CmaCh04G026780 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G026780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 18164543 .. 18166794 (-)
RNA-Seq ExpressionCmaCh04G026780
SyntenyCmaCh04G026780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTGAACTTAGGTTTGAGAATTAGAACAATCAACAAGCATTTTACAGCTATGACTATGATAGTCTTGCATTGTTGAAAAGGTTCTTGGCATAACTTGTGGGAAACTCTAAGCTTTTCGTCTTTTCACTTTTTCGGGTTAAGTCAATAGTTAGTTACTTTACGAACCCTTTGACTTTTATGATTTTCTTTTTCTCAAAAAGGAAATTCAAACATTTACATAAAAGTATACGTTTCAACGAGTTGAATTAAACTTAAAGTTTGCAGATAAAGTTGCCAACCAGCAATGAAAGTGAAAACAGCAGATAATAAAGATGTTTTTATTTTTCTACCTCTGGGAACTTTATAGTTCGGTGGAATGGAAGATTCTTTGGTCTTTAGGGAGAGTGGTGGGCACCATGATTGAATGCTTAGAGGAAGAAATGTCCACATGCTTCCCACTTTCCATCACAACCTCACGTGATTTCATCCAAAGATCCCACATGAAAAAGAGAACATGCGTCAAAGAAGATGCTAGCCTCAAAGAGGATTCTGGCCTCAAATAGAGGTAGATGGTGAGACTTTATATCGATTGAAAAGGGGAACGAGTGCCAACGAGGGCGCTGGGACCCGAAGAGAACTAGATTGTGAGATCCCCACATTGATTGGAGAGGGGAACGAAGCAAATCTCTCCCCAGCAGCACGTTTTCAAACCCTTTAGGGAAAGCTTAAAAAGGAAAGAAAGAACGACAATATTTACTAACAGTGAGCTTGAACTGTTACAAAACTAAGGGTAAACTATTCTTGGCGCTACGACTTAAACCAGGACCAAACAAAATTGATTAGGTCGGTTTTCTTGGTTCTTTAGGTTTAAACTTGAATCCCAAAGAGGTACAGGAAAACAAGAAGAACAGTATGCATTTTCAGAGGTCACACCACAAATTACACATTAAGAAGAGAAAAAAAAAGGAGAAAACAGATATCTAAGACCATTAGCATTTCTATTCACTTCCAGAGAAAACCATTGAGAAAGGAACAAATGAGCACTGTGACAGTGTTCTAAGATCAATACAGAGAGAGATGGTGGAAATTACAGTGTTACCTAATAAGCAATACCTATAAGACAAGCTTGGAAATGTGATTCAACTTTGAAGACATATGGTGGTTTGTGCCTAATATAACCCAATATAGCAATTACAATCAGTTTCCTCAGCTGCAACAGTATGGAGCCTCTGCCCTCAGTTTCCATTTCAGCCTCGCCTCAACTTCATTGGACACACAACCTTTAACTAACTCCACATTACAGCCATCAAATTTCAAAATAGGTATCTGTTTATGTTCAACATTTACAAAGTCATTTCTTCGTTCTTGTTCTTTCATAATTTAGCCACTTTCTCTTCTGCAGTTACCTGGTAACAAGTATTTGTACTCCTGAGCATTGTTTAGAAGGAATGATGGGAGATGAACGGCAGAGTAAGACCGAGGGATCGGTCCCATCTTCCCAATTATGTCCCGAAACGTGTACTCTTCTGGAAGCATGTCGAATAGGTCTTCTCCTTTGCATATTTTGTCCTGAATTCTGATGGGGTTCAAGTAATGAGAAAATCTTACTCTATCATAATGGCTGTATGCTTTCATCTTGAATATGAACTCACTGATACGGCGAAAGCAAAAGCTACAATGCCACCCCGAATCTGATAAGATTTCGTCGGATTGGCGATAATGAGCATACCGTGTTTTACCATGTTTGTACTGATGGACAGAAGCTCTCCAGCTCTTGTCATCTGCATAAAACTCGAAGGAGTACAGGTAGTTCCTTAGTCGCAGATGGAGTATGGGCGGAGTATTGTCGCACCACCTCAAGAGGTTTATCGTGTGAGCGCTTGGGATCTCGTCGACGTCAGACATGATCAATAAGTCATCATTCTGTATCCCTGCAATCCTAAGAAGTTGATCCAAAGCCAATCTTTGATATGCCTCTTCAACAAATGGATTCTCTCCTTTCTTAAACCTTCCCCCTATCATCCCATAGGTCAACCGTGGCTCAATGAAGCTAAAGCGCTCCCTGTTGTTTGCAAAAGCCAACTGCTTTGGCAGACCGGTGAACGTAGAGTTCGACTCGAGAAGCACAAACTGACTCACATAAGGATACAGTTCGTTCCATCTAACGGTCAGGATATCAACTTCATTACTAAACAGAACGGCATCGAAGACTCGTCTCGGCGATTCACGCATTTCCCAACCATGAAGTTTGCAGAGAGACTCCATTGA

mRNA sequence

ATGAAATTGAACTTAGAAGGAATGATGGGAGATGAACGGCAGAGTAAGACCGAGGGATCGGTCCCATCTTCCCAATTATGTCCCGAAACAAGCTCTCCAGCTCTTGTCATCTGCATAAAACTCGAAGGAGTACAGATGGAGTATGGGCGGAGTATTGTCGCACCACCTCAAGAGGTTTATCGTGTGAGCGCTTGGGATCTCGTCGACAAGTTGATCCAAAGCCAATCTTTGATATGCCTCTTCAACAAATGGATTCTCTCCTTTCTTAAACCTTCCCCCTATCATCCCATAGGTCAACCGTGGCTCAATGAAGCTAAAGCGCTCCCTGTTGTTTGCAAAAGCCAACTGCTTTGGCAGACCGGTGAACGTAGAGTTCGACTCGAGAAGCACAAACTGACTCACATAAGGATACAGTTCGTTCCATCTAACGGTCAGGATATCAACTTCATTACTAAACAGAACGGCATCGAAGACTCGTCTCGGCGATTCACGCATTTCCCAACCATGAAGTTTGCAGAGAGACTCCATTGA

Coding sequence (CDS)

ATGAAATTGAACTTAGAAGGAATGATGGGAGATGAACGGCAGAGTAAGACCGAGGGATCGGTCCCATCTTCCCAATTATGTCCCGAAACAAGCTCTCCAGCTCTTGTCATCTGCATAAAACTCGAAGGAGTACAGATGGAGTATGGGCGGAGTATTGTCGCACCACCTCAAGAGGTTTATCGTGTGAGCGCTTGGGATCTCGTCGACAAGTTGATCCAAAGCCAATCTTTGATATGCCTCTTCAACAAATGGATTCTCTCCTTTCTTAAACCTTCCCCCTATCATCCCATAGGTCAACCGTGGCTCAATGAAGCTAAAGCGCTCCCTGTTGTTTGCAAAAGCCAACTGCTTTGGCAGACCGGTGAACGTAGAGTTCGACTCGAGAAGCACAAACTGACTCACATAAGGATACAGTTCGTTCCATCTAACGGTCAGGATATCAACTTCATTACTAAACAGAACGGCATCGAAGACTCGTCTCGGCGATTCACGCATTTCCCAACCATGAAGTTTGCAGAGAGACTCCATTGA

Protein sequence

MKLNLEGMMGDERQSKTEGSVPSSQLCPETSSPALVICIKLEGVQMEYGRSIVAPPQEVYRVSAWDLVDKLIQSQSLICLFNKWILSFLKPSPYHPIGQPWLNEAKALPVVCKSQLLWQTGERRVRLEKHKLTHIRIQFVPSNGQDINFITKQNGIEDSSRRFTHFPTMKFAERLH
Homology
[Close]
BLAST of CmaCh04G026780 vs. ExPASy TrEMBL
Match: A0A5A7RFP8 (Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_33716 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.1e-05
Identity = 37/123 (30.08%), Postives = 62/123 (50.41%), Query Frame = 0 

Query: 46  MEYGRSIVAPPQEVYRVSAWDLVD----------------KLIQSQSLICLFNKWILSFL 105
           M+ GR+ V PPQ++ RV A D V+                ++IQS  LI   +K + S  
Sbjct: 1   MQNGRNPVTPPQQINRVPARDFVNIRHYQQVIILNTCLFKQIIQSNPLISFLDKRVYSLF 60

Query: 106 KPSPYHPIGQPWLNEAKALPVVCKSQLLWQTGERRVRLEKHKLTHIRIQFVPSNGQDINF 153
           + +    IGQ  L+E K  P   + + L +  E R+ LE++K  +IR++  P+  +DI  
Sbjct: 61  ESARDLSIGQTGLDEIKLGPGCGEYRGLREARESRIGLEENKFGYIRVKLFPAYFEDIEL 120

[Close]
BLAST of CmaCh04G026780 vs. NCBI nr
Match: GER56012.1 (hypothetical protein STAS_33716 [Striga asiatica])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 37/123 (30.08%), Postives = 62/123 (50.41%), Query Frame = 0 

Query: 46  MEYGRSIVAPPQEVYRVSAWDLVD----------------KLIQSQSLICLFNKWILSFL 105
           M+ GR+ V PPQ++ RV A D V+                ++IQS  LI   +K + S  
Sbjct: 1   MQNGRNPVTPPQQINRVPARDFVNIRHYQQVIILNTCLFKQIIQSNPLISFLDKRVYSLF 60

Query: 106 KPSPYHPIGQPWLNEAKALPVVCKSQLLWQTGERRVRLEKHKLTHIRIQFVPSNGQDINF 153
           + +    IGQ  L+E K  P   + + L +  E R+ LE++K  +IR++  P+  +DI  
Sbjct: 61  ESARDLSIGQTGLDEIKLGPGCGEYRGLREARESRIGLEENKFGYIRVKLFPAYFEDIEL 120

The following BLAST results are available for this feature:
BLAST of CmaCh04G026780 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G026780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7RFP87.1e-0530.08Uncharacterized protein OS=Striga asiatica OX=4170 GN=STAS_33716 PE=4 SV=1[more]
BLAST of CmaCh04G026780 vs. NCBI nr
Match NameE-valueIdentityDescription
GER56012.11.5e-0430.08hypothetical protein STAS_33716 [Striga asiatica][more]
BLAST of CmaCh04G026780 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G026780.1CmaCh04G026780.1mRNA