGGTCGCTCTCCATCTTAGTGGCCATCTCGTTCCTAAACTTATCGAAGTTGGAGCTCTCGCGGTATGA

mRNA sequence

ATGAACCTCTGCGCAAACGACGTTGTATCCTCCGAACTTCCTCCTTCTCCGACCTCCTCCTCCTCCTTATCCATCGACGTCGATGAGTCGTCTGAAGCTCGGATCCGGCGGTTGATTACAGAGCATCCGGTGATCATATTCAGCCGCTCCTCTTGCAGCATGTGCCACGTCATGAAGACTCTTCTCGCCATCATCGGCGTCCATCCTACAGTTATCGAGCTTAATGATCACGACGAAATCGCCGCCGTTCCTTCTTCGTCTTTTGTTCGGGATAGTTCGGCGCCGGCGGTTTTCATCGGCGGGGCTAGCTTCGGCGGCTTGGAGACTCTGGTCGCTCTCCATCTTAGTGGCCATCTCGTTCCTAAACTTATCGAAGTTGGAGCTCTCGCGGTATGA

Coding sequence (CDS)

ATGAACCTCTGCGCAAACGACGTTGTATCCTCCGAACTTCCTCCTTCTCCGACCTCCTCCTCCTCCTTATCCATCGACGTCGATGAGTCGTCTGAAGCTCGGATCCGGCGGTTGATTACAGAGCATCCGGTGATCATATTCAGCCGCTCCTCTTGCAGCATGTGCCACGTCATGAAGACTCTTCTCGCCATCATCGGCGTCCATCCTACAGTTATCGAGCTTAATGATCACGACGAAATCGCCGCCGTTCCTTCTTCGTCTTTTGTTCGGGATAGTTCGGCGCCGGCGGTTTTCATCGGCGGGGCTAGCTTCGGCGGCTTGGAGACTCTGGTCGCTCTCCATCTTAGTGGCCATCTCGTTCCTAAACTTATCGAAGTTGGAGCTCTCGCGGTATGA

Protein sequence

MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLVPKLIEVGALAV

Homology

[Close]

BLAST of CmaCh05G000900 vs. ExPASy Swiss-Prot
Match: Q8L9S3 (Glutaredoxin-C6 OS=Arabidopsis thaliana OX=3702 GN=GRXC6 PE=2 SV=2)

HSP 1 Score: 147.9 bits (372), Expect = 8.0e-35
Identity = 88/135 (65.19%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 5   ANDVVSSEL-PPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKTLLA 64
           +NDVV  +L PPS TSS+SLSID +ES+EA+IRRLI+EHPVIIFSRSSC MCHVMK LLA
Sbjct: 11  SNDVVRLDLTPPSQTSSTSLSIDEEESTEAKIRRLISEHPVIIFSRSSCCMCHVMKRLLA 70

Query: 65  IIGVHPTVIELNDHDEIAAVPSSSFVRDSSA-------PAVFIGGASFGGLETLVALHLS 124
            IGV PTVIEL+DH E++++P++     S         PAVFIG    GGLE+LVALHLS
Sbjct: 71  TIGVIPTVIELDDH-EVSSLPTALQDEYSGGVSVVGPPPAVFIGRECVGGLESLVALHLS 130

Query: 125 GHLVPKLIEVGALAV 132
           G LVPKL++VGAL V
Sbjct: 131 GQLVPKLVQVGALWV 144

[Close]

BLAST of CmaCh05G000900 vs. ExPASy Swiss-Prot
Match: Q29PZ1 (Glutaredoxin-C10 OS=Arabidopsis thaliana OX=3702 GN=GRXC10 PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.9e-29
Identity = 77/144 (53.47%), Postives = 101/144 (70.14%), Query Frame = 0


Query: 4   CANDVVSSEL-----------PPSP------TSSSSLSIDVDESSEARIRRLITEHPVII 63
           C+ND V+ +L           PP+P      T+S+SLS D +E+SE++I RLI+EHPVII
Sbjct: 10  CSNDAVTLDLTVHPPPPPPLPPPAPSTVSSSTASTSLSFDEEETSESKIGRLISEHPVII 69

Query: 64  FSR-SSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFG 123
           F+R SSC MCHVMK LL+ +GVHPTVIE++D  EIA      ++   +AP +FIGG   G
Sbjct: 70  FTRFSSCCMCHVMKKLLSTVGVHPTVIEIDD-GEIA------YLAVEAAPVLFIGGTCVG 129

Query: 124 GLETLVALHLSGHLVPKLIEVGAL 130
           G E+LVALHLSG L+P+L+EVGAL
Sbjct: 130 GFESLVALHLSGQLIPRLVEVGAL 146

[Close]

BLAST of CmaCh05G000900 vs. ExPASy Swiss-Prot
Match: Q0DK35 (Glutaredoxin-C7 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC7 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.9e-21
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 29  ESSEARIRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPSSSF 88
           E    RI RL+ E PV+IF+R  C MCHVM+ LLA +G H TVIEL   DE A   ++S 
Sbjct: 39  EQPAERIGRLVRESPVVIFARRGCCMCHVMRRLLAAVGAHATVIEL---DEAAEEAAASA 98

Query: 89  VRDSSAPAVFIGGASFGGLETLVALHLSGHLVPKLIEVGAL 130
              ++ PA+F+GGA  GGL+ L+ LHLSG LVP+L EVGAL
Sbjct: 99  AAAAAVPALFVGGAPVGGLDGLMGLHLSGRLVPRLREVGAL 136

[Close]

BLAST of CmaCh05G000900 vs. ExPASy Swiss-Prot
Match: Q5SMY5 (Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.9e-18
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 22  SLSID---VDESSEARIRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELND-- 81
           SL+ID    +E+   R+ RL+ E PV++F+R  C M HVM+ LLA +G H TVIEL    
Sbjct: 15  SLTIDPAGEEEAPAERVGRLVRESPVVVFARRGCYMAHVMRRLLAAVGAHATVIELEGGA 74

Query: 82  -HDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLVPKLIEVGAL 130
             +E AA+        ++ PA+F+GG   GGLE L+ LHLSG LVP+L EVGAL
Sbjct: 75  AEEEEAALGGG-----AALPALFVGGDPVGGLEGLMGLHLSGRLVPRLREVGAL 123

[Close]

BLAST of CmaCh05G000900 vs. ExPASy Swiss-Prot
Match: P0C291 (Monothiol glutaredoxin-S9 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS9 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-14
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 32  EARIRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPSSSFVRD 91
           E  +RR + E PV++  RS C + HV+K LL  +GV+P V E+    E+A V +      
Sbjct: 35  EEEVRRAVAECPVVVVGRSGCCLSHVVKRLLQGLGVNPAVHEVAGEAELAGVVAGG--GG 94

Query: 92  SSAPAVFIGGASFGGLETLVALHLSGHLVPKLIEVGAL 130
            + PAVF+GG   GGL+ L+A+H+SG LVP L E GAL
Sbjct: 95  VALPAVFVGGRLLGGLDRLMAVHISGELVPILKEAGAL 130

[Close]

BLAST of CmaCh05G000900 vs. TAIR 10
Match: AT4G33040.1 (Thioredoxin superfamily protein )

HSP 1 Score: 147.9 bits (372), Expect = 5.7e-36
Identity = 88/135 (65.19%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 5   ANDVVSSEL-PPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKTLLA 64
           +NDVV  +L PPS TSS+SLSID +ES+EA+IRRLI+EHPVIIFSRSSC MCHVMK LLA
Sbjct: 11  SNDVVRLDLTPPSQTSSTSLSIDEEESTEAKIRRLISEHPVIIFSRSSCCMCHVMKRLLA 70

Query: 65  IIGVHPTVIELNDHDEIAAVPSSSFVRDSSA-------PAVFIGGASFGGLETLVALHLS 124
            IGV PTVIEL+DH E++++P++     S         PAVFIG    GGLE+LVALHLS
Sbjct: 71  TIGVIPTVIELDDH-EVSSLPTALQDEYSGGVSVVGPPPAVFIGRECVGGLESLVALHLS 130

Query: 125 GHLVPKLIEVGALAV 132
           G LVPKL++VGAL V
Sbjct: 131 GQLVPKLVQVGALWV 144

[Close]

BLAST of CmaCh05G000900 vs. TAIR 10
Match: AT5G11930.1 (Thioredoxin superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-30
Identity = 77/144 (53.47%), Postives = 101/144 (70.14%), Query Frame = 0


Query: 4   CANDVVSSEL-----------PPSP------TSSSSLSIDVDESSEARIRRLITEHPVII 63
           C+ND V+ +L           PP+P      T+S+SLS D +E+SE++I RLI+EHPVII
Sbjct: 10  CSNDAVTLDLTVHPPPPPPLPPPAPSTVSSSTASTSLSFDEEETSESKIGRLISEHPVII 69

Query: 64  FSR-SSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFG 123
           F+R SSC MCHVMK LL+ +GVHPTVIE++D  EIA      ++   +AP +FIGG   G
Sbjct: 70  FTRFSSCCMCHVMKKLLSTVGVHPTVIEIDD-GEIA------YLAVEAAPVLFIGGTCVG 129

Query: 124 GLETLVALHLSGHLVPKLIEVGAL 130
           G E+LVALHLSG L+P+L+EVGAL
Sbjct: 130 GFESLVALHLSGQLIPRLVEVGAL 146

[Close]

BLAST of CmaCh05G000900 vs. TAIR 10
Match: AT1G28480.1 (Thioredoxin superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-15
Identity = 46/113 (40.71%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 23  LSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELND--HDEI 82
           LS+    + E R+R ++ E+ VI+  R  C MCHV++ LL  +GV+P V+E+++   DE+
Sbjct: 24  LSLKTQGNGE-RVRMVVEENAVIVIGRRGCCMCHVVRRLLLGLGVNPAVLEIDEEREDEV 83

Query: 83  AAVPSSSFVRDSSA----PAVFIGGASFGGLETLVALHLSGHLVPKLIEVGAL 130
            +   +  V+        PAV++GG  FGGL+ ++A H+SG LVP L EVGAL
Sbjct: 84  LSELENIGVQGGGGTVKLPAVYVGGRLFGGLDRVMATHISGELVPILKEVGAL 135

[Close]

BLAST of CmaCh05G000900 vs. TAIR 10
Match: AT5G18600.1 (Thioredoxin superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 5.2e-13
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 35  IRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSS- 94
           I +++ E PV+I+S+SSC M H +KTLL   G +P V EL++      +  +      S 
Sbjct: 4   ITKMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLGCSP 63

Query: 95  -APAVFIGGASFGGLETLVALHLSGHLVPKLIEVGALAV 132
             P VFIGG   GG   +++LHL+G L+P L   GAL V
Sbjct: 64  AVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGALWV 102

[Close]

BLAST of CmaCh05G000900 vs. TAIR 10
Match: AT4G15680.1 (Thioredoxin superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12
Identity = 38/98 (38.78%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 34  RIRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPS--SSFVRD 93
           +++++I+E  V+IFS++SC M H +KTL    GV+PT+ EL++ +    +    +     
Sbjct: 3   KLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCS 62

Query: 94  SSAPAVFIGGASFGGLETLVALHLSGHLVPKLIEVGAL 130
            + P VFIGG   GG   +++LHL+  LVP L  VGAL
Sbjct: 63  PTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGAL 100

The following BLAST results are available for this feature:

BLAST of CmaCh05G000900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9S3	8.0e-35	65.19	Glutaredoxin-C6 OS=Arabidopsis thaliana OX=3702 GN=GRXC6 PE=2 SV=2	[more]
Q29PZ1	2.9e-29	53.47	Glutaredoxin-C10 OS=Arabidopsis thaliana OX=3702 GN=GRXC10 PE=2 SV=1	[more]
Q0DK35	3.9e-21	54.46	Glutaredoxin-C7 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC7 PE=3 SV=1	[more]
Q5SMY5	8.9e-18	48.25	Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS2 PE=2...	[more]
P0C291	1.6e-14	44.90	Monothiol glutaredoxin-S9 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS9 PE=3...	[more]

BLAST of CmaCh05G000900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33040.1	5.7e-36	65.19	Thioredoxin superfamily protein	[more]
AT5G11930.1	2.1e-30	53.47	Thioredoxin superfamily protein	[more]
AT1G28480.1	1.5e-15	40.71	Thioredoxin superfamily protein	[more]
AT5G18600.1	5.2e-13	40.40	Thioredoxin superfamily protein	[more]
AT4G15680.1	1.5e-12	38.78	Thioredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014025	Glutaredoxin subgroup	PRINTS	PR00160	GLUTAREDOXIN	coord: 44..62 score: 35.09 coord: 101..114 score: 31.55 coord: 87..100 score: 26.19
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 25..131 e-value: 5.2E-23 score: 82.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR10168:SF56	GLUTAREDOXIN-C6	coord: 7..130
None	No IPR available	PROSITE	PS51354	GLUTAREDOXIN_2	coord: 32..130 score: 18.768568
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 44..101 e-value: 6.7E-7 score: 29.4
IPR011905	Glutaredoxin-like, plant II	TIGRFAM	TIGR02189	TIGR02189	coord: 35..130 e-value: 7.1E-31 score: 104.1
IPR011905	Glutaredoxin-like, plant II	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 7..130
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 32..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G000900.1	CmaCh05G000900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0097573	glutathione oxidoreductase activity