CmaCh04G028070 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G028070
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ribosome biogenesis protein BOP1 homolog isoform X1
Location	Cma_Chr04: 18792163 .. 18794842 (+)
RNA-Seq Expression	CmaCh04G028070
Synteny	CmaCh04G028070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAATGTTTTGATTTTTTTTTTTCATATCGAAGTGAAATGTTTAAACTGATACAAATTAAAGGCACTAACTTTTGTTGAGATCCATCATCGGCTTCAATATTACAAACCCTTCCTTTTTATTTGTGTTCTTACTGAATTGGGCGGCTCTATTTCTCAATCTGAAAAAAAGAAAATTAGGGTTTAGTGCAAAGCCCGCGATACTCAGAATGAACAGCAAGCACGGTGCTCCGAAGCACCAAAACAAATACGCTTGGAAACCCAACGCCGGCCGCAAAATCAACGAAACGGAGGTTGGAGGCAGATTCCGGCCACTATCCGAGATCACTGGAGTTTGTCTTCGCTGCAAGGACCAAATTGATTGGAAACGCCGTTACGGCAAATACAAACCCCTTTCTGAACCTGCTAAATGGTACGTATTCCTTTTCATTTTCTTTCTTTCTTTCTTCTATTTGTTAATTTGTCTATCTCTCTGAAGATGGGTTGCAAATTTTAGTTCTCGAATTGATTGAATGTATCGCAGTCAACTTTGTTCGAAGCGGGCTGTTCGTCAAGCGTATCATAATCTCTGTCCTGGTCAGTTTAATTCTCAGTATCTCACTTGTTTATGTGGGTTTAATTTGTTCTAAACAAATAATACTTCTAGGGGGAAATATGTCATTATGAACAGGAAGTTGTTCCACCCCTTGTTTATGTGTATCTTAAGTTTTCTACCTGGAACTGATGTTCATGTAGGCTGTGCCAAGCAGCAAGGTGTATGCGCTAAGTGTCGCTGTCGTGTTGACCAAACCATTGGAAGGTGTGTTTATATTCATTACTGAATGTTAATGCCTGAATCTTGTGCACTGAATCTATATTCAAATTTTGATGTCTTTAGCCAAGAAGTTTGTGAAATATTAAGGCCTTTCCATCTGCCCCTGTTGTAGGGATATTTCTGAAGTCGAGGCTGAGCAAAAGATGCTTCAAGAGGTATGATTTGGCACTCATTCGATGGTGATAAATTTTCAACTATAGCTTACAGATTTGGTGATTGCTGCAGGCCATAAAGAATGCTCGAGAAAGGGATAAAAGAACTCTATTACGTGCTGTAAGCTTCCTGTTCTCTTGATTTTGTTTAATTGCCTACAGAATGAATCCATGAAAGAGATTTGGTGAATCAAATAGATTTTTGGCACTTCAAGAACATTCGTCTAGTATTTCAGAATTGAGAGGAGGCTTACGTTTAGCTTTATCACCCCCTATTGTTTTCTGTTTGGGGAAAAGTCTTTTCTCAACCTTACCTACATCTAGCGCTCGTGTTCATGTGAGGACTCGTATAGAGCTAGTCGTAAATAAGGTTAAACTTAAAAGTTGAGTGAGTTGTTTTGGGTGTGAGGAAATTATTCAAGTAGTCCACCGCAACATAGTTGTCGGGAAATTGTAGAAATACTACTAATTTGTATTTAGTAGTAATTCGAGGCATTTACATTTTCAAACTTGTATTCAATTGATATTTGGGGTAGACACATTGTGGTGGCCTCATTAAATAATTTCCATGAGGTGGTCGTGAGATTTTTTATGTTGGTTTGCCCTTCTTCGGTCGGGTCATAGCCATAAAGTCTTGTCATTCTAGGAAATACTGGTTGGTATGTTGAAAAATGACACCGCCAACAGTAGGAATTCATTGTGAGTGTTTTTGGGCACCTCTAGGATTCCTTCGAAAGGAATCTCAAATTGTTTTACCACTTGTTTGTTATATATTCTGTTAATGGTGGCGCTCTATCCCACTTTAGTTCCTCGGTTTATATCTTCATTCTCACTAAGAATCCTTTTCCTCTGTTTGCTTTGTTGAGGGGTCATTCCTAAATGGAGGTTGCCCTATTTGATGTCTTGATCCTTTTAACGTTTTTCTTTGGTGGGTGTGTTTTTTTTTTTTCTTTTTCTCATTCATCTTAGTAAAAGCTGGTTCTTTTTCATATAAAATTGAAGTAGCTTTGTAGCTAAGTATCACATTGTCATTTCTAGTGTGATTTTCTTCTGTCACATCCTTTGTTTTGTTTTCTGCTAAGAACATATCCCCATTCACGCATGCTGATGTACGTAAGACCATCAAATATAGATGCTTGTATATTTACAAGTACATAGCAATGGTTATGAAATTTCTACACCAGCTGCTAAATGAAATGCCCTTGTAGTGTGTTGGTTCCTCTGGTTTTTCCCCCTCTTCCTGCCTGATGCATATTTTAATTCATTTTATCGAAACAGATGGAAAAAGGCAAAAGTAAGACTTCAAACAAGAATAAATCTGCAGATGAAGAAAGTAAGACTGGGGATTCAATTCCTTCGTCAACAGAAGAGCAGGCTGCATTAGGCAGAACAGAGGAGGACGACGACAATGAAAGTACTGATGGCACAGATGAAGATGCTTATGAAGACGAAGATGAATGTGAAAATGAAGAGAAGGATAAAGATGAAAACGAGGAATAGTACATTAATCTTGATTAGGGGTATGATTTTGGCATGAGTCGTTTGATGAACAATATCTATTTGAAAGGCAATTTTGATGGGTCCTTTTGTTTTTAAGAGTTCGTTTGCTTGTACTATCAAGATCTATCGTTTTATAAAAAAATTTACAACACAGCCTGATAAAAATTTGGGATGTTGAGATTTGCAAAAGTATTTGAAAACTGAACGAGTTCTACG

mRNA sequence

TTAATGTTTTGATTTTTTTTTTTCATATCGAAGTGAAATGTTTAAACTGATACAAATTAAAGGCACTAACTTTTGTTGAGATCCATCATCGGCTTCAATATTACAAACCCTTCCTTTTTATTTGTGTTCTTACTGAATTGGGCGGCTCTATTTCTCAATCTGAAAAAAAGAAAATTAGGGTTTAGTGCAAAGCCCGCGATACTCAGAATGAACAGCAAGCACGGTGCTCCGAAGCACCAAAACAAATACGCTTGGAAACCCAACGCCGGCCGCAAAATCAACGAAACGGAGGTTGGAGGCAGATTCCGGCCACTATCCGAGATCACTGGAGTTTGTCTTCGCTGCAAGGACCAAATTGATTGGAAACGCCGTTACGGCAAATACAAACCCCTTTCTGAACCTGCTAAATGTCAACTTTGTTCGAAGCGGGCTGTTCGTCAAGCGTATCATAATCTCTGTCCTGGCTGTGCCAAGCAGCAAGGTGTATGCGCTAAGTGTCGCTGTCGTGTTGACCAAACCATTGGAAGGGATATTTCTGAAGTCGAGGCTGAGCAAAAGATGCTTCAAGAGGCCATAAAGAATGCTCGAGAAAGGGATAAAAGAACTCTATTACGTGCTATGGAAAAAGGCAAAAGTAAGACTTCAAACAAGAATAAATCTGCAGATGAAGAAAGTAAGACTGGGGATTCAATTCCTTCGTCAACAGAAGAGCAGGCTGCATTAGGCAGAACAGAGGAGGACGACGACAATGAAAGTACTGATGGCACAGATGAAGATGCTTATGAAGACGAAGATGAATGTGAAAATGAAGAGAAGGATAAAGATGAAAACGAGGAATAGTACATTAATCTTGATTAGGGGTATGATTTTGGCATGAGTCGTTTGATGAACAATATCTATTTGAAAGGCAATTTTGATGGGTCCTTTTGTTTTTAAGAGTTCGTTTGCTTGTACTATCAAGATCTATCGTTTTATAAAAAAATTTACAACACAGCCTGATAAAAATTTGGGATGTTGAGATTTGCAAAAGTATTTGAAAACTGAACGAGTTCTACG

Coding sequence (CDS)

ATGAACAGCAAGCACGGTGCTCCGAAGCACCAAAACAAATACGCTTGGAAACCCAACGCCGGCCGCAAAATCAACGAAACGGAGGTTGGAGGCAGATTCCGGCCACTATCCGAGATCACTGGAGTTTGTCTTCGCTGCAAGGACCAAATTGATTGGAAACGCCGTTACGGCAAATACAAACCCCTTTCTGAACCTGCTAAATGTCAACTTTGTTCGAAGCGGGCTGTTCGTCAAGCGTATCATAATCTCTGTCCTGGCTGTGCCAAGCAGCAAGGTGTATGCGCTAAGTGTCGCTGTCGTGTTGACCAAACCATTGGAAGGGATATTTCTGAAGTCGAGGCTGAGCAAAAGATGCTTCAAGAGGCCATAAAGAATGCTCGAGAAAGGGATAAAAGAACTCTATTACGTGCTATGGAAAAAGGCAAAAGTAAGACTTCAAACAAGAATAAATCTGCAGATGAAGAAAGTAAGACTGGGGATTCAATTCCTTCGTCAACAGAAGAGCAGGCTGCATTAGGCAGAACAGAGGAGGACGACGACAATGAAAGTACTGATGGCACAGATGAAGATGCTTATGAAGACGAAGATGAATGTGAAAATGAAGAGAAGGATAAAGATGAAAACGAGGAATAG

Protein sequence

MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYKPLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQEAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEDDDNESTDGTDEDAYEDEDECENEEKDKDENEE

Homology

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BLAST of CmaCh04G028070 vs. ExPASy Swiss-Prot
Match: Q96MD7 (Uncharacterized protein C9orf85 OS=Homo sapiens OX=9606 GN=C9orf85 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.6e-14
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 9   KHQNKYAWKPNA-GRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYKPLSEPAK 68
           KHQN +++K +   + +   ++  +        GVC RCK+ ++W+ +Y KYKPLS+P K
Sbjct: 15  KHQNTFSFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWRVKYSKYKPLSKPKK 74

Query: 69  CQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTI 106
           C  C ++ V+ +YH +C  CA +  VCAKC  + D  I
Sbjct: 75  CVKCLQKTVKDSYHIMCRPCACELEVCAKCGKKEDIVI 107

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BLAST of CmaCh04G028070 vs. ExPASy Swiss-Prot
Match: Q9CQ90 (Uncharacterized protein C9orf85 homolog OS=Mus musculus OX=10090 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-13
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 9  KHQNKYAWKPNA-GRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYKPLSEPAK 68
          KHQN + +K +   + +   ++  +        GVC RCK+ ++W+ +Y KYKPLS+P K
Sbjct: 15 KHQNTFTFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWRVKYSKYKPLSKPKK 74

Query: 69 CQLCSKRAVRQAYHNLCPGCAKQQGVCAKC 98
          C  C ++ V+ +YH +C  CA +  VCAKC
Sbjct: 75 CVKCLQKTVKDSYHIMCRPCACELEVCAKC 99

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BLAST of CmaCh04G028070 vs. ExPASy Swiss-Prot
Match: Q68FU5 (Uncharacterized protein C9orf85 homolog OS=Rattus norvegicus OX=10116 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-13
Identity = 34/90 (37.78%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 9  KHQNKYAWKPNA-GRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYKPLSEPAK 68
          KHQN + +K +   + +   ++  +        GVC RCK+ ++W+ +Y KYKPLS+P K
Sbjct: 15 KHQNTFTFKNDKFDKSVQTKKINAKLH-----DGVCQRCKEVLEWRVKYSKYKPLSKPKK 74

Query: 69 CQLCSKRAVRQAYHNLCPGCAKQQGVCAKC 98
          C  C ++ V+ +YH +C  CA +  VCAKC
Sbjct: 75 CVKCLQKTVKDSYHIMCRPCACKLEVCAKC 99

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BLAST of CmaCh04G028070 vs. ExPASy TrEMBL
Match: A0A6J1JP90 (ribosome biogenesis protein BOP1 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487658 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.4e-108
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEDDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEDDD
Sbjct: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEDDD 180

Query: 181 NESTDGTDEDAYEDEDECENEEKDKDENEE 211
           NESTDGTDEDAYEDEDECENEEKDKDENEE
Sbjct: 181 NESTDGTDEDAYEDEDECENEEKDKDENEE 210

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BLAST of CmaCh04G028070 vs. ExPASy TrEMBL
Match: A0A6J1GR32 (glutamic acid-rich protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456734 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.6e-104
Identity = 206/211 (97.63%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           M+SKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTE-EDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTE +DD
Sbjct: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEDDDD 180

Query: 181 DNESTDGTDEDAYEDEDECENEEKDKDENEE 211
           DNESTD TDEDA EDEDECENEEKDKDENEE
Sbjct: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 211

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BLAST of CmaCh04G028070 vs. ExPASy TrEMBL
Match: A0A1S3CAL0 (uncharacterized protein LOC103498541 OS=Cucumis melo OX=3656 GN=LOC103498541 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 5.2e-87
Identity = 175/209 (83.73%), Postives = 191/209 (91.39%), Query Frame = 0


Query: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           M++K G PKHQN+YAWKPNAGRKINETEVGGRFRPLS+ITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MSNKQGPPKHQNRYAWKPNAGRKINETEVGGRFRPLSDITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKR VRQAYHNLCPGCAK+QGVCAKCRCRVDQT+GRD+SEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRNVRQAYHNLCPGCAKEQGVCAKCRCRVDQTVGRDLSEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSA-DEESKTGDSIPSSTEEQAALGRTEEDD 180
           EAIKNARERD+RTLLRAMEKGK+K+SNKNKSA  EE+K GDSI S TE+QA +GR E  D
Sbjct: 121 EAIKNARERDRRTLLRAMEKGKAKSSNKNKSAVTEETKVGDSIHSPTEDQAEIGRNE--D 180

Query: 181 DNESTDGTDEDAYEDED--ECENEEKDKD 207
           DNE TD TD+D YE+ED  ECENEE DK+
Sbjct: 181 DNEITDDTDDDNYENEDEHECENEENDKE 207

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BLAST of CmaCh04G028070 vs. ExPASy TrEMBL
Match: A0A0A0KSJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640570 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.2e-85
Identity = 177/212 (83.49%), Postives = 191/212 (90.09%), Query Frame = 0


Query: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           M++K G PKHQNKYAWKPNAGRKINETEVGGRFRPLS+ITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MSNKQGPPKHQNKYAWKPNAGRKINETEVGGRFRPLSDITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEP KCQLCSKR VRQAYHNLCPGCAK+QGVCAKCRCRVDQT+GRD+SEVEAEQKMLQ
Sbjct: 61  PLSEPTKCQLCSKRNVRQAYHNLCPGCAKEQGVCAKCRCRVDQTVGRDLSEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSA-DEESKTGDSIPSSTEEQAALGRTEEDD 180
           EAIKNARERD+RTLLRAMEKGK+K+SNKNKSA +EE+K GDSI S TE QA +GR E  D
Sbjct: 121 EAIKNARERDRRTLLRAMEKGKAKSSNKNKSAVEEETKDGDSIHSPTEVQAEIGRNE--D 180

Query: 181 DNESTDGTDEDAYEDED--ECENEEKDKDENE 210
           DNESTD TD D YE+ED  ECEN EKD+D  E
Sbjct: 181 DNESTDDTDGDNYENEDEHECEN-EKDEDGKE 209

[Close]

BLAST of CmaCh04G028070 vs. ExPASy TrEMBL
Match: A0A6J1BX54 (uncharacterized protein LOC111006305 OS=Momordica charantia OX=3673 GN=LOC111006305 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.8e-79
Identity = 164/201 (81.59%), Postives = 180/201 (89.55%), Query Frame = 0


Query: 3   SKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYKPL 62
           +K G PKHQN+YAWKPNAG KINETEVGGRFRPLS+ITGVCLRCKDQIDWKRRYGKYKPL
Sbjct: 5   AKAGPPKHQNRYAWKPNAGVKINETEVGGRFRPLSQITGVCLRCKDQIDWKRRYGKYKPL 64

Query: 63  SEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQEA 122
           +EPAKCQLCSKRAVRQAYHNLCPGCAK+QGVCAKCRCRVD T+GRD SEVEAEQKMLQEA
Sbjct: 65  AEPAKCQLCSKRAVRQAYHNLCPGCAKEQGVCAKCRCRVDHTVGRDASEVEAEQKMLQEA 124

Query: 123 IKNARERDKRTLLRAMEKGKSKTSNKNKSA-DEESKTGDSIPSSTEEQAALGRTEEDDDN 182
           I+NARERDKRTLLRAM KGKSKTS+K+KSA  EE+K GD  P S EE A LGR E  DDN
Sbjct: 125 IRNARERDKRTLLRAMNKGKSKTSDKSKSAVKEETKVGDLTP-SIEEHAKLGRKE--DDN 184

Query: 183 ESTDGTDEDAYEDEDECENEE 203
           + TDG++ED+ E+EDE ENE+
Sbjct: 185 DITDGSNEDSDENEDEDENED 202

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BLAST of CmaCh04G028070 vs. NCBI nr
Match: XP_022990906.1 (ribosome biogenesis protein BOP1 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 402.1 bits (1032), Expect = 2.9e-108
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEDDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEDDD
Sbjct: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEDDD 180

Query: 181 NESTDGTDEDAYEDEDECENEEKDKDENEE 211
           NESTDGTDEDAYEDEDECENEEKDKDENEE
Sbjct: 181 NESTDGTDEDAYEDEDECENEEKDKDENEE 210

[Close]

BLAST of CmaCh04G028070 vs. NCBI nr
Match: KAG6602535.1 (Eukaryotic translation initiation factor 3 subunit M, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 393.3 bits (1009), Expect = 1.3e-105
Identity = 206/210 (98.10%), Postives = 208/210 (99.05%), Query Frame = 0


Query: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           M+SKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 427 MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 486

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 487 PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 546

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEDDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTE+DDD
Sbjct: 547 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEDDDD 606

Query: 181 NESTDGTDEDAYEDEDECENEEKDKDENEE 211
           NESTD TDEDA EDEDECENEEKDKDENEE
Sbjct: 607 NESTDDTDEDAIEDEDECENEEKDKDENEE 636

[Close]

BLAST of CmaCh04G028070 vs. NCBI nr
Match: KAG7033212.1 (hypothetical protein SDJN02_07266 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 393.3 bits (1009), Expect = 1.3e-105
Identity = 206/210 (98.10%), Postives = 208/210 (99.05%), Query Frame = 0


Query: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           M+SKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEDDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTE+DDD
Sbjct: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEDDDD 180

Query: 181 NESTDGTDEDAYEDEDECENEEKDKDENEE 211
           NESTD TDEDA EDEDECENEEKDKDENEE
Sbjct: 181 NESTDDTDEDAIEDEDECENEEKDKDENEE 210

[Close]

BLAST of CmaCh04G028070 vs. NCBI nr
Match: XP_023538167.1 (glutamic acid-rich protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 389.8 bits (1000), Expect = 1.5e-104
Identity = 207/211 (98.10%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           M+SKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRT-EEDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRT EEDD
Sbjct: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEEEDD 180

Query: 181 DNESTDGTDEDAYEDEDECENEEKDKDENEE 211
           DNESTD TDEDA EDEDECENEEKDKDENEE
Sbjct: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 211

[Close]

BLAST of CmaCh04G028070 vs. NCBI nr
Match: XP_022954477.1 (glutamic acid-rich protein isoform X1 [Cucurbita moschata])

HSP 1 Score: 388.7 bits (997), Expect = 3.3e-104
Identity = 206/211 (97.63%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           M+SKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK
Sbjct: 1   MSSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
           PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ
Sbjct: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120

Query: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTE-EDD 180
           EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTE +DD
Sbjct: 121 EAIKNARERDKRTLLRAMEKGKSKTSNKNKSADEESKTGDSIPSSTEEQAALGRTEDDDD 180

Query: 181 DNESTDGTDEDAYEDEDECENEEKDKDENEE 211
           DNESTD TDEDA EDEDECENEEKDKDENEE
Sbjct: 181 DNESTDDTDEDAIEDEDECENEEKDKDENEE 211

[Close]

BLAST of CmaCh04G028070 vs. TAIR 10
Match: AT3G02220.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2039 (InterPro:IPR019351); Has 215 Blast hits to 215 proteins in 94 species: Archae - 2; Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). )

HSP 1 Score: 214.2 bits (544), Expect = 1.0e-55
Identity = 132/223 (59.19%), Postives = 155/223 (69.51%), Query Frame = 0


Query: 1   MNSKHGAPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCLRCKDQIDWKRRYGKYK 60
           M S+ G PKHQNK+AW P AG KINETEVGGRFRPLSEITGVC RC++QI WKR+YGKYK
Sbjct: 1   MGSRQGPPKHQNKFAWVPKAGVKINETEVGGRFRPLSEITGVCYRCREQIAWKRKYGKYK 60

Query: 61  PLSEPAKCQLCSKRAVRQAYHNLCPGCAKQQGVCAKCRCRVDQTIGRDISEVEAEQKMLQ 120
            L+E  KCQ C+KR VRQAYH LCPGCAK+Q VCAKC   VDQ +GRDI EVEAEQK+L 
Sbjct: 61  TLTEATKCQKCTKRNVRQAYHKLCPGCAKEQKVCAKCCQSVDQILGRDIYEVEAEQKLLD 120

Query: 121 EAIKNARERDKRTLLRAMEK-GKSKTSNKNKSADEESKTGDSIPSSTEEQAA-------- 180
           E IKNARERD+RTLLRAM K  K   S++  S  + SK GD  PS++ E+ A        
Sbjct: 121 ETIKNARERDRRTLLRAMNKDNKPNKSDEEASRSDSSKVGDVFPSTSLEEYANKSGRVSG 180

Query: 181 -LGRTEEDD---DNESTDGTDEDAYEDEDECENEEKDKDENEE 211
            +G     D   D+ S   +DED    +DE +  E D DENE+
Sbjct: 181 IIGHGSVPDHAHDDASGPESDEDDNVGDDEHDLRE-DSDENEQ 222

The following BLAST results are available for this feature:

BLAST of CmaCh04G028070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96MD7	9.6e-14	36.73	Uncharacterized protein C9orf85 OS=Homo sapiens OX=9606 GN=C9orf85 PE=1 SV=1	[more]
Q9CQ90	1.6e-13	37.78	Uncharacterized protein C9orf85 homolog OS=Mus musculus OX=10090 PE=2 SV=1	[more]
Q68FU5	2.1e-13	37.78	Uncharacterized protein C9orf85 homolog OS=Rattus norvegicus OX=10116 PE=1 SV=1	[more]

BLAST of CmaCh04G028070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JP90	1.4e-108	100.00	ribosome biogenesis protein BOP1 homolog isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1GR32	1.6e-104	97.63	glutamic acid-rich protein isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456...	[more]
A0A1S3CAL0	5.2e-87	83.73	uncharacterized protein LOC103498541 OS=Cucumis melo OX=3656 GN=LOC103498541 PE=...	[more]
A0A0A0KSJ8	2.2e-85	83.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G640570 PE=4 SV=1	[more]
A0A6J1BX54	1.8e-79	81.59	uncharacterized protein LOC111006305 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of CmaCh04G028070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990906.1	2.9e-108	100.00	ribosome biogenesis protein BOP1 homolog isoform X1 [Cucurbita maxima]	[more]
KAG6602535.1	1.3e-105	98.10	Eukaryotic translation initiation factor 3 subunit M, partial [Cucurbita argyros...	[more]
KAG7033212.1	1.3e-105	98.10	hypothetical protein SDJN02_07266 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023538167.1	1.5e-104	98.10	glutamic acid-rich protein [Cucurbita pepo subsp. pepo]	[more]
XP_022954477.1	3.3e-104	97.63	glutamic acid-rich protein isoform X1 [Cucurbita moschata]	[more]

BLAST of CmaCh04G028070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02220.1	1.0e-55	59.19	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2039...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..210
IPR019351	Protein of unknown function DUF2039	PFAM	PF10217	DUF2039	coord: 8..98 e-value: 4.4E-28 score: 97.4
IPR019351	Protein of unknown function DUF2039	PANTHER	PTHR22876	ZGC:101016	coord: 3..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G028070.1	CmaCh04G028070.1	mRNA