Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCACACTGGAACAGCTCCTGCCCGACCCCTCTGAACAGATTCGCTATGTGCAATGTGGTCTTTGTAGCACCATATTGTTGGTAGGATCATATTACAATAAAATTATATATTGTAGTTTTGTTTGGAAGTGTTGAATTAACAATAGTATTGTATTATACAAACAGGTAAATGTGCCATACAGCAACTTGTCGATGGTGGTGAGCGTAAGATGCGGCAACTGCACTGGCCTCCTCTCCGTCAACATGGCCAAGCCCTCTTTTATCCCTTTTGATCTTCTCACTTCCCTCTCTCACAACTTGGTTGGTACCCTCTTCATTTCATTTGGTTTCCCTCCAAAAACATGTTCTTAATCATTCAAAATTGACAGCCAAAGGAGCCTTTCCAAGACTTGAACGTCCAGAAACACTTGTGCTTGGACAACCTCAACAACACGTCCGACCTCCTAACCTCGTACCACAACATTATCCAAAATCACGAAGACGATGATGACGATGCCATCATCATTCCACCCACTCCAGTTGTTAACAAGCGTACGCCTCCATGGACAATATAGTATTATCATTATTATTTGAATTTTATCTGGCTTTTGATTGTGGCCTCTGATAATTATTAGCCCCGGAGAAGAAACAGCGAGCCCCGTCAGCTTATAACCAATTCATCAAGTAAGATAACAATAATAATAATAGTATTGATAAGGAAAAAAAGAATGGTATTTCATGCATATGGTGCGTGCAACCAACGCAGGGAGGAGATTCGGAGGCTGAAAGCGGAGAACCCGGGAATGGCGCATAAGGAGGCATTCAAGACAGCGGCAAAGAATGTAAGAAAGAAGCATTGTTTGTTTGTTGATTAATTAATTAATGTTTGAGAATTGGTTTGGTTGTTGCATGCAGTGGGCTCATCTCCCTCCAGTCAATGGCGAAGGAGATCACGTGGGGAGGAAGAGAAACGTAATGTGA
mRNA sequence
ATGTCGTCCACACTGGAACAGCTCCTGCCCGACCCCTCTGAACAGATTCGCTATGTGCAATGTGGTCTTTGTAGCACCATATTGTTGGTAAATGTGCCATACAGCAACTTGTCGATGGTGGTGAGCGTAAGATGCGGCAACTGCACTGGCCTCCTCTCCGTCAACATGGCCAAGCCCTCTTTTATCCCTTTTGATCTTCTCACTTCCCTCTCTCACAACTTGCCAAAGGAGCCTTTCCAAGACTTGAACGTCCAGAAACACTTGTGCTTGGACAACCTCAACAACACGTCCGACCTCCTAACCTCGTACCACAACATTATCCAAAATCACGAAGACGATGATGACGATGCCATCATCATTCCACCCACTCCAGTTGTTAACAAGCCCCCGGAGAAGAAACAGCGAGCCCCGTCAGCTTATAACCAATTCATCAAGGAGGAGATTCGGAGGCTGAAAGCGGAGAACCCGGGAATGGCGCATAAGGAGGCATTCAAGACAGCGGCAAAGAATTGGGCTCATCTCCCTCCAGTCAATGGCGAAGGAGATCACGTGGGGAGGAAGAGAAACGTAATGTGA
Coding sequence (CDS)
ATGTCGTCCACACTGGAACAGCTCCTGCCCGACCCCTCTGAACAGATTCGCTATGTGCAATGTGGTCTTTGTAGCACCATATTGTTGGTAAATGTGCCATACAGCAACTTGTCGATGGTGGTGAGCGTAAGATGCGGCAACTGCACTGGCCTCCTCTCCGTCAACATGGCCAAGCCCTCTTTTATCCCTTTTGATCTTCTCACTTCCCTCTCTCACAACTTGCCAAAGGAGCCTTTCCAAGACTTGAACGTCCAGAAACACTTGTGCTTGGACAACCTCAACAACACGTCCGACCTCCTAACCTCGTACCACAACATTATCCAAAATCACGAAGACGATGATGACGATGCCATCATCATTCCACCCACTCCAGTTGTTAACAAGCCCCCGGAGAAGAAACAGCGAGCCCCGTCAGCTTATAACCAATTCATCAAGGAGGAGATTCGGAGGCTGAAAGCGGAGAACCCGGGAATGGCGCATAAGGAGGCATTCAAGACAGCGGCAAAGAATTGGGCTCATCTCCCTCCAGTCAATGGCGAAGGAGATCACGTGGGGAGGAAGAGAAACGTAATGTGA
Protein sequence
MSSTLEQLLPDPSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSFIPFDLLTSLSHNLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIIIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVNGEGDHVGRKRNVM
Homology
BLAST of CmaCh05G000220 vs. ExPASy Swiss-Prot
Match:
Q9LDT3 (Axial regulator YABBY 4 OS=Arabidopsis thaliana OX=3702 GN=YAB4 PE=1 SV=2)
HSP 1 Score: 171.0 bits (432), Expect = 1.3e-41
Identity = 95/180 (52.78%), Postives = 125/180 (69.44%), Query Frame = 0
Query: 1 MSSTLEQLLPDPSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPS 60
M++TL L P QI +VQCG C+TILLV+VP+++LSMVV+VRCG+CT LLSVN+ K S
Sbjct: 7 MTTTLNHLFDLPG-QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKAS 66
Query: 61 FIPFDLLTSLSHNLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIII 120
FIP LL SLSH L + +++ + + + S ++ + +++D+D +
Sbjct: 67 FIPLHLLASLSH-LDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRV 126
Query: 121 PPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVNGE 180
VVNKPPEK+QRAPSAYN FIKEEIRRLKA+NP MAHKEAF AAKNWAH PP + +
Sbjct: 127 --YQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNK 182
BLAST of CmaCh05G000220 vs. ExPASy Swiss-Prot
Match:
O22152 (Axial regulator YABBY 1 OS=Arabidopsis thaliana OX=3702 GN=YAB1 PE=1 SV=1)
HSP 1 Score: 141.4 bits (355), Expect = 1.1e-32
Identity = 81/174 (46.55%), Postives = 109/174 (62.64%), Query Frame = 0
Query: 12 PSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAK---PSFIPFDL-L 71
PS+ + YVQC C TIL VNVPY++L V+VRCG CT LLSVNM P+ L L
Sbjct: 21 PSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQL 80
Query: 72 TSLSHNLPK---EPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIIIPPTP 131
S+ P+ E +D ++ + N + T + + S+ ++ Q HE IP P
Sbjct: 81 GPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHE--------IPKAP 140
Query: 132 VVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVN 179
VN+PPEK+QR PSAYN+FIKEEI+R+KA NP ++H+EAF AAKNWAH P ++
Sbjct: 141 PVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 186
BLAST of CmaCh05G000220 vs. ExPASy Swiss-Prot
Match:
Q9XFB0 (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana OX=3702 GN=YAB2 PE=1 SV=1)
HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27
Identity = 73/166 (43.98%), Postives = 101/166 (60.84%), Query Frame = 0
Query: 13 SEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSFIPFDLLTSLSH 72
SE++ YV C C+TIL V+VPY++L +V+VRCG+CT LLS+N+ SL
Sbjct: 7 SERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIG----------VSLHQ 66
Query: 73 NLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIIIPPTPVVNKPPEK 132
QDL + +L D +S + E+ D +A +PP +PPEK
Sbjct: 67 TSAPPIHQDLQPHRQ-HTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPI----RPPEK 126
Query: 133 KQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVN 179
+QR PSAYN+FIKEEI+R+KA NP ++H+EAF TAAKNWAH P ++
Sbjct: 127 RQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIH 157
BLAST of CmaCh05G000220 vs. ExPASy Swiss-Prot
Match:
Q10FZ7 (Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1)
HSP 1 Score: 123.6 bits (309), Expect = 2.4e-27
Identity = 77/185 (41.62%), Postives = 108/185 (58.38%), Query Frame = 0
Query: 7 QLLPDPSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSFIPFDL 66
Q++P P E + YV C C+TI V+VP +++ +V+VRCG+CT LLSVN
Sbjct: 4 QIVPAP-EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVN----------- 63
Query: 67 LTSLSHNLPKEPFQDLNVQKHLCLDNLNNTSDLLTS--YHNIIQNHEDDDDDAIIIPPTP 126
L L LP E N++ H + N S+ +S Y + +D + ++
Sbjct: 64 LRGLVQALPAEDHLQDNLKMH-NMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHV--- 123
Query: 127 VVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVN-GEGDH 186
+PPEK+QR PSAYN+FIKEEIRR+KA NP ++H+EAF TAAKNWAH P ++ G G H
Sbjct: 124 ---RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSH 169
Query: 187 VGRKR 189
K+
Sbjct: 184 ESSKK 169
BLAST of CmaCh05G000220 vs. ExPASy Swiss-Prot
Match:
Q9XFB1 (Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1)
HSP 1 Score: 123.2 bits (308), Expect = 3.1e-27
Identity = 72/192 (37.50%), Postives = 110/192 (57.29%), Query Frame = 0
Query: 2 SSTLEQLLPD---PSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAK 61
SS+ PD ++Q+ YV C C T+L V+VP S+L V+VRCG+C+ LLSV ++
Sbjct: 8 SSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSM 67
Query: 62 PSFIPFDLLTSLSHNL--PKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHED---- 121
+ + +++L H+ P P N+ + + N +++ S+H + +
Sbjct: 68 RALL-LPSVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVM 127
Query: 122 ------DDDDAIIIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKT 179
D +P P N+PPEK+QR PSAYN+FIKEEI+R+KA NP ++H+EAF
Sbjct: 128 ATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSA 187
BLAST of CmaCh05G000220 vs. TAIR 10
Match:
AT1G23420.1 (Plant-specific transcription factor YABBY family protein )
HSP 1 Score: 171.0 bits (432), Expect = 9.1e-43
Identity = 95/180 (52.78%), Postives = 125/180 (69.44%), Query Frame = 0
Query: 1 MSSTLEQLLPDPSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPS 60
M++TL L P QI +VQCG C+TILLV+VP+++LSMVV+VRCG+CT LLSVN+ K S
Sbjct: 7 MTTTLNHLFDLPG-QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKAS 66
Query: 61 FIPFDLLTSLSHNLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIII 120
FIP LL SLSH L + +++ + + + S ++ + +++D+D +
Sbjct: 67 FIPLHLLASLSH-LDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRV 126
Query: 121 PPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVNGE 180
VVNKPPEK+QRAPSAYN FIKEEIRRLKA+NP MAHKEAF AAKNWAH PP + +
Sbjct: 127 --YQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNK 182
BLAST of CmaCh05G000220 vs. TAIR 10
Match:
AT2G45190.1 (Plant-specific transcription factor YABBY family protein )
HSP 1 Score: 141.4 bits (355), Expect = 7.8e-34
Identity = 81/174 (46.55%), Postives = 109/174 (62.64%), Query Frame = 0
Query: 12 PSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAK---PSFIPFDL-L 71
PS+ + YVQC C TIL VNVPY++L V+VRCG CT LLSVNM P+ L L
Sbjct: 21 PSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQL 80
Query: 72 TSLSHNLPK---EPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIIIPPTP 131
S+ P+ E +D ++ + N + T + + S+ ++ Q HE IP P
Sbjct: 81 GPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHE--------IPKAP 140
Query: 132 VVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVN 179
VN+PPEK+QR PSAYN+FIKEEI+R+KA NP ++H+EAF AAKNWAH P ++
Sbjct: 141 PVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 186
BLAST of CmaCh05G000220 vs. TAIR 10
Match:
AT1G08465.1 (Plant-specific transcription factor YABBY family protein )
HSP 1 Score: 124.8 bits (312), Expect = 7.5e-29
Identity = 73/166 (43.98%), Postives = 101/166 (60.84%), Query Frame = 0
Query: 13 SEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSFIPFDLLTSLSH 72
SE++ YV C C+TIL V+VPY++L +V+VRCG+CT LLS+N+ SL
Sbjct: 7 SERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIG----------VSLHQ 66
Query: 73 NLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIIIPPTPVVNKPPEK 132
QDL + +L D +S + E+ D +A +PP +PPEK
Sbjct: 67 TSAPPIHQDLQPHRQ-HTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPI----RPPEK 126
Query: 133 KQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVN 179
+QR PSAYN+FIKEEI+R+KA NP ++H+EAF TAAKNWAH P ++
Sbjct: 127 RQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIH 157
BLAST of CmaCh05G000220 vs. TAIR 10
Match:
AT4G00180.1 (Plant-specific transcription factor YABBY family protein )
HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 72/192 (37.50%), Postives = 110/192 (57.29%), Query Frame = 0
Query: 2 SSTLEQLLPD---PSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAK 61
SS+ PD ++Q+ YV C C T+L V+VP S+L V+VRCG+C+ LLSV ++
Sbjct: 8 SSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSM 67
Query: 62 PSFIPFDLLTSLSHNL--PKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHED---- 121
+ + +++L H+ P P N+ + + N +++ S+H + +
Sbjct: 68 RALL-LPSVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVM 127
Query: 122 ------DDDDAIIIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKT 179
D +P P N+PPEK+QR PSAYN+FIKEEI+R+KA NP ++H+EAF
Sbjct: 128 ATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSA 187
BLAST of CmaCh05G000220 vs. TAIR 10
Match:
AT2G26580.1 (plant-specific transcription factor YABBY family protein )
HSP 1 Score: 122.9 bits (307), Expect = 2.9e-28
Identity = 73/168 (43.45%), Postives = 96/168 (57.14%), Query Frame = 0
Query: 13 SEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSFIPFDLLTSLSH 72
+EQ+ Y+ C C+ IL VNVP S+L +V+VRCG+CT L SVNMA L SLS
Sbjct: 8 TEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAA-------ALQSLSR 67
Query: 73 NLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDD--DAIIIPPTPVVNKPP 132
N T+ + Y + ++H I +VN+PP
Sbjct: 68 ------------------PNFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPP 127
Query: 133 EKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVN 179
EK+QR PSAYNQFIKEEI+R+KA NP ++H+EAF TAAKNWAH P ++
Sbjct: 128 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 150
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9LDT3 | 1.3e-41 | 52.78 | Axial regulator YABBY 4 OS=Arabidopsis thaliana OX=3702 GN=YAB4 PE=1 SV=2 | [more] |
O22152 | 1.1e-32 | 46.55 | Axial regulator YABBY 1 OS=Arabidopsis thaliana OX=3702 GN=YAB1 PE=1 SV=1 | [more] |
Q9XFB0 | 1.1e-27 | 43.98 | Putative axial regulator YABBY 2 OS=Arabidopsis thaliana OX=3702 GN=YAB2 PE=1 SV... | [more] |
Q10FZ7 | 2.4e-27 | 41.62 | Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1 | [more] |
Q9XFB1 | 3.1e-27 | 37.50 | Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT1G23420.1 | 9.1e-43 | 52.78 | Plant-specific transcription factor YABBY family protein | [more] |
AT2G45190.1 | 7.8e-34 | 46.55 | Plant-specific transcription factor YABBY family protein | [more] |
AT1G08465.1 | 7.5e-29 | 43.98 | Plant-specific transcription factor YABBY family protein | [more] |
AT4G00180.1 | 2.2e-28 | 37.50 | Plant-specific transcription factor YABBY family protein | [more] |
AT2G26580.1 | 2.9e-28 | 43.45 | plant-specific transcription factor YABBY family protein | [more] |