CmaCh04G029800 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G029800
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 19537424 .. 19537741 (-)
RNA-Seq ExpressionCmaCh04G029800
SyntenyCmaCh04G029800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAAGGTGTAGATCAGCAAGACCCCTTGTGCCCCATGGAGAAGCTATGGCTAGCAGCAGAAACACGAAGCCGATGGCGACGTCGTTGAACGCATCGCCGCGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGGGAAGATGGCTCCGCCGAACCAAAGAGTTGTTCATGAGGCCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTACGGCGTCGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTACATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTTGATCAGCTGA

mRNA sequence

ATGGATTCAAGGTGTAGATCAGCAAGACCCCTTGTGCCCCATGGAGAAGCTATGGCTAGCAGCAGAAACACGAAGCCGATGGCGACGTCGTTGAACGCATCGCCGCGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGGGAAGATGGCTCCGCCGAACCAAAGAGTTGTTCATGAGGCCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTACGGCGTCGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTACATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTTGATCAGCTGA

Coding sequence (CDS)

ATGGATTCAAGGTGTAGATCAGCAAGACCCCTTGTGCCCCATGGAGAAGCTATGGCTAGCAGCAGAAACACGAAGCCGATGGCGACGTCGTTGAACGCATCGCCGCGTTCGTGTCATGTTTCGTTTATGGTTCATCACCAAGAGAGGGGGAAGATGGCTCCGCCGAACCAAAGAGTTGTTCATGAGGCCATGAACGTTCACGAGGCTAAGTTTTGGAACGGTTACGGCGTCGTTGTCGACGAACATATCGATCGGAAGGCTGCTATGTACATATCGTCTGTGCAAGAACGGTTTAGACTTGAGGGGTTGATCAGCTGA

Protein sequence

MDSRCRSARPLVPHGEAMASSRNTKPMATSLNASPRSCHVSFMVHHQERGKMAPPNQRVVHEAMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS
Homology
BLAST of CmaCh04G029800 vs. ExPASy TrEMBL
Match: A0A0A0LQT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406070 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.7e-25
Identity = 75/113 (66.37%), Postives = 83/113 (73.45%), Query Frame = 0

Query: 1   MDSRCRSARPLVP------HGEAMASSRNTKPMATSLNASPRSCHVSFMVHHQERGKMAP 60
           MDSRCR AR LV       HGEAM  SR +K   T+ NAS  S H+SF VHHQER  MAP
Sbjct: 1   MDSRCR-ARGLVKGMVGPLHGEAMTGSR-SKITPTTSNASLCSSHISFTVHHQERALMAP 60

Query: 61  PNQRVVH-EAM-NVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 106
            N RVVH +AM NVHEA  WN YGV VDEHIDRKA++YISSVQERF+LEGLI+
Sbjct: 61  SNHRVVHDQAMNNVHEATLWNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 111

BLAST of CmaCh04G029800 vs. ExPASy TrEMBL
Match: A0A5A7UMY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00160 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-24
Identity = 76/114 (66.67%), Postives = 83/114 (72.81%), Query Frame = 0

Query: 1   MDSRCRSARPLVP------HGEAMASSRNTKPMATSLNASPRSCHVSFMVHHQERGKMAP 60
           MDSRCR AR LV       HGEAM  SR   P  T+ NAS  S H+SF VHHQER  MAP
Sbjct: 1   MDSRCR-ARGLVKGMVGPLHGEAMTGSRKMAP--TTSNASLCSSHISFTVHHQERVMMAP 60

Query: 61  PNQRV-VH-EAM-NVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 106
            N+RV VH +AM NVHEA  WN YGV VDEHIDRKAA+YISSVQERF+LEGLI+
Sbjct: 61  SNRRVLVHDQAMNNVHEATLWNLYGVGVDEHIDRKAALYISSVQERFKLEGLIN 111

BLAST of CmaCh04G029800 vs. NCBI nr
Match: KAG6602687.1 (hypothetical protein SDJN03_07920, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.5 bits (493), Expect = 4.6e-46
Identity = 97/105 (92.38%), Postives = 97/105 (92.38%), Query Frame = 0

Query: 1   MDSRCRSARPLVPHGEAMASSRNTKPMATSLNASPRSCHVSFMVHHQERGKMAPPNQRVV 60
           MDSRCRSARPLVPHGEAMASSRNTKP AT LNAS  SCHVSFMVHHQER KMA  NQRVV
Sbjct: 1   MDSRCRSARPLVPHGEAMASSRNTKPTATLLNASSCSCHVSFMVHHQERAKMASSNQRVV 60

Query: 61  HEAMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 106
           HEAMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEG IS
Sbjct: 61  HEAMNVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGSIS 105

BLAST of CmaCh04G029800 vs. NCBI nr
Match: KAA0056544.1 (hypothetical protein E6C27_scaffold288G00460 [Cucumis melo var. makuwa] >TYK02718.1 hypothetical protein E5676_scaffold1154G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 4.9e-24
Identity = 76/114 (66.67%), Postives = 83/114 (72.81%), Query Frame = 0

Query: 1   MDSRCRSARPLVP------HGEAMASSRNTKPMATSLNASPRSCHVSFMVHHQERGKMAP 60
           MDSRCR AR LV       HGEAM  SR   P  T+ NAS  S H+SF VHHQER  MAP
Sbjct: 1   MDSRCR-ARGLVKGMVGPLHGEAMTGSRKMAP--TTSNASLCSSHISFTVHHQERVMMAP 60

Query: 61  PNQRV-VH-EAM-NVHEAKFWNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 106
            N+RV VH +AM NVHEA  WN YGV VDEHIDRKAA+YISSVQERF+LEGLI+
Sbjct: 61  SNRRVLVHDQAMNNVHEATLWNLYGVGVDEHIDRKAALYISSVQERFKLEGLIN 111

BLAST of CmaCh04G029800 vs. NCBI nr
Match: KAE8652260.1 (hypothetical protein Csa_022307 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 7.1e-23
Identity = 65/94 (69.15%), Postives = 73/94 (77.66%), Query Frame = 0

Query: 14  HGEAMASSRNTKPMATSLNASPRSCHVSFMVHHQERGKMAPPNQRVVH-EAM-NVHEAKF 73
           HGEAM  SR +K   T+ NAS  S H+SF VHHQER  MAP N RVVH +AM NVHEA  
Sbjct: 134 HGEAMTGSR-SKITPTTSNASLCSSHISFTVHHQERALMAPSNHRVVHDQAMNNVHEATL 193

Query: 74  WNGYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 106
           WN YGV VDEHIDRKA++YISSVQERF+LEGLI+
Sbjct: 194 WNLYGVGVDEHIDRKASLYISSVQERFKLEGLIN 226

BLAST of CmaCh04G029800 vs. NCBI nr
Match: KAG6578363.1 (hypothetical protein SDJN03_22811, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.5 bits (249), Expect = 9.0e-18
Identity = 69/115 (60.00%), Postives = 72/115 (62.61%), Query Frame = 0

Query: 1   MDSRCRSARPLVP------HGEAMASSRNTKPMATSLNASPRSCHVSFMVHHQERGKMAP 60
           MD+RCR AR LV       HGE MAS                S HVSFMVH QER  M P
Sbjct: 1   MDARCR-ARGLVKGMLGPLHGEGMASC---------------SSHVSFMVHRQERAAMPP 60

Query: 61  PNQRVVH-EAM-NVHEAKFWN--GYGVVVDEHIDRKAAMYISSVQERFRLEGLIS 106
            NQRVVH +AM NV EA F N  G G   DEHIDRKAAMYISSVQERFRLEGLI+
Sbjct: 61  SNQRVVHDQAMNNVQEANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQT53.7e-2566.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406070 PE=4 SV=1[more]
A0A5A7UMY12.4e-2466.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAG6602687.14.6e-4692.38hypothetical protein SDJN03_07920, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0056544.14.9e-2466.67hypothetical protein E6C27_scaffold288G00460 [Cucumis melo var. makuwa] >TYK0271... [more]
KAE8652260.17.1e-2369.15hypothetical protein Csa_022307 [Cucumis sativus][more]
KAG6578363.19.0e-1860.00hypothetical protein SDJN03_22811, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availablePANTHERPTHR36030FAMILY NOT NAMEDcoord: 19..102
NoneNo IPR availablePANTHERPTHR36030:SF1SUBFAMILY NOT NAMEDcoord: 19..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G029800.1CmaCh04G029800.1mRNA