Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTTGAAGAGTCGAAGACCAACAACACTCGTTTATCCAGAGACTCGATCTAGTTAATTTAGCTGTTTCCGTACCTAAAAAAGGGGGAAAACCCCCCAAGGGCGCTGAAATACGGTGGAAACTGAAACTAGAGCGCGAAGAAGAAGATAGGTTGCGTTTGGATGAGACGCCTGTTCTTCCCCAAGCCTTCCATGGCCTCCTCCATCCTTGCCCCATCCCACTTTTATTCCCTTTCTATCCCTTCCGCACGTCTATGTCCTCCATTGCACCTAATTTCTTTCCTTTCTTCTGCTGGTCGCCGCTTTACGACTGCCTCTTCCGCATCACCTAAGCCGTTATTTGCTCTTGACGATTCTTCACCTGATTTCTGTCAGTTCTTGAGTATCTATGCCTGTTTTCTTACATTCTTTTATTTGTTTATTCGACTACTTATCCTTCGATTCTGTACATTTTGTTGCCATTTACATTCGGATGATACTTTTGCGGTCTCTTTTCTTATAGCTATGCCTGAAAAAAAGGAAATCCTGCACACTGATTCCAAGATGCTTCTAAAGGGTCTGTCTTACACTGAACTTGAGGCAAGTCCCTGCTAAACTCTCTCTCTTTCTCGTTTGCGCTTATCCGTCTCTCCTTCTTGCGCGCTTATTGAAGAAGACCCTTTTGCTCGGGTACGCGCATCCTAATTTTTGTTTTTACCCTAACATATACGCTGATAGAAATGGGTTAAAGCTCGAGGATACAGACCTGGTCAAGCTTTAATGCTGTGGAAACGTCTTTATGGGGATAACGTTTGGGCTCATTCCGGCGATGAATTAGAAGGTCTTCTTGCTTTCTCAATTTATTTCGAATACCAGCCTTTCTTTACATTTTAACGCTTTCATTGATAGCAGAATTTTTCCATCATCTGCTTTTCTCTTGTTGTAACTTGGAACTTATCTACTCAATCCAATTAATTTCTCCGTGCTGTCAAATCTTAGGTTTGAACAAAGATTTTAAGAAAATGTTGATTGAAAAAGCTGAATTCAGGGCGCTATCTTTGAGGGAAATTCTCCCTTCATCTGATGGAACGAGGAAGGTGTGTATAGTTACATTCTAGCAAGTGCTATATTATAATTATTCAATTTTCTTCTGGTTTCTTTGTGGGTTCTGGCTCCAGTGTACAAAATATCATTATACTTGGCTTTAGTTCTCTGCATTTGTGCTCCCAAGATTCGTCTGATTAATTTCAAAGCTCACAGGATATTACAGATTTTGTTCAATCTGGAAGATGGATTGATAATAGAAACTGTTGTTATACCTTGCGATAGAGGCAGGACTACTGTTTGCGTTTCAAGTCAAGTGGGCTGTGCTATGAACTGTCAATTCTGCTACACTGGCAGGCAAGCTTCAATTCTTCAATTTGATTAGATGCTATGCTTTCCGCATGATCTTAGTTGTAGTAAACATGAATTTTCGGATTGTTAGTTTTCAATTCATTTTTCAGGATGGGCCTGAAGAGACATCTGACTGCTGCTGAGATAGTAGAACAGGCAGTTTTTGCGAGGCGTTTGCTTACTTGTGAAGTTGGGTTAATTACTAATGTTGTGTTTATGGTATGTTTAAGATCTGAAACTATCTAACATACAAGATGGAAAACGAAATATATGGAAAAATTATCTTTTTTTGGAATTTTTCTAATTCTTTCAACGGGGCTGATCTACCCTATGTCCAGTTTGTGGTTTATTTACCAACCAAGATTTCGCTATGGGAGAAAATTAGTAGATTTTTAAATCCGAAAGGAGAGAATATGGTTGGTAGTAACACCTTATCAGAGGGGTGGTCCTAGTTGGTTTGGCACTCTTACAGGAATAATTCTACCTTATTTCAATCTGTGCCTGCAACGTTTTTTCATTTAATCATTGTAGACTATTCCAAGCCACACGTCCTTTATGCATTTAGCTGGAACAAAATTTGCAGGCATTTCTAGCATTCTTAGTTTTCTTTCCTGATAAGATTTTTATTGTTTCTTTGTTTTATGTCATATTGAAGATTTATGCTTGGTTTTTTGGGTCTTACTGAATACCTCTTCTTTTTCATTATTTTCATTATTAAAACCTGACATTTATAATGGTTGTCTCAGTGAGAACCATCATCTTTTTCCATGTTTTGATCAGAAAAACTGAAATTGAATGTTATTAGGGAATGGGAGAGCCACTTCACAACATTGACAATGTCATTAAAGCAGCAAATATAATGGTTGATGAACAAGGCCTTCATTTCAGTCCTCGCAAGGTCACTGTTTCAACCAGTGGACTTGTTCCCCAGCTCAAACGTTTCCTTCATGATTGTAACTGCGCTTTAGCCGTTAGTTTGAATGCAACTACTGATGAGGTACATGCTTAACGGTTGACATTACTCTAATGTGCGAAATAAAAAAAATATGAAGAATTCCCTTCTCTCTCACATGGCAAAATAAACGTTGCAGGTTAGAAATTGGATCATGCCAATTAACCGGAAGTATAAGTTAGGCTTGCTTCTTCAGACTTTACGTGAGGAACTTCGCTGCAAACACAATTACAAGGTTCTTTTTGAATATGTGATGCTTGCTGGGGTTAATGACAGGTTATTACAGCTTCTATGTTTTGGACTTATTCATTGTTTAAACCGGAGCTGTAGATGATGAGTTCATTTTATCAAGTTTATCTTTACAATCATTCTAATCTTTTGTTTTTTGTATCAATCGGTTGTATTGTAACATGCAGCATTGAAGATGCGAAGAGGATTGTTGATCTTGTCCAGGGTATTCCATGCAAGATTAACCTTATTTCATTTAATCCACATTGTGGATCTCAATTTAGACCTACCTGCAAGGAGAAGATGATCGAGTTTCGGAATGTTTTGGCTGCAGCCGGGTTGACTGTTCTCTTGCGACTAAGCAGAGGTGATGACCAGATGGCTGCCTGTGGTCAGTTAGGCAAACCTGGTACAATTCAAGCTCCTTTACTCCGTGTACCGGATCAATTCCAAATGGCAATGAAATTGGCTCCCTAGACCCTACTTTGTTCATTCGACAAGGTGTAGAAACATTCACCCCCAGATTGAGAACGTCATCCCTCATCTTATCCCAAATTTTGGCTCTCTTCAGTTTCGCTTTTCAACTTGTACCTTATTCTTGGGACAAATTTTGAATTTGGTATTTATAACCAGTGATATGGGCGTGGTAAGTTTGACACTAATTTGCAATGTAGTTGAACTTAACGACGATGTAGAAGTTGAAAACGTAGGTGC
mRNA sequence
TTCTTGAAGAGTCGAAGACCAACAACACTCGTTTATCCAGAGACTCGATCTAGTTAATTTAGCTGTTTCCGTACCTAAAAAAGGGGGAAAACCCCCCAAGGGCGCTGAAATACGGTGGAAACTGAAACTAGAGCGCGAAGAAGAAGATAGGTTGCGTTTGGATGAGACGCCTGTTCTTCCCCAAGCCTTCCATGGCCTCCTCCATCCTTGCCCCATCCCACTTTTATTCCCTTTCTATCCCTTCCGCACGTCTATGTCCTCCATTGCACCTAATTTCTTTCCTTTCTTCTGCTGGTCGCCGCTTTACGACTGCCTCTTCCGCATCACCTAAGCCGTTATTTGCTCTTGACGATTCTTCACCTGATTTCTCTATGCCTGAAAAAAAGGAAATCCTGCACACTGATTCCAAGATGCTTCTAAAGGGTCTGTCTTACACTGAACTTGAGAAATGGGTTAAAGCTCGAGGATACAGACCTGGTCAAGCTTTAATGCTGTGGAAACGTCTTTATGGGGATAACGTTTGGGCTCATTCCGGCGATGAATTAGAAGGTTTGAACAAAGATTTTAAGAAAATGTTGATTGAAAAAGCTGAATTCAGGGCGCTATCTTTGAGGGAAATTCTCCCTTCATCTGATGGAACGAGGAAGATTTTGTTCAATCTGGAAGATGGATTGATAATAGAAACTGTTGTTATACCTTGCGATAGAGGCAGGACTACTGTTTGCGTTTCAAGTCAAGTGGGCTGTGCTATGAACTGTCAATTCTGCTACACTGGCAGGATGGGCCTGAAGAGACATCTGACTGCTGCTGAGATAGTAGAACAGGCAGTTTTTGCGAGGCGTTTGCTTACTTGTGAAGTTGGGTTAATTACTAATGTTGTGTTTATGGGAATGGGAGAGCCACTTCACAACATTGACAATGTCATTAAAGCAGCAAATATAATGGTTGATGAACAAGGCCTTCATTTCAGTCCTCGCAAGGTCACTGTTTCAACCAGTGGACTTGTTCCCCAGCTCAAACGTTTCCTTCATGATTGTAACTGCGCTTTAGCCGTTAGTTTGAATGCAACTACTGATGAGGTTAGAAATTGGATCATGCCAATTAACCGGAAGTATAAGTTAGGCTTGCTTCTTCAGACTTTACGTGAGGAACTTCGCTGCAAACACAATTACAAGGTTCTTTTTGAATATGTGATGCTTGCTGGGGTTAATGACAGCATTGAAGATGCGAAGAGGATTGTTGATCTTGTCCAGGGTATTCCATGCAAGATTAACCTTATTTCATTTAATCCACATTGTGGATCTCAATTTAGACCTACCTGCAAGGAGAAGATGATCGAGTTTCGGAATGTTTTGGCTGCAGCCGGGTTGACTGTTCTCTTGCGACTAAGCAGAGGTGATGACCAGATGGCTGCCTGTGGTCAGTTAGGCAAACCTGGTACAATTCAAGCTCCTTTACTCCGTGTACCGGATCAATTCCAAATGGCAATGAAATTGGCTCCCTAGACCCTACTTTGTTCATTCGACAAGGTGTAGAAACATTCACCCCCAGATTGAGAACGTCATCCCTCATCTTATCCCAAATTTTGGCTCTCTTCAGTTTCGCTTTTCAACTTGTACCTTATTCTTGGGACAAATTTTGAATTTGGTATTTATAACCAGTGATATGGGCGTGGTAAGTTTGACACTAATTTGCAATGTAGTTGAACTTAACGACGATGTAGAAGTTGAAAACGTAGGTGC
Coding sequence (CDS)
ATGAGACGCCTGTTCTTCCCCAAGCCTTCCATGGCCTCCTCCATCCTTGCCCCATCCCACTTTTATTCCCTTTCTATCCCTTCCGCACGTCTATGTCCTCCATTGCACCTAATTTCTTTCCTTTCTTCTGCTGGTCGCCGCTTTACGACTGCCTCTTCCGCATCACCTAAGCCGTTATTTGCTCTTGACGATTCTTCACCTGATTTCTCTATGCCTGAAAAAAAGGAAATCCTGCACACTGATTCCAAGATGCTTCTAAAGGGTCTGTCTTACACTGAACTTGAGAAATGGGTTAAAGCTCGAGGATACAGACCTGGTCAAGCTTTAATGCTGTGGAAACGTCTTTATGGGGATAACGTTTGGGCTCATTCCGGCGATGAATTAGAAGGTTTGAACAAAGATTTTAAGAAAATGTTGATTGAAAAAGCTGAATTCAGGGCGCTATCTTTGAGGGAAATTCTCCCTTCATCTGATGGAACGAGGAAGATTTTGTTCAATCTGGAAGATGGATTGATAATAGAAACTGTTGTTATACCTTGCGATAGAGGCAGGACTACTGTTTGCGTTTCAAGTCAAGTGGGCTGTGCTATGAACTGTCAATTCTGCTACACTGGCAGGATGGGCCTGAAGAGACATCTGACTGCTGCTGAGATAGTAGAACAGGCAGTTTTTGCGAGGCGTTTGCTTACTTGTGAAGTTGGGTTAATTACTAATGTTGTGTTTATGGGAATGGGAGAGCCACTTCACAACATTGACAATGTCATTAAAGCAGCAAATATAATGGTTGATGAACAAGGCCTTCATTTCAGTCCTCGCAAGGTCACTGTTTCAACCAGTGGACTTGTTCCCCAGCTCAAACGTTTCCTTCATGATTGTAACTGCGCTTTAGCCGTTAGTTTGAATGCAACTACTGATGAGGTTAGAAATTGGATCATGCCAATTAACCGGAAGTATAAGTTAGGCTTGCTTCTTCAGACTTTACGTGAGGAACTTCGCTGCAAACACAATTACAAGGTTCTTTTTGAATATGTGATGCTTGCTGGGGTTAATGACAGCATTGAAGATGCGAAGAGGATTGTTGATCTTGTCCAGGGTATTCCATGCAAGATTAACCTTATTTCATTTAATCCACATTGTGGATCTCAATTTAGACCTACCTGCAAGGAGAAGATGATCGAGTTTCGGAATGTTTTGGCTGCAGCCGGGTTGACTGTTCTCTTGCGACTAAGCAGAGGTGATGACCAGATGGCTGCCTGTGGTCAGTTAGGCAAACCTGGTACAATTCAAGCTCCTTTACTCCGTGTACCGGATCAATTCCAAATGGCAATGAAATTGGCTCCCTAG
Protein sequence
MRRLFFPKPSMASSILAPSHFYSLSIPSARLCPPLHLISFLSSAGRRFTTASSASPKPLFALDDSSPDFSMPEKKEILHTDSKMLLKGLSYTELEKWVKARGYRPGQALMLWKRLYGDNVWAHSGDELEGLNKDFKKMLIEKAEFRALSLREILPSSDGTRKILFNLEDGLIIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLTCEVGLITNVVFMGMGEPLHNIDNVIKAANIMVDEQGLHFSPRKVTVSTSGLVPQLKRFLHDCNCALAVSLNATTDEVRNWIMPINRKYKLGLLLQTLREELRCKHNYKVLFEYVMLAGVNDSIEDAKRIVDLVQGIPCKINLISFNPHCGSQFRPTCKEKMIEFRNVLAAAGLTVLLRLSRGDDQMAACGQLGKPGTIQAPLLRVPDQFQMAMKLAP
Homology
BLAST of CmaCh05G000050 vs. ExPASy Swiss-Prot
Match:
Q74E53 (Dual-specificity RNA methyltransferase RlmN OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=rlmN PE=3 SV=1)
HSP 1 Score: 289.3 bits (739), Expect = 7.6e-77
Identity = 163/342 (47.66%), Postives = 215/342 (62.87%), Query Frame = 0
Query: 81 DSKMLLKGLSYTELEKWVKARGYRPGQALMLWKRLYGDNVWAHSGDELEGLNKDFKKMLI 140
D+ + +KGLS ELE+++ +G +A ++K LY A S E+ L K+ ++ L
Sbjct: 2 DTMIDIKGLSIDELERFLLGKGKERYRARQIFKWLYQRG--ATSFAEMTDLAKELRRDLE 61
Query: 141 EKAEFRALSLREILPSSDGTRKILFNLEDGLIIETVVIPCDRGRTTVCVSSQVGCAMNCQ 200
E A LS + S DGTRK LF L+DG +E+V+IP + R T+C+SSQVGCAM C+
Sbjct: 62 ETARISTLSPEALEISRDGTRKYLFRLDDGCSVESVLIP-EEDRNTLCISSQVGCAMACE 121
Query: 201 FCYTGRMGLKRHLTAAEIVEQAVFARRLLTCEVGLITNVVFMGMGEPLHNIDNVIKAANI 260
FC TG L R+LT AEIV Q +R + + N+VFMGMGEPL N+DNVI+A I
Sbjct: 122 FCLTGTFRLTRNLTTAEIVNQVCAVQRDVP-----VRNIVFMGMGEPLANLDNVIRALQI 181
Query: 261 MVDEQGLHFSPRKVTVSTSGLVPQLKRFLHDCNCALAVSLNATTDEVRNWIMPINRKYKL 320
M+ + GL FS R++TVST+GLVP+++R LAVSLNATTDE+R+ IMPINRKY L
Sbjct: 182 MLHDDGLQFSTRRITVSTAGLVPEMERLGRSVTVNLAVSLNATTDELRDRIMPINRKYPL 241
Query: 321 GLLLQTLREELRCKHNYKVLFEYVMLAGVNDSIEDAKRIVDLVQGIPCKINLISFNPHCG 380
+LL R K+ EYV+L GVND+++DAKR+V L+ IP KINLI FN H G
Sbjct: 242 AVLLDACR-RFPLPGRRKITIEYVLLGGVNDTLDDAKRLVRLLSDIPSKINLIPFNEHEG 301
Query: 381 SQFRPTCKEKMIEFRNVLAAAGLTVLLRLSRGDDQMAACGQL 423
FR ++ + F L TV+ R SRG D AACGQL
Sbjct: 302 CSFRSPSQDAIDRFHRYLLDKHFTVITRSSRGADISAACGQL 334
BLAST of CmaCh05G000050 vs. ExPASy Swiss-Prot
Match:
A1AL40 (Dual-specificity RNA methyltransferase RlmN OS=Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) OX=338966 GN=rlmN PE=3 SV=1)
HSP 1 Score: 283.9 bits (725), Expect = 3.2e-75
Identity = 166/348 (47.70%), Postives = 214/348 (61.49%), Query Frame = 0
Query: 86 LKGLSYTELEKWVKARGYRPGQALMLWKRLYGDNVWAHSGDELEGLNKDFKKMLIEKAEF 145
LK L+ LE++++ +G +A ++K +Y + A S E+ ++KD + L KA
Sbjct: 7 LKNLTLPALEQFLRGQGKERFRATQVFKWIYQHD--ARSFQEMTNISKDLRAELEAKAYI 66
Query: 146 RALSLREILPSSDGTRKILFNLEDGLIIETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTG 205
L + DGTRK LF LEDG +E+V+IP D GR T+C+SSQVGCAM C FC TG
Sbjct: 67 SNLEPEAVEVGGDGTRKYLFGLEDGNSVESVLIP-DEGRNTLCISSQVGCAMGCAFCLTG 126
Query: 206 RMGLKRHLTAAEIVEQAVFARRLLTCEVGLITNVVFMGMGEPLHNIDNVIKAANIMVDEQ 265
L R+LT AEIV Q + RR + I N+V MGMGEPLHN+DNVI A +IM+D
Sbjct: 127 TFRLTRNLTTAEIVNQIMAVRRDVE-----IRNIVMMGMGEPLHNLDNVIPAIHIMIDGN 186
Query: 266 GLHFSPRKVTVSTSGLVPQLKRFLHDC-NCALAVSLNATTDEVRNWIMPINRKYKLGLLL 325
GL S R+VTVST GL P+++R + N LAVSLNATTDE+R+ IMPINR+Y L LL
Sbjct: 187 GLQLSNRRVTVSTCGLAPEMERLGRELPNVNLAVSLNATTDELRDRIMPINRRYPLKELL 246
Query: 326 QTLREELRCKHNYKVLFEYVMLAGVNDSIEDAKRIVDLVQGIPCKINLISFNPHCGSQFR 385
R E KV FEYVML G+ND++EDAKR++ L IP K+NLI FN G +FR
Sbjct: 247 SACR-EFPLPGRRKVTFEYVMLGGLNDTLEDAKRLLRLTSDIPNKVNLIPFNEFQGCEFR 306
Query: 386 PTCKEKMIEFRNVLAAAGLTVLLRLSRGDDQMAACGQL-GKPGTIQAP 432
+ + F L +TV+ R SRG D AACGQL GK + P
Sbjct: 307 SPTRAAIDAFHKYLIDRHVTVITRDSRGSDISAACGQLKGKLDAARQP 345
BLAST of CmaCh05G000050 vs. ExPASy Swiss-Prot
Match:
Q39S71 (Dual-specificity RNA methyltransferase RlmN OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=rlmN PE=3 SV=1)
HSP 1 Score: 282.7 bits (722), Expect = 7.1e-75
Identity = 162/342 (47.37%), Postives = 214/342 (62.57%), Query Frame = 0
Query: 81 DSKMLLKGLSYTELEKWVKARGYRPGQALMLWKRLYGDNVWAHSGDELEGLNKDFKKMLI 140
+ K+ +K L+ +L ++ +G +A ++K LY + A S E+ L KD ++ L
Sbjct: 3 NGKIDIKNLTLDDLIAFLAGKGKERYRARQIFKWLYQKD--ARSFAEMTDLAKDLRRDLE 62
Query: 141 EKAEFRALSLREILPSSDGTRKILFNLEDGLIIETVVIPCDRGRTTVCVSSQVGCAMNCQ 200
E A L + S DGTRK LF LEDG +E+V+IP + RTT+C+SSQVGCAM C+
Sbjct: 63 ETAVISDLEPEAMEVSRDGTRKYLFRLEDGNTVESVLIP-EEDRTTLCISSQVGCAMACE 122
Query: 201 FCYTGRMGLKRHLTAAEIVEQAVFARRLLTCEVGLITNVVFMGMGEPLHNIDNVIKAANI 260
FC TG L R+LTA EIV Q RR + + N+VFMGMGEPL N+DNV+KA I
Sbjct: 123 FCLTGTFRLTRNLTAGEIVNQICAVRRDVP-----VRNIVFMGMGEPLANLDNVVKALKI 182
Query: 261 MVDEQGLHFSPRKVTVSTSGLVPQLKRFLHDCNCALAVSLNATTDEVRNWIMPINRKYKL 320
++ + GL FS R+VTVSTSGLVP+++R + LAVSLNATTDEVR+ IMP+NR+Y L
Sbjct: 183 ILHDDGLQFSTRRVTVSTSGLVPEMERLGREVTVNLAVSLNATTDEVRDRIMPVNRRYPL 242
Query: 321 GLLLQTLREELRCKHNYKVLFEYVMLAGVNDSIEDAKRIVDLVQGIPCKINLISFNPHCG 380
LLL R K+ EYVM+ G+NDS+EDAKR+V L+ I KINLI FN H G
Sbjct: 243 RLLLDACR-SYPLPGRRKITIEYVMIKGLNDSLEDAKRLVKLLSDISSKINLIPFNEHDG 302
Query: 381 SQFRPTCKEKMIEFRNVLAAAGLTVLLRLSRGDDQMAACGQL 423
F+ + + F + L + TV+ R SRG D AACGQL
Sbjct: 303 CSFKSPDQGAIDVFHSYLLSKHFTVITRSSRGSDISAACGQL 335
BLAST of CmaCh05G000050 vs. ExPASy Swiss-Prot
Match:
Q3A2Z4 (Dual-specificity RNA methyltransferase RlmN OS=Pelobacter carbinolicus (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=rlmN PE=3 SV=1)
HSP 1 Score: 280.8 bits (717), Expect = 2.7e-74
Identity = 157/356 (44.10%), Postives = 216/356 (60.67%), Query Frame = 0
Query: 81 DSKMLLKGLSYTELEKWVKARG---YRPGQAL-MLWKRLYGDNVWAHSGDELEGLNKDFK 140
D+++ LK + EL +++ G +R GQ + ++ RL D D + L+K +
Sbjct: 8 DTRIDLKNFTLEELTEFLAGMGKERFRAGQVMRWMYHRLVDD------FDAMSDLSKVLR 67
Query: 141 KMLIEKAEFRALSLREILPSSDGTRKILFNLEDGLIIETVVIPCDRGRTTVCVSSQVGCA 200
L ++A L+ S DGTRK LF LEDG IE+V IP D R T+C+S+QVGCA
Sbjct: 68 AELHQRARISRLTPEATEDSRDGTRKYLFRLEDGETIESVRIPMDDNRATLCISTQVGCA 127
Query: 201 MNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLTCEVGLITNVVFMGMGEPLHNIDNVIK 260
M C FC+TG GL R+LT EIV Q A G + N+V MGMGEPLHN+DNV+K
Sbjct: 128 MGCVFCHTGSFGLVRNLTPGEIVNQVCAA-----LADGPVNNIVLMGMGEPLHNLDNVVK 187
Query: 261 AANIMVDEQGLHFSPRKVTVSTSGLVPQLKRFLHDCNCALAVSLNATTDEVRNWIMPINR 320
A I+ QGL +SPRKVT+ST+GLVPQ++ LAVSLNATTDEVRN +MP+N+
Sbjct: 188 ALQILYMPQGLDYSPRKVTLSTAGLVPQMQELGKRVRVNLAVSLNATTDEVRNRLMPVNQ 247
Query: 321 KYKLGLLLQTLRE-ELRCKHNYKVLFEYVMLAGVNDSIEDAKRIVDLVQGIPCKINLISF 380
+Y L L+ R+ L K ++ FEY+++ VNDS +DA+R+V L+ GI K+N+I F
Sbjct: 248 RYPLQQLMAACRQYPLHAKK--RITFEYILIRDVNDSDQDARRLVKLLHGIKAKVNIIPF 307
Query: 381 NPHCGSQFRPTCKEKMIEFRNVLAAAGLTVLLRLSRGDDQMAACGQLGKPGTIQAP 432
N H S+FR +E++ F+ L G+ + R S+G D AACGQL T+ P
Sbjct: 308 NEHSASEFRAPTEERISRFQGYLLDHGMVAIRRASKGQDISAACGQLKGKLTVSPP 350
BLAST of CmaCh05G000050 vs. ExPASy Swiss-Prot
Match:
A5GEC2 (Dual-specificity RNA methyltransferase RlmN OS=Geobacter uraniireducens (strain Rf4) OX=351605 GN=rlmN PE=3 SV=1)
HSP 1 Score: 276.6 bits (706), Expect = 5.1e-73
Identity = 155/340 (45.59%), Postives = 207/340 (60.88%), Query Frame = 0
Query: 83 KMLLKGLSYTELEKWVKARGYRPGQALMLWKRLYGDNVWAHSGDELEGLNKDFKKMLIEK 142
K+ +K + ELE ++ +G +A ++K LY + A ++ L+KDF++ L +
Sbjct: 3 KVDIKNFTLQELEAYIAGQGKERFRAKQIFKWLYQQD--AREFADMTNLSKDFRQELEKT 62
Query: 143 AEFRALSLREILPSSDGTRKILFNLEDGLIIETVVIPCDRGRTTVCVSSQVGCAMNCQFC 202
A L + S+DGT+K LF L DG +E+V+IP D RTT+C+SSQVGCAM C+FC
Sbjct: 63 AWISNLDAEAVEASADGTKKYLFRLADGNAVESVLIP-DEDRTTLCISSQVGCAMGCEFC 122
Query: 203 YTGRMGLKRHLTAAEIVEQAVFARRLLTCEVGLITNVVFMGMGEPLHNIDNVIKAANIMV 262
TG L R+LT AEIV Q +R + N+VFMGMGEPL N+ NV+ A I+
Sbjct: 123 LTGTFKLTRNLTTAEIVNQVCAVKRQEP-----VRNIVFMGMGEPLANLKNVVGALKILT 182
Query: 263 DEQGLHFSPRKVTVSTSGLVPQLKRFLHDCNCALAVSLNATTDEVRNWIMPINRKYKLGL 322
D G FS RKVTVSTSGLVP++ LAVSLNATTDEVR+ IMPINR+Y L
Sbjct: 183 DPDGFQFSTRKVTVSTSGLVPEMAELGASVTVNLAVSLNATTDEVRDRIMPINRRYPLKE 242
Query: 323 LLQTLREELRCKHNYKVLFEYVMLAGVNDSIEDAKRIVDLVQGIPCKINLISFNPHCGSQ 382
LL + + + EYVM+ GVNDS++DAKR+V L+ IP K+NLI FN H G
Sbjct: 243 LLAACKAFPLPSRRW-ITIEYVMIRGVNDSLDDAKRLVRLISNIPSKVNLIPFNEHDGCT 302
Query: 383 FRPTCKEKMIEFRNVLAAAGLTVLLRLSRGDDQMAACGQL 423
F+ ++ + +F L +TV+ R SRG D AACGQL
Sbjct: 303 FQAPTQDSIDKFHKFLLDKHVTVITRSSRGSDISAACGQL 333
BLAST of CmaCh05G000050 vs. TAIR 10
Match:
AT1G60230.1 (Radical SAM superfamily protein )
HSP 1 Score: 589.3 bits (1518), Expect = 2.5e-168
Identity = 304/452 (67.26%), Postives = 360/452 (79.65%), Query Frame = 0
Query: 1 MRRLFFPKPSMASSILAPSHFYS-------LSIPSARLCPPL-HLISFLSSAGRRFTTAS 60
MRRL + +++++ PS S L++PS L L + I F S F+ S
Sbjct: 5 MRRLGIITLTNSAAVVTPSLLSSTAAFPGTLTLPSPLLSDRLTNSILFHESRSLSFSCFS 64
Query: 61 SASPKPLFALDDSSPDFSMPEKKEILHTDSKMLLKGLSYTELEKWVKARGYRPGQALMLW 120
S+S L S ++ + + K++LKG++Y L++WV++ G+RPGQALMLW
Sbjct: 65 SSSSSSAAYL-PSLEEYPSAKGSVKRDDNQKVVLKGMTYASLQEWVQSHGFRPGQALMLW 124
Query: 121 KRLYGDNVWAHSGDELEGLNKDFKKMLIEKAEFRALSLREILPSSDGTRKILFNLEDGLI 180
KRLY DN+WA++ DELEGLNKD K+M+ E AEF ALS ++I +SDGTRKILF L+DGL+
Sbjct: 125 KRLYKDNIWANNVDELEGLNKDLKRMISEHAEFGALSFKDIRSASDGTRKILFTLDDGLV 184
Query: 181 IETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLTCE 240
IETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKR+LT AEIVEQAV+ARRLL+ E
Sbjct: 185 IETVVIPCDRGRTTVCVSSQVGCAMNCQFCYTGRMGLKRNLTTAEIVEQAVYARRLLSHE 244
Query: 241 VGLITNVVFMGMGEPLHNIDNVIKAANIMVDEQGLHFSPRKVTVSTSGLVPQLKRFLHDC 300
VG ITNVVFMGMGEP HNIDNVIKAANIMVDE GLHFSPRKVTVSTSGLVPQLKRFL +
Sbjct: 245 VGSITNVVFMGMGEPFHNIDNVIKAANIMVDENGLHFSPRKVTVSTSGLVPQLKRFLRES 304
Query: 301 NCALAVSLNATTDEVRNWIMPINRKYKLGLLLQTLREELRCKHNYKVLFEYVMLAGVNDS 360
NCALAVSLNATTDEVRNWIMPINRKYKL LLL+TLRE L +H YKVLFEYVMLAGVNDS
Sbjct: 305 NCALAVSLNATTDEVRNWIMPINRKYKLSLLLETLREGLSSRHKYKVLFEYVMLAGVNDS 364
Query: 361 IEDAKRIVDLVQGIPCKINLISFNPHCGSQFRPTCKEKMIEFRNVLAAAGLTVLLRLSRG 420
++DA+R+V+LVQGIPCKINLI FNPH GSQF T ++KMI+FRNVLA G TVL+R SRG
Sbjct: 365 MDDARRLVELVQGIPCKINLIQFNPHSGSQFIQTEEDKMIKFRNVLAEGGCTVLMRFSRG 424
Query: 421 DDQMAACGQLGKPGTIQAPLLRVPDQFQMAMK 445
+DQMAACGQLG G +QAP++RVP+QF+ A+K
Sbjct: 425 NDQMAACGQLGMIGAVQAPVMRVPEQFRTALK 455
BLAST of CmaCh05G000050 vs. TAIR 10
Match:
AT3G19630.1 (Radical SAM superfamily protein )
HSP 1 Score: 196.1 bits (497), Expect = 6.2e-50
Identity = 130/365 (35.62%), Postives = 192/365 (52.60%), Query Frame = 0
Query: 92 TELEKWVKARGYRPGQALMLWKRLY--GDNVWAHSGDELEGLNKDFKKMLIEKAEFRALS 151
+E++ ++ G P A+ +WK + D VW DE+ L +L K + S
Sbjct: 10 SEIKSEFESAGINPKFAIQIWKYVIQNPDCVW----DEIPSLPSAAYSLLHSKFKTLTSS 69
Query: 152 LREILPSSDG-TRKILFNLEDGLIIETVVIPCDRG-------------RTTVCVSSQVGC 211
L + SSDG T K+L L++G +E VV+ D R+T+C+SSQVGC
Sbjct: 70 LHSLFHSSDGTTSKLLIKLQNGAFVEAVVMRYDTRLGMLGGKPRPGGIRSTLCISSQVGC 129
Query: 212 AMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLTCEVGLITNVVFMGMGEPLHNIDNVI 271
M C FC TG MG K +LT+ EIVEQ V A R+ I N+VFMGMGEPL+N + V+
Sbjct: 130 KMGCTFCATGTMGFKSNLTSGEIVEQLVHASRIAD-----IRNIVFMGMGEPLNNYNAVV 189
Query: 272 KAANIMVDEQGLHFSPRKVTVSTSGLVPQLKRFLHDC-NCALAVSLNATTDEVRNWIMPI 331
+A +M++ Q SP+++T+ST G+V + + +D +LAVSL+A E+R IMP
Sbjct: 190 EAVRVMLN-QPFQLSPKRITISTVGIVHAINKLHNDLPGVSLAVSLHAPVQEIRCQIMPA 249
Query: 332 NRKYKLGLLLQTLREELRCKHNYKVLFEYVMLAGVNDSIEDAKRIVDLVQGIPCKINLIS 391
R + L L+ L + + K+ EY+ML GVND + A + +L++ INLI
Sbjct: 250 ARAFPLQKLMDAL-QTFQKNSQQKIFIEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIP 309
Query: 392 FNP-HCGSQFRPTCKEKMIEFRNVLAAA-GLTVLLRLSRGDDQMAACGQL--------GK 430
FNP SQF + + + F+ +L + +R G D ACGQL
Sbjct: 310 FNPIGSTSQFETSSIQGVSRFQKILRETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKT 363
BLAST of CmaCh05G000050 vs. TAIR 10
Match:
AT2G39670.1 (Radical SAM superfamily protein )
HSP 1 Score: 194.9 bits (494), Expect = 1.4e-49
Identity = 137/407 (33.66%), Postives = 214/407 (52.58%), Query Frame = 0
Query: 25 SIPSARLCPPLHLISFLSSAGRRFTTASSASPKPLFALDDSSPDFSMPEKKEILHTDSKM 84
S+P +R+ H ++ SA T SPKP+ A +P H DS +
Sbjct: 18 SVPISRMVVRRHSLATTFSAA---ATTVVPSPKPVSAKPARTP-----------HVDSHV 77
Query: 85 LLKGLSYTELEKWVKARGYRPGQALMLWKRLYGDNVWAHSGDELEGLNKDFKKMLIEKA- 144
L+ G+S EL++ G + L +Y V + ++ L F+K L++
Sbjct: 78 LI-GMSEPELQELAINLGQEGYRGKQLHHLIYKRKV--NKVEDFSNLPLTFRKGLVDGGF 137
Query: 145 EFRALSLREILPSSDGTRKILFNLEDGLIIETVVIPC---DRG--RTTVCVSSQVGCAMN 204
+ + + + ++DGT K+L LED L+IETV IP ++G R T CVSSQVGC +
Sbjct: 138 KVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITRLTACVSSQVGCPLR 197
Query: 205 CQFCYTGRMGLKRHLTAAEIVEQAVFARRLLTCEVGLITNVVFMGMGEPLHNIDNVIKAA 264
C FC TG+ G R+L EI+EQ + + V TNVVFMGMGEP+ N+ +V+ A
Sbjct: 198 CSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRV---TNVVFMGMGEPMLNLKSVLDAH 257
Query: 265 NIMVDEQGLHFSPRKVTVSTSGLVPQLKRFL-HDCNCALAVSLNATTDEVRNWIMPINRK 324
+ + + R +T+ST G+ +K+ H LAVSL+A +R I+P +
Sbjct: 258 RCL--NKDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLREKIVPSAKA 317
Query: 325 YKLGLLLQTLREELRCKHNYKVLFEYVMLAGVNDSIEDAKRIVDLVQ--GIPCKINLISF 384
Y L +++ R+ + + N +V FEY +LAGVND +E A + +L++ G +NLI +
Sbjct: 318 YPLEAIMKDCRDYFQ-ETNRRVSFEYALLAGVNDQVEHAVELAELLREWGKTYHVNLIPY 377
Query: 385 NPHCGSQFRPTCKEKMIEFRNVLAAAGLTVLLRLSRGDDQMAACGQL 423
NP GS+++ K+ ++ F L + +T +R +RG D AACGQL
Sbjct: 378 NPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQL 401
BLAST of CmaCh05G000050 vs. TAIR 10
Match:
AT2G39670.2 (Radical SAM superfamily protein )
HSP 1 Score: 192.6 bits (488), Expect = 6.9e-49
Identity = 139/414 (33.57%), Postives = 218/414 (52.66%), Query Frame = 0
Query: 25 SIPSARLCPPLHLISFLSSAGRRFTTASSASPKPLFALDDSSPDFSMPEKKEILHTDSKM 84
S+P +R+ H ++ SA T SPKP+ A +P H DS +
Sbjct: 18 SVPISRMVVRRHSLATTFSAA---ATTVVPSPKPVSAKPARTP-----------HVDSHV 77
Query: 85 LLKGLSYTELEK------WVKARGYRPGQA-LMLWKRLYGDNVWAHSGDELEGLNKDFKK 144
L+ G+S EL++ + GYR Q +++KR + ++ L F+K
Sbjct: 78 LI-GMSEPELQELAINLVLIFQEGYRGKQLHHLIYKRK------VNKVEDFSNLPLTFRK 137
Query: 145 MLIEKA-EFRALSLREILPSSDGTRKILFNLEDGLIIETVVIPC---DRG--RTTVCVSS 204
L++ + + + + ++DGT K+L LED L+IETV IP ++G R T CVSS
Sbjct: 138 GLVDGGFKVGRSPIYQTVTATDGTIKLLLKLEDNLLIETVGIPVQDDEKGITRLTACVSS 197
Query: 205 QVGCAMNCQFCYTGRMGLKRHLTAAEIVEQAVFARRLLTCEVGLITNVVFMGMGEPLHNI 264
QVGC + C FC TG+ G R+L EI+EQ + + V TNVVFMGMGEP+ N+
Sbjct: 198 QVGCPLRCSFCATGKGGFSRNLQRHEIIEQVLAIEDVFKHRV---TNVVFMGMGEPMLNL 257
Query: 265 DNVIKAANIMVDEQGLHFSPRKVTVSTSGLVPQLKRFL-HDCNCALAVSLNATTDEVRNW 324
+V+ A + + + R +T+ST G+ +K+ H LAVSL+A +R
Sbjct: 258 KSVLDAHRCL--NKDIEIGQRMITISTVGVPNTIKKLASHKLQSTLAVSLHAPNQSLREK 317
Query: 325 IMPINRKYKLGLLLQTLREELRCKHNYKVLFEYVMLAGVNDSIEDAKRIVDLVQ--GIPC 384
I+P + Y L +++ R+ + + N +V FEY +LAGVND +E A + +L++ G
Sbjct: 318 IVPSAKAYPLEAIMKDCRDYFQ-ETNRRVSFEYALLAGVNDQVEHAVELAELLREWGKTY 377
Query: 385 KINLISFNPHCGSQFRPTCKEKMIEFRNVLAAAGLTVLLRLSRGDDQMAACGQL 423
+NLI +NP GS+++ K+ ++ F L + +T +R +RG D AACGQL
Sbjct: 378 HVNLIPYNPIEGSEYQRPYKKAVLAFAAALESRKITASVRQTRGLDASAACGQL 404
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q74E53 | 7.6e-77 | 47.66 | Dual-specificity RNA methyltransferase RlmN OS=Geobacter sulfurreducens (strain ... | [more] |
A1AL40 | 3.2e-75 | 47.70 | Dual-specificity RNA methyltransferase RlmN OS=Pelobacter propionicus (strain DS... | [more] |
Q39S71 | 7.1e-75 | 47.37 | Dual-specificity RNA methyltransferase RlmN OS=Geobacter metallireducens (strain... | [more] |
Q3A2Z4 | 2.7e-74 | 44.10 | Dual-specificity RNA methyltransferase RlmN OS=Pelobacter carbinolicus (strain D... | [more] |
A5GEC2 | 5.1e-73 | 45.59 | Dual-specificity RNA methyltransferase RlmN OS=Geobacter uraniireducens (strain ... | [more] |