CmaCh04G028020 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G028020
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 18767257 .. 18768210 (-)
RNA-Seq ExpressionCmaCh04G028020
SyntenyCmaCh04G028020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAGTCTATCCCTCACTTCCCCCTTCAAAGTCTGCATCTTTAGTTAGTTCTACAGGTTTAGGTTCATTTGAAATTAATCTTTCGGAAATTTTCTTCTTCTCTTGTACAGTCCCAGCAACCCTTGTGTGTGAATTTAGATCGTTGCTGGCATTAGAACTGTATTAAAAACAACTATTTACTGTATATGAAGGTAAAGGTACAAGTAGCACCCTCGTTTTCAAGTTCCGTCCAGATAAACTGCAAGGACCATTAGGCCGTCATGAAACATCCAAGAAATATGACAGGTGTTGATGTGCACCACTGCAGAAACTTTCATTAGGCCATCTTGGAACATCCAGGTCCTGGAAGCTAGAAAGAAAAATGATAATATTTCTTATAATTTTATACCGTAACATCGCACAGAAAGCATATTTTCTGATCGTATAAGATGACAAACCCATGCCAAGAAATATGACAGGTGTTGATGTGCACCACCGGCAGAAAGTGGACTTCAAGTCATACCAACCCTAAGATTTTAGATTTCTTCTCTTCAACAGAATAATTGGCAACGATAGGAGACTTATATTCAATAATCATTCCATACGTATACATCACGAGTGGACTTCAAGTCATACCACTTTTAACTGATCAAATAAGTGACAAAGAATTACACTTTTCCCCATAACAAAAATCTCAGTTTCTGTAATTCTGTTCCTTCAAGCTAGTAATTTGGCAGATATAGCAGCTTATTTCACCAGATTCTATAATAAGATAGTGGAACGTTCAACTCCCCTCTTGAATATGATCGAATATCGATCAGAGCAACTGAGAGACATGGTAAGAGTTCGATTCTGGCCATACAAGGTCAGCTAAGAGAACATTTTCTACAAGCTCTTGAACGCATGCAAAATCTAAGGACAAGTGCTACATTACAAACACTTGCAGGAAATAGCAAGAAAACAATTACCTGA

mRNA sequence

ATGTGCAGTCTATCCCTCACTTCCCCCTTCAAAGTCTGCATCTTTAGTACAAGTAGCACCCTCGTTTTCAAGTTCCGTCCAGATAAACTGCAAGGACCATTAGGCCGTCATGAAACATCCAAGAAATATGACAGTGGAACGTTCAACTCCCCTCTTGAATATGATCGAATATCGATCAGAGCAACTGAGAGACATGGTAAGAGTTCGATTCTGGCCATACAAGGTCAGCTAAGAGAACATTTTCTACAAGCTCTTGAACGCATGCAAAATCTAAGGACAAGTGCTACATTACAAACACTTGCAGGAAATAGCAAGAAAACAATTACCTGA

Coding sequence (CDS)

ATGTGCAGTCTATCCCTCACTTCCCCCTTCAAAGTCTGCATCTTTAGTACAAGTAGCACCCTCGTTTTCAAGTTCCGTCCAGATAAACTGCAAGGACCATTAGGCCGTCATGAAACATCCAAGAAATATGACAGTGGAACGTTCAACTCCCCTCTTGAATATGATCGAATATCGATCAGAGCAACTGAGAGACATGGTAAGAGTTCGATTCTGGCCATACAAGGTCAGCTAAGAGAACATTTTCTACAAGCTCTTGAACGCATGCAAAATCTAAGGACAAGTGCTACATTACAAACACTTGCAGGAAATAGCAAGAAAACAATTACCTGA

Protein sequence

MCSLSLTSPFKVCIFSTSSTLVFKFRPDKLQGPLGRHETSKKYDSGTFNSPLEYDRISIRATERHGKSSILAIQGQLREHFLQALERMQNLRTSATLQTLAGNSKKTIT
Homology
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BLAST of CmaCh04G028020 vs. NCBI nr
Match: KAG7033207.1 (hypothetical protein SDJN02_07261, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.5 bits (275), Expect = 9.0e-21
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 51  PLEYDRISIRATERHGKSSILAIQGQLREHFLQALERMQNLRTSATLQTLAGNSKKTIT 110
           PLEYDRISIRATERHGKSSI+AIQGQLREHFLQALERMQ+LRTSATLQTLAGNSKKTIT
Sbjct: 8   PLEYDRISIRATERHGKSSIMAIQGQLREHFLQALERMQSLRTSATLQTLAGNSKKTIT 66

The following BLAST results are available for this feature:
BLAST of CmaCh04G028020 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G028020 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G028020 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033207.19.0e-2196.61hypothetical protein SDJN02_07261, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh04G028020 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G028020.1CmaCh04G028020.1mRNA