CmaCh04G028780 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G028780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr04: 19121502 .. 19124335 (-)
RNA-Seq Expression	CmaCh04G028780
Synteny	CmaCh04G028780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAGTTAGGTATGGAGCTCAATGCTGTTACTTTTTTATGTGTTCTATTTGGATGTAGCCATGGAGGTCTGGTAGAGGAAGGCCTACAGTACTTCACGCTAATGAAGGAAACTTATGGTGGTACCAGAGACGGAGCATTATTCCTGTATTGTTGATCTCTTAAGTCGTGTGGGACATCTAAACTATGCAATGGAGTTTGTAAGCACGATGCCCATAGAGCCCAATGAAATGGTTTGGCAGACCTTGTTGGGAACATGTAGGGTTCATGGTAATGTTGAATTGGGAGAGCTTGCTTCTCTGGAGATGCTTTATTTTAGGGCAAAAAACTCAGCTACCTATGTTCTTTCATCCCACCGCTAGTAGAAATTGTTCTTTTTGGGTTTTTCTTCGAGGTTTTTAAAAGGTGTCTGCTAGAGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCTGATGTGAGATCTCACAATCTACCGCCTTTGGGGCCCAGCGTCCTCGCTGGCACTCGTTCCCTTCTCCAATTGATGTGGGACCCTCCAATTCACCCCCCTTCGAGGCCCAGCATCCTTGTTGGCATAGCGCCTCGTGTCCATCCCTCTTCAGGGCTTAGCCTCCTCATTGGCACATTACCCGGTGTCTGACTCTGATACCATTGCTTGCAAATATTGTCCTTTTTGGGTTTTCCTCAAGGTTTTTAAAACGCATCTGTTAGAGAGAGGTTTCTACACTCTTATAAAGAATGTTTCGTTCTCCTCTCCAACCGATGTGGGATCTCACCCTTCGTTTGTGATATATGATGAAAGAGCAGGGCGTATAACAGGAACCAGGATGTGGTTGGATCTCTGTGAATGGTACATTGCATAAGTTTTATGCAGGTGGCCAACAAAAGATAAATTTATGCTAAGCTAGAAGAGTTTAGATTGAAGGCAAATTCTTTGGAGGATGTACTAGATTTGAGTTATGGCTGTAAGTTTTAGACCTCGGATAAGTTATACGGATACAGATGGAATCGCCCGTCCATTCAACCAAATTCATTGGGAAAAAAAAAAAAGCATCAGCCAAAGAGATCAAATTAAACAGTGAAGGCAAATGGGTGCTTAAGAACTAAATTGGCTGGCTAAATGATATAGGACTTACAGATATGATTCTCTGCATCATTCAACTCCTGCAGGTTCTGAAATATGTATGATGCTGTACTTCATTAGATAAGGAAGAATAACGATTCGGGTTATGGAAATGATAAAAAGCGCCACGGATCAATGCTCGGTTCTATGAAAATCTTTTACTTTTTGACAATATGATTGCTATGTTGGGTGAAGGTTATCAGAAGTTTGACCTCTTTCATAATAATGCATCGTTATGATGTGCTAATTTGGAATCATAAAGCCTTTCTGCTTATGATTTTACTGGGGTCTACTGAACTTTGTCATACTCGAAGCAGTAAAATTTATCGTTACGTTACACGAATAAGTTTGGTAAGATATTTCTCAAAATCATCAGCAGTGGAAATGAAGGCATTTCTCTTTTCTCTCTCCCTCTGATTTACTTTTGTTTTAACTCTCTAAATTTGTCTTTTATTTTCCCTTGGAAACATGGCCTAGTTGTTTTATTTCCTGAATTCTATTTATCATGCCAAGAAACTATTTACTGTTTCTCCCGTGAATTAGCTGAAATGAGTAATACTGTTTTAACTTATTGTTATTATTGTTATATTTTCCTTTTTTCCATAAGAGGAATTTGATTGTTCTTGAATTATTGGTTTCAGCTGCAGTGAAGTGATAACTGAAATAAAACATTTTGGCACGATCTCTCATAACTCGTTACTATGCTTCTTCTTCCCCTCCAATAACCTCACTAGGCTTTGGAGGTGTCATAAGACTGGTCTATGTCACCCAGACCCCCCAGGCATATCAGTAAAACAAAACTACTGTTCAAAAACAGTATCTGTCTTAGATAATGCATTTAGTGAGTCAATCCTTGTCTTTAGAAACATGACAGTTGAAACTTAAACGATTCTATGTGAGATCCCACATCGGTTGGGGAGGACAACGAAACATTCTTGGTAAGGGTGTGCAAACTTCTTCCTAGGAGACACGTTTTAAAAACTTTGAGGGAAAGTCCAAAAAGGACAATGTTGCTAGCAATAGGCTTTGACTAGTACATTCTACCTGGCTTATATTTACTATTGACATATCATCTATGGTTCCATGATTCTGGGTCAACGTTCCAGATTTTATTGACCTGAAACTCTTGTTGTCTACCAGAGCTGACTTTGGAGCAAATGGAGCAGAGTTTTTCTGAAGATTAATGCAAGAGGTGGAGTTTTGGATGCCTCGAGGTCGGAATCGAAGAGAGGAAGAGGAAATAGGGCTCCTTGTTTATGGGGTTGAAGAAGAAAAAAGTGGGTAAAGTGAGTTGCATGGGGGAGGGGGAAAATTGTGTGCCATTCAGGGACTATCCAAAAACCAATAACGAGACACAACAGTTGAAAGGCTGTTTTATGAAATGTCTTGTGGGTATGGCCCTCGCAGTGTTTGCTTGCTTGCTTGTAGTGCCATTATCTGTGGTCCTTTTGCTGGATTTATATGCCTACTTCCTTAACATGTGAAGAAGATGGGACAACCGACTTCCAGTGCGCGCACATATATATATATACATATACATACATATATGTATCCATCTCCAAGCCTAGAAACCGCCCCCGTGACCTGAAATGTTCAAATCTTTCTGTCAACATCAGTGGGGCATCAACAATATGGTACGTCTCTAAACTCAATGCTATACATTTTTCATTTTGTTGCTGCTTATACAGATTTATTCACGTTAA

mRNA sequence

ATGGAGCAGTTAGGTATGGAGCTCAATGCTGTTACTTTTTTATGTGTTCTATTTGGATGTAGCCATGGAGGTCTGGTAGAGGAAGGCCTACAGTACTTCACGCTAATGAAGGAAACTTATGGTGGTACCAGAGACGGAGCATTATTCCTTCGTGTGGGACATCTAAACTATGCAATGGAGTTTGTAAGCACGATGCCCATAGAGCCCAATGAAATGGTTTGGCAGACCTTGTTGGGAACATGTAGGATTTATTCACGTTAA

Coding sequence (CDS)

ATGGAGCAGTTAGGTATGGAGCTCAATGCTGTTACTTTTTTATGTGTTCTATTTGGATGTAGCCATGGAGGTCTGGTAGAGGAAGGCCTACAGTACTTCACGCTAATGAAGGAAACTTATGGTGGTACCAGAGACGGAGCATTATTCCTTCGTGTGGGACATCTAAACTATGCAATGGAGTTTGTAAGCACGATGCCCATAGAGCCCAATGAAATGGTTTGGCAGACCTTGTTGGGAACATGTAGGATTTATTCACGTTAA

Protein sequence

MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGALFLRVGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYSR

Homology

[Close]

BLAST of CmaCh04G028780 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-14
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 5   GMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGALFL----RVGHLNY 64
           G+    VTFLCVL+ CSH GLV+EG + F  M   YG     +  A  +    R GHL  
Sbjct: 516 GITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQR 575

Query: 65  AMEFVSTMPIEPNEMVWQTLLGTCRIY 85
           A++F+  M IEP   VW+TLLG CRI+
Sbjct: 576 ALQFIEAMSIEPGSSVWETLLGACRIH 602

[Close]

BLAST of CmaCh04G028780 vs. ExPASy Swiss-Prot
Match: Q9LFL5 (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.1e-14
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVG 60
           M ++G +L+ VT L VL+ CSH G++++G++YF  MK  +G   G    A    L  R G
Sbjct: 570 MRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAG 629

Query: 61  HLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYSR 87
            LN A+  +  MP+EP  +VW   L  CRI+ +
Sbjct: 630 RLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGK 662

[Close]

BLAST of CmaCh04G028780 vs. ExPASy Swiss-Prot
Match: Q9LXF2 (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E40 PE=2 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-14
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKET---------YGGTRDGALFLR 60
           M++L +  N VTF+ V+  CSH G V+EG +YF+LM++          YG   D  +  R
Sbjct: 371 MQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVD--MLGR 430

Query: 61  VGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY 85
            G L  A  FV +M IEPN +VW+TLLG C+IY
Sbjct: 431 AGQLEEAFMFVESMKIEPNAIVWRTLLGACKIY 461

[Close]

BLAST of CmaCh04G028780 vs. ExPASy Swiss-Prot
Match: Q9CA73 (Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E68 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 9   NAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEF 68
           N VTF+ VL  CSH GLVEEG ++F  M   Y      A       LF R GHL  A EF
Sbjct: 275 NDVTFIGVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHFGCMVDLFCRSGHLKDAHEF 334

Query: 69  VSTMPIEPNEMVWQTLLGTCRIY 85
           ++ MPI+PN ++W+TLLG C ++
Sbjct: 335 INQMPIKPNTVIWRTLLGACSLH 357

[Close]

BLAST of CmaCh04G028780 vs. ExPASy Swiss-Prot
Match: Q9LS72 (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-13
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMK---------ETYGGTRDGALFLR 60
           M + G+  + VTF+ VL  C+H GL++EG+ YF  M+         E YG   D  L  R
Sbjct: 407 MRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVD--LLGR 466

Query: 61  VGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYS 86
           VG L  A++ V TMP+EPN ++W  LLG CR+++
Sbjct: 467 VGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHN 498

[Close]

BLAST of CmaCh04G028780 vs. ExPASy TrEMBL
Match: A0A6J1JX63 (pentatricopeptide repeat-containing protein At2g27610-like OS=Cucurbita maxima OX=3661 GN=LOC111489649 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 66/91 (72.53%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVG 60
           MEQLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   G    +    L  RVG
Sbjct: 566 MEQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKETYGLVPGMEHYSCIVDLLSRVG 625

Query: 61  HLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY 85
            LN AMEF+S MPIEPNEMVWQTLLG CR++
Sbjct: 626 RLNDAMEFISKMPIEPNEMVWQTLLGACRVH 656

[Close]

BLAST of CmaCh04G028780 vs. ExPASy TrEMBL
Match: A0A6J1FGJ6 (pentatricopeptide repeat-containing protein At3g16610-like OS=Cucurbita moschata OX=3662 GN=LOC111445205 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 66/91 (72.53%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVG 60
           MEQLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   G    +    L  RVG
Sbjct: 566 MEQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKETYGLVPGMEHYSCIVDLLSRVG 625

Query: 61  HLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY 85
            LN AMEF+S MPIEPNEMVWQTLLG CR++
Sbjct: 626 RLNDAMEFISKMPIEPNEMVWQTLLGACRVH 656

[Close]

BLAST of CmaCh04G028780 vs. ExPASy TrEMBL
Match: A0A0A0KBQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013890 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.5e-27
Identity = 63/91 (69.23%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVG 60
           M QLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMK+TYG   +         L  RVG
Sbjct: 556 MVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVG 615

Query: 61  HLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY 85
           HLN AMEF+S MP+EPNEMVWQTLLG CR++
Sbjct: 616 HLNDAMEFISRMPVEPNEMVWQTLLGACRVH 646

[Close]

BLAST of CmaCh04G028780 vs. ExPASy TrEMBL
Match: A0A6J1BXL8 (pentatricopeptide repeat-containing protein At2g33680-like OS=Momordica charantia OX=3673 GN=LOC111006636 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.9e-26
Identity = 62/91 (68.13%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVG 60
           MEQLG++ NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   +         L  RVG
Sbjct: 558 MEQLGVKPNAVTFLCVLFACSHGGLVEEGLQYFKLMKETYGLEPEMEHYSCIVDLLSRVG 617

Query: 61  HLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY 85
            LN A+EF+  MPIEPNEMVWQTLLG CR++
Sbjct: 618 RLNDAIEFIRKMPIEPNEMVWQTLLGACRVH 648

[Close]

BLAST of CmaCh04G028780 vs. ExPASy TrEMBL
Match: A0A5D3C2B1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001490 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.9e-24
Identity = 60/91 (65.93%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVG 60
           M  LG+E NAVTFLCVLF CSHGGLVEEGLQYF LMK+TYG   +         L  RVG
Sbjct: 583 MVLLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVG 642

Query: 61  HLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY 85
            LN AM F+S MP+EPNEMVWQTLLG CR++
Sbjct: 643 RLNDAMGFISKMPVEPNEMVWQTLLGACRVH 673

[Close]

BLAST of CmaCh04G028780 vs. NCBI nr
Match: XP_022993736.1 (pentatricopeptide repeat-containing protein At2g27610-like [Cucurbita maxima])

HSP 1 Score: 131.0 bits (328), Expect = 5.1e-27
Identity = 66/91 (72.53%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVG 60
           MEQLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   G    +    L  RVG
Sbjct: 566 MEQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKETYGLVPGMEHYSCIVDLLSRVG 625

Query: 61  HLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY 85
            LN AMEF+S MPIEPNEMVWQTLLG CR++
Sbjct: 626 RLNDAMEFISKMPIEPNEMVWQTLLGACRVH 656

[Close]

BLAST of CmaCh04G028780 vs. NCBI nr
Match: XP_022939229.1 (pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita moschata] >KAG6578466.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 5.1e-27
Identity = 66/91 (72.53%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVG 60
           MEQLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   G    +    L  RVG
Sbjct: 566 MEQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKETYGLVPGMEHYSCIVDLLSRVG 625

Query: 61  HLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY 85
            LN AMEF+S MPIEPNEMVWQTLLG CR++
Sbjct: 626 RLNDAMEFISKMPIEPNEMVWQTLLGACRVH 656

[Close]

BLAST of CmaCh04G028780 vs. NCBI nr
Match: KAG7016032.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.0 bits (328), Expect = 5.1e-27
Identity = 66/91 (72.53%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVG 60
           MEQLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   G    +    L  RVG
Sbjct: 548 MEQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKETYGLVPGMEHYSCIVDLLSRVG 607

Query: 61  HLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY 85
            LN AMEF+S MPIEPNEMVWQTLLG CR++
Sbjct: 608 RLNDAMEFISKMPIEPNEMVWQTLLGACRVH 638

[Close]

BLAST of CmaCh04G028780 vs. NCBI nr
Match: XP_011656423.1 (putative pentatricopeptide repeat-containing protein At3g25970 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 63/91 (69.23%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVG 60
           M QLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMK+TYG   +         L  RVG
Sbjct: 566 MVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVG 625

Query: 61  HLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY 85
           HLN AMEF+S MP+EPNEMVWQTLLG CR++
Sbjct: 626 HLNDAMEFISRMPVEPNEMVWQTLLGACRVH 656

[Close]

BLAST of CmaCh04G028780 vs. NCBI nr
Match: XP_023549692.1 (pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 65/91 (71.43%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVG 60
           M+QLG+E NAVTFLCVLF CSHGGLVEEGLQYF LMKETYG   G    +    L  RVG
Sbjct: 566 MDQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKETYGLVPGMEHYSCIVDLLSRVG 625

Query: 61  HLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY 85
            LN AMEF+S MPIEPNEMVWQTLLG CR++
Sbjct: 626 RLNDAMEFISKMPIEPNEMVWQTLLGACRVH 656

[Close]

BLAST of CmaCh04G028780 vs. TAIR 10
Match: AT4G30700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 9.6e-16
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 0


Query: 5   GMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGALFL----RVGHLNY 64
           G+    VTFLCVL+ CSH GLV+EG + F  M   YG     +  A  +    R GHL  
Sbjct: 516 GITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQR 575

Query: 65  AMEFVSTMPIEPNEMVWQTLLGTCRIY 85
           A++F+  M IEP   VW+TLLG CRI+
Sbjct: 576 ALQFIEAMSIEPGSSVWETLLGACRIH 602

[Close]

BLAST of CmaCh04G028780 vs. TAIR 10
Match: AT5G16860.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-15
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYG---GTRDGA----LFLRVG 60
           M ++G +L+ VT L VL+ CSH G++++G++YF  MK  +G   G    A    L  R G
Sbjct: 570 MRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAG 629

Query: 61  HLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYSR 87
            LN A+  +  MP+EP  +VW   L  CRI+ +
Sbjct: 630 RLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGK 662

[Close]

BLAST of CmaCh04G028780 vs. TAIR 10
Match: AT5G15300.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 4.7e-15
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMKET---------YGGTRDGALFLR 60
           M++L +  N VTF+ V+  CSH G V+EG +YF+LM++          YG   D  +  R
Sbjct: 371 MQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVD--MLGR 430

Query: 61  VGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIY 85
            G L  A  FV +M IEPN +VW+TLLG C+IY
Sbjct: 431 AGQLEEAFMFVESMKIEPNAIVWRTLLGACKIY 461

[Close]

BLAST of CmaCh04G028780 vs. TAIR 10
Match: AT1G74400.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 8.1e-15
Identity = 39/83 (46.99%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 9   NAVTFLCVLFGCSHGGLVEEGLQYFTLMKETYGGTRDGA-------LFLRVGHLNYAMEF 68
           N VTF+ VL  CSH GLVEEG ++F  M   Y      A       LF R GHL  A EF
Sbjct: 275 NDVTFIGVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHFGCMVDLFCRSGHLKDAHEF 334

Query: 69  VSTMPIEPNEMVWQTLLGTCRIY 85
           ++ MPI+PN ++W+TLLG C ++
Sbjct: 335 INQMPIKPNTVIWRTLLGACSLH 357

[Close]

BLAST of CmaCh04G028780 vs. TAIR 10
Match: AT3G29230.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-14
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1   MEQLGMELNAVTFLCVLFGCSHGGLVEEGLQYFTLMK---------ETYGGTRDGALFLR 60
           M + G+  + VTF+ VL  C+H GL++EG+ YF  M+         E YG   D  L  R
Sbjct: 407 MRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVD--LLGR 466

Query: 61  VGHLNYAMEFVSTMPIEPNEMVWQTLLGTCRIYS 86
           VG L  A++ V TMP+EPN ++W  LLG CR+++
Sbjct: 467 VGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHN 498

The following BLAST results are available for this feature:

BLAST of CmaCh04G028780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUH6	1.3e-14	45.98	Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX...	[more]
Q9LFL5	5.1e-14	38.71	Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX...	[more]
Q9LXF2	6.7e-14	44.09	Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX...	[more]
Q9CA73	1.1e-13	46.99	Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis th...	[more]
Q9LS72	1.9e-13	41.49	Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmaCh04G028780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JX63	2.5e-27	72.53	pentatricopeptide repeat-containing protein At2g27610-like OS=Cucurbita maxima O...	[more]
A0A6J1FGJ6	2.5e-27	72.53	pentatricopeptide repeat-containing protein At3g16610-like OS=Cucurbita moschata...	[more]
A0A0A0KBQ4	5.5e-27	69.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013890 PE=4 SV=1	[more]
A0A6J1BXL8	7.9e-26	68.13	pentatricopeptide repeat-containing protein At2g33680-like OS=Momordica charanti...	[more]
A0A5D3C2B1	1.9e-24	65.93	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of CmaCh04G028780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993736.1	5.1e-27	72.53	pentatricopeptide repeat-containing protein At2g27610-like [Cucurbita maxima]	[more]
XP_022939229.1	5.1e-27	72.53	pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita moschata] ...	[more]
KAG7016032.1	5.1e-27	72.53	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_011656423.1	1.1e-26	69.23	putative pentatricopeptide repeat-containing protein At3g25970 [Cucumis sativus]	[more]
XP_023549692.1	1.1e-26	71.43	pentatricopeptide repeat-containing protein At3g16610-like [Cucurbita pepo subsp...	[more]

BLAST of CmaCh04G028780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30700.1	9.6e-16	45.98	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G16860.1	3.6e-15	38.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G15300.1	4.7e-15	44.09	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G74400.1	8.1e-15	46.99	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G29230.1	1.4e-14	41.49	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..86 e-value: 4.1E-10 score: 41.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 11..38 e-value: 0.0028 score: 15.7
None	No IPR available	PANTHER	PTHR24015:SF1875	PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G028780.1	CmaCh04G028780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding