CmaCh05G000220 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G000220
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionaxial regulator YABBY 4-like
LocationCma_Chr05: 105423 .. 106388 (-)
RNA-Seq ExpressionCmaCh05G000220
SyntenyCmaCh05G000220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCACACTGGAACAGCTCCTGCCCGACCCCTCTGAACAGATTCGCTATGTGCAATGTGGTCTTTGTAGCACCATATTGTTGGTAGGATCATATTACAATAAAATTATATATTGTAGTTTTGTTTGGAAGTGTTGAATTAACAATAGTATTGTATTATACAAACAGGTAAATGTGCCATACAGCAACTTGTCGATGGTGGTGAGCGTAAGATGCGGCAACTGCACTGGCCTCCTCTCCGTCAACATGGCCAAGCCCTCTTTTATCCCTTTTGATCTTCTCACTTCCCTCTCTCACAACTTGGTTGGTACCCTCTTCATTTCATTTGGTTTCCCTCCAAAAACATGTTCTTAATCATTCAAAATTGACAGCCAAAGGAGCCTTTCCAAGACTTGAACGTCCAGAAACACTTGTGCTTGGACAACCTCAACAACACGTCCGACCTCCTAACCTCGTACCACAACATTATCCAAAATCACGAAGACGATGATGACGATGCCATCATCATTCCACCCACTCCAGTTGTTAACAAGCGTACGCCTCCATGGACAATATAGTATTATCATTATTATTTGAATTTTATCTGGCTTTTGATTGTGGCCTCTGATAATTATTAGCCCCGGAGAAGAAACAGCGAGCCCCGTCAGCTTATAACCAATTCATCAAGTAAGATAACAATAATAATAATAGTATTGATAAGGAAAAAAAGAATGGTATTTCATGCATATGGTGCGTGCAACCAACGCAGGGAGGAGATTCGGAGGCTGAAAGCGGAGAACCCGGGAATGGCGCATAAGGAGGCATTCAAGACAGCGGCAAAGAATGTAAGAAAGAAGCATTGTTTGTTTGTTGATTAATTAATTAATGTTTGAGAATTGGTTTGGTTGTTGCATGCAGTGGGCTCATCTCCCTCCAGTCAATGGCGAAGGAGATCACGTGGGGAGGAAGAGAAACGTAATGTGA

mRNA sequence

ATGTCGTCCACACTGGAACAGCTCCTGCCCGACCCCTCTGAACAGATTCGCTATGTGCAATGTGGTCTTTGTAGCACCATATTGTTGGTAAATGTGCCATACAGCAACTTGTCGATGGTGGTGAGCGTAAGATGCGGCAACTGCACTGGCCTCCTCTCCGTCAACATGGCCAAGCCCTCTTTTATCCCTTTTGATCTTCTCACTTCCCTCTCTCACAACTTGCCAAAGGAGCCTTTCCAAGACTTGAACGTCCAGAAACACTTGTGCTTGGACAACCTCAACAACACGTCCGACCTCCTAACCTCGTACCACAACATTATCCAAAATCACGAAGACGATGATGACGATGCCATCATCATTCCACCCACTCCAGTTGTTAACAAGCCCCCGGAGAAGAAACAGCGAGCCCCGTCAGCTTATAACCAATTCATCAAGGAGGAGATTCGGAGGCTGAAAGCGGAGAACCCGGGAATGGCGCATAAGGAGGCATTCAAGACAGCGGCAAAGAATTGGGCTCATCTCCCTCCAGTCAATGGCGAAGGAGATCACGTGGGGAGGAAGAGAAACGTAATGTGA

Coding sequence (CDS)

ATGTCGTCCACACTGGAACAGCTCCTGCCCGACCCCTCTGAACAGATTCGCTATGTGCAATGTGGTCTTTGTAGCACCATATTGTTGGTAAATGTGCCATACAGCAACTTGTCGATGGTGGTGAGCGTAAGATGCGGCAACTGCACTGGCCTCCTCTCCGTCAACATGGCCAAGCCCTCTTTTATCCCTTTTGATCTTCTCACTTCCCTCTCTCACAACTTGCCAAAGGAGCCTTTCCAAGACTTGAACGTCCAGAAACACTTGTGCTTGGACAACCTCAACAACACGTCCGACCTCCTAACCTCGTACCACAACATTATCCAAAATCACGAAGACGATGATGACGATGCCATCATCATTCCACCCACTCCAGTTGTTAACAAGCCCCCGGAGAAGAAACAGCGAGCCCCGTCAGCTTATAACCAATTCATCAAGGAGGAGATTCGGAGGCTGAAAGCGGAGAACCCGGGAATGGCGCATAAGGAGGCATTCAAGACAGCGGCAAAGAATTGGGCTCATCTCCCTCCAGTCAATGGCGAAGGAGATCACGTGGGGAGGAAGAGAAACGTAATGTGA

Protein sequence

MSSTLEQLLPDPSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSFIPFDLLTSLSHNLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIIIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVNGEGDHVGRKRNVM
Homology
BLAST of CmaCh05G000220 vs. ExPASy Swiss-Prot
Match: Q9LDT3 (Axial regulator YABBY 4 OS=Arabidopsis thaliana OX=3702 GN=YAB4 PE=1 SV=2)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-41
Identity = 95/180 (52.78%), Postives = 125/180 (69.44%), Query Frame = 0

Query: 1   MSSTLEQLLPDPSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPS 60
           M++TL  L   P  QI +VQCG C+TILLV+VP+++LSMVV+VRCG+CT LLSVN+ K S
Sbjct: 7   MTTTLNHLFDLPG-QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKAS 66

Query: 61  FIPFDLLTSLSHNLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIII 120
           FIP  LL SLSH L +   +++     +  +      +   S   ++ + +++D+D   +
Sbjct: 67  FIPLHLLASLSH-LDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRV 126

Query: 121 PPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVNGE 180
               VVNKPPEK+QRAPSAYN FIKEEIRRLKA+NP MAHKEAF  AAKNWAH PP + +
Sbjct: 127 --YQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNK 182

BLAST of CmaCh05G000220 vs. ExPASy Swiss-Prot
Match: O22152 (Axial regulator YABBY 1 OS=Arabidopsis thaliana OX=3702 GN=YAB1 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-32
Identity = 81/174 (46.55%), Postives = 109/174 (62.64%), Query Frame = 0

Query: 12  PSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAK---PSFIPFDL-L 71
           PS+ + YVQC  C TIL VNVPY++L   V+VRCG CT LLSVNM     P+     L L
Sbjct: 21  PSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQL 80

Query: 72  TSLSHNLPK---EPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIIIPPTP 131
              S+  P+   E  +D     ++ + N + T + + S+ ++ Q HE        IP  P
Sbjct: 81  GPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHE--------IPKAP 140

Query: 132 VVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVN 179
            VN+PPEK+QR PSAYN+FIKEEI+R+KA NP ++H+EAF  AAKNWAH P ++
Sbjct: 141 PVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 186

BLAST of CmaCh05G000220 vs. ExPASy Swiss-Prot
Match: Q9XFB0 (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana OX=3702 GN=YAB2 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-27
Identity = 73/166 (43.98%), Postives = 101/166 (60.84%), Query Frame = 0

Query: 13  SEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSFIPFDLLTSLSH 72
           SE++ YV C  C+TIL V+VPY++L  +V+VRCG+CT LLS+N+            SL  
Sbjct: 7   SERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIG----------VSLHQ 66

Query: 73  NLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIIIPPTPVVNKPPEK 132
                  QDL   +     +L    D  +S  +     E+ D +A  +PP     +PPEK
Sbjct: 67  TSAPPIHQDLQPHRQ-HTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPI----RPPEK 126

Query: 133 KQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVN 179
           +QR PSAYN+FIKEEI+R+KA NP ++H+EAF TAAKNWAH P ++
Sbjct: 127 RQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIH 157

BLAST of CmaCh05G000220 vs. ExPASy Swiss-Prot
Match: Q10FZ7 (Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.4e-27
Identity = 77/185 (41.62%), Postives = 108/185 (58.38%), Query Frame = 0

Query: 7   QLLPDPSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSFIPFDL 66
           Q++P P E + YV C  C+TI  V+VP +++  +V+VRCG+CT LLSVN           
Sbjct: 4   QIVPAP-EHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVN----------- 63

Query: 67  LTSLSHNLPKEPFQDLNVQKHLCLDNLNNTSDLLTS--YHNIIQNHEDDDDDAIIIPPTP 126
           L  L   LP E     N++ H  +    N S+  +S  Y  +      +D + ++     
Sbjct: 64  LRGLVQALPAEDHLQDNLKMH-NMSFRENYSEYGSSSRYGRVPMMFSKNDTEHMLHV--- 123

Query: 127 VVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVN-GEGDH 186
              +PPEK+QR PSAYN+FIKEEIRR+KA NP ++H+EAF TAAKNWAH P ++ G G H
Sbjct: 124 ---RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGLGSH 169

Query: 187 VGRKR 189
              K+
Sbjct: 184 ESSKK 169

BLAST of CmaCh05G000220 vs. ExPASy Swiss-Prot
Match: Q9XFB1 (Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.1e-27
Identity = 72/192 (37.50%), Postives = 110/192 (57.29%), Query Frame = 0

Query: 2   SSTLEQLLPD---PSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAK 61
           SS+     PD    ++Q+ YV C  C T+L V+VP S+L   V+VRCG+C+ LLSV ++ 
Sbjct: 8   SSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSM 67

Query: 62  PSFIPFDLLTSLSHNL--PKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHED---- 121
            + +    +++L H+   P  P    N+ + +     N   +++ S+H    +  +    
Sbjct: 68  RALL-LPSVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVM 127

Query: 122 ------DDDDAIIIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKT 179
                   D    +P  P  N+PPEK+QR PSAYN+FIKEEI+R+KA NP ++H+EAF  
Sbjct: 128 ATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSA 187

BLAST of CmaCh05G000220 vs. TAIR 10
Match: AT1G23420.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 171.0 bits (432), Expect = 9.1e-43
Identity = 95/180 (52.78%), Postives = 125/180 (69.44%), Query Frame = 0

Query: 1   MSSTLEQLLPDPSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPS 60
           M++TL  L   P  QI +VQCG C+TILLV+VP+++LSMVV+VRCG+CT LLSVN+ K S
Sbjct: 7   MTTTLNHLFDLPG-QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKAS 66

Query: 61  FIPFDLLTSLSHNLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIII 120
           FIP  LL SLSH L +   +++     +  +      +   S   ++ + +++D+D   +
Sbjct: 67  FIPLHLLASLSH-LDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRV 126

Query: 121 PPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVNGE 180
               VVNKPPEK+QRAPSAYN FIKEEIRRLKA+NP MAHKEAF  AAKNWAH PP + +
Sbjct: 127 --YQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNK 182

BLAST of CmaCh05G000220 vs. TAIR 10
Match: AT2G45190.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 141.4 bits (355), Expect = 7.8e-34
Identity = 81/174 (46.55%), Postives = 109/174 (62.64%), Query Frame = 0

Query: 12  PSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAK---PSFIPFDL-L 71
           PS+ + YVQC  C TIL VNVPY++L   V+VRCG CT LLSVNM     P+     L L
Sbjct: 21  PSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQL 80

Query: 72  TSLSHNLPK---EPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIIIPPTP 131
              S+  P+   E  +D     ++ + N + T + + S+ ++ Q HE        IP  P
Sbjct: 81  GPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHE--------IPKAP 140

Query: 132 VVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVN 179
            VN+PPEK+QR PSAYN+FIKEEI+R+KA NP ++H+EAF  AAKNWAH P ++
Sbjct: 141 PVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 186

BLAST of CmaCh05G000220 vs. TAIR 10
Match: AT1G08465.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 124.8 bits (312), Expect = 7.5e-29
Identity = 73/166 (43.98%), Postives = 101/166 (60.84%), Query Frame = 0

Query: 13  SEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSFIPFDLLTSLSH 72
           SE++ YV C  C+TIL V+VPY++L  +V+VRCG+CT LLS+N+            SL  
Sbjct: 7   SERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIG----------VSLHQ 66

Query: 73  NLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDDDAIIIPPTPVVNKPPEK 132
                  QDL   +     +L    D  +S  +     E+ D +A  +PP     +PPEK
Sbjct: 67  TSAPPIHQDLQPHRQ-HTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPI----RPPEK 126

Query: 133 KQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVN 179
           +QR PSAYN+FIKEEI+R+KA NP ++H+EAF TAAKNWAH P ++
Sbjct: 127 RQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIH 157

BLAST of CmaCh05G000220 vs. TAIR 10
Match: AT4G00180.1 (Plant-specific transcription factor YABBY family protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 72/192 (37.50%), Postives = 110/192 (57.29%), Query Frame = 0

Query: 2   SSTLEQLLPD---PSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAK 61
           SS+     PD    ++Q+ YV C  C T+L V+VP S+L   V+VRCG+C+ LLSV ++ 
Sbjct: 8   SSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSM 67

Query: 62  PSFIPFDLLTSLSHNL--PKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHED---- 121
            + +    +++L H+   P  P    N+ + +     N   +++ S+H    +  +    
Sbjct: 68  RALL-LPSVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVM 127

Query: 122 ------DDDDAIIIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKT 179
                   D    +P  P  N+PPEK+QR PSAYN+FIKEEI+R+KA NP ++H+EAF  
Sbjct: 128 ATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSA 187

BLAST of CmaCh05G000220 vs. TAIR 10
Match: AT2G26580.1 (plant-specific transcription factor YABBY family protein )

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-28
Identity = 73/168 (43.45%), Postives = 96/168 (57.14%), Query Frame = 0

Query: 13  SEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCTGLLSVNMAKPSFIPFDLLTSLSH 72
           +EQ+ Y+ C  C+ IL VNVP S+L  +V+VRCG+CT L SVNMA         L SLS 
Sbjct: 8   TEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAA-------ALQSLSR 67

Query: 73  NLPKEPFQDLNVQKHLCLDNLNNTSDLLTSYHNIIQNHEDDDD--DAIIIPPTPVVNKPP 132
                              N   T+  +  Y +  ++H           I    +VN+PP
Sbjct: 68  ------------------PNFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPP 127

Query: 133 EKKQRAPSAYNQFIKEEIRRLKAENPGMAHKEAFKTAAKNWAHLPPVN 179
           EK+QR PSAYNQFIKEEI+R+KA NP ++H+EAF TAAKNWAH P ++
Sbjct: 128 EKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LDT31.3e-4152.78Axial regulator YABBY 4 OS=Arabidopsis thaliana OX=3702 GN=YAB4 PE=1 SV=2[more]
O221521.1e-3246.55Axial regulator YABBY 1 OS=Arabidopsis thaliana OX=3702 GN=YAB1 PE=1 SV=1[more]
Q9XFB01.1e-2743.98Putative axial regulator YABBY 2 OS=Arabidopsis thaliana OX=3702 GN=YAB2 PE=1 SV... [more]
Q10FZ72.4e-2741.62Protein YABBY 2 OS=Oryza sativa subsp. japonica OX=39947 GN=YAB2 PE=2 SV=1[more]
Q9XFB13.1e-2737.50Axial regulator YABBY 3 OS=Arabidopsis thaliana OX=3702 GN=YAB3 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
AT1G23420.19.1e-4352.78Plant-specific transcription factor YABBY family protein [more]
AT2G45190.17.8e-3446.55Plant-specific transcription factor YABBY family protein [more]
AT1G08465.17.5e-2943.98Plant-specific transcription factor YABBY family protein [more]
AT4G00180.12.2e-2837.50Plant-specific transcription factor YABBY family protein [more]
AT2G26580.12.9e-2843.45plant-specific transcription factor YABBY family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006780YABBY proteinPFAMPF04690YABBYcoord: 12..177
e-value: 9.9E-55
score: 185.6
IPR006780YABBY proteinPANTHERPTHR31675PROTEIN YABBY 6-RELATEDcoord: 1..181
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10High mobility group box domaincoord: 125..179
e-value: 5.4E-9
score: 38.3
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 124..176
NoneNo IPR availablePANTHERPTHR31675:SF8AXIAL REGULATOR YABBY 4coord: 1..181
NoneNo IPR availableCDDcd00084HMG-boxcoord: 135..176
e-value: 1.24548E-6
score: 42.2208

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G000220.1CmaCh05G000220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045165 cell fate commitment
biological_process GO:0048481 plant ovule development
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0007275 multicellular organism development
cellular_component GO:0005634 nucleus