CmaCh04G026700 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G026700
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Copine domain-containing protein
Location	Cma_Chr04: 18128333 .. 18128752 (-)
RNA-Seq Expression	CmaCh04G026700
Synteny	CmaCh04G026700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGACCTCGACACCACCGCGCCGCCCGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGACGAGGAGAAGAGAGGAGGAGGAGATTTGTAGGAAGGTCGAAGCGGTGGTTCAAAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAACTCAGAGTTCCTAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAAAGGCTCGATTTCGAAGGTTGTGAAGAGGTTTAGGGAAGGCGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTCCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCCAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

mRNA sequence

ATGCCGGACCTCGACACCACCGCGCCGCCCGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGACGAGGAGAAGAGAGGAGGAGGAGATTTGTAGGAAGGTCGAAGCGGTGGTTCAAAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAACTCAGAGTTCCTAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAAAGGCTCGATTTCGAAGGTTGTGAAGAGGTTTAGGGAAGGCGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTCCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCCAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

Coding sequence (CDS)

ATGCCGGACCTCGACACCACCGCGCCGCCCGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGACGAGGAGAAGAGAGGAGGAGGAGATTTGTAGGAAGGTCGAAGCGGTGGTTCAAAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAACTCAGAGTTCCTAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAAAGGCTCGATTTCGAAGGTTGTGAAGAGGTTTAGGGAAGGCGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTCCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCCAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

Protein sequence

MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRLKKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKCHKNHHSALPNFAPTYSLNL

Homology

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BLAST of CmaCh04G026700 vs. ExPASy TrEMBL
Match: A0A6J1JM01 (uncharacterized protein LOC111487096 OS=Cucurbita maxima OX=3661 GN=LOC111487096 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.2e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRL 60
           MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRL
Sbjct: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRL 60

Query: 61  KKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120
           KKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC
Sbjct: 61  KKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120

Query: 121 HKNHHSALPNFAPTYSLNL 140
           HKNHHSALPNFAPTYSLNL
Sbjct: 121 HKNHHSALPNFAPTYSLNL 139

[Close]

BLAST of CmaCh04G026700 vs. ExPASy TrEMBL
Match: A0A6J1E2Z5 (uncharacterized protein LOC111430312 OS=Cucurbita moschata OX=3662 GN=LOC111430312 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.8e-65
Identity = 134/140 (95.71%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGE-ERRRRFVGRSKRWFKIRRASIGRR 60
           MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGE  RRRRFVGRSKRWF+IRRASIGRR
Sbjct: 17  MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 76

Query: 61  LKKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120
           LKKLRVPSLRKLLRRKSRLVTAM+GSI+KVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK
Sbjct: 77  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 136

Query: 121 CHKNHHSALPNFAPTYSLNL 140
           CHKNHHSAL NFAPTYSLNL
Sbjct: 137 CHKNHHSALQNFAPTYSLNL 156

[Close]

BLAST of CmaCh04G026700 vs. ExPASy TrEMBL
Match: A0A0A0KSD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 7.7e-39
Identity = 104/152 (68.42%), Postives = 116/152 (76.32%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRR--GEERRRRFVGRSKRWFKIR------ 60
           M DL+ TA  GKFRYRRLRYSEEFEEAFGRSR   GE  R+R+  R + WF++R      
Sbjct: 1   MADLE-TASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRW-RRRRWWFRMRMRKGSS 60

Query: 61  RASIGRRLKKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQ 120
             SIGRRLKKLR+PSLRKLLRRK RLV AM+GSI+KVVKRFR+GEAYLGDLFAGNYLFLQ
Sbjct: 61  SLSIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQ 120

Query: 121 VNPSSIKCHKNHHS-------ALPNFAPTYSL 138
           VNPSS+KC KNHH         + NF  TYSL
Sbjct: 121 VNPSSMKCLKNHHHHQQQHGFDVRNFPQTYSL 150

[Close]

BLAST of CmaCh04G026700 vs. ExPASy TrEMBL
Match: A0A1S4E272 (uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 7.7e-39
Identity = 99/147 (67.35%), Postives = 112/147 (76.19%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIR------RA 60
           M DL+ TA  GKFRYRRLRYSEEFEEAFGRSR G    R+     + WF++R        
Sbjct: 1   MADLE-TASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRWRTRRWWFRMRMRKGSSSL 60

Query: 61  SIGRRLKKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVN 120
           SIGRRLKKLR+PSLRKL+RRK RLV AM+GSI+KV+KRFR+GEAYLGDLFAGNYLFLQVN
Sbjct: 61  SIGRRLKKLRIPSLRKLMRRKWRLVNAMRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQVN 120

Query: 121 PSSIKCHKNHHSA----LPNFAPTYSL 138
           PSS+KC KNHH      + NF  TYSL
Sbjct: 121 PSSMKCMKNHHQQHGFDVRNFTQTYSL 146

[Close]

BLAST of CmaCh04G026700 vs. ExPASy TrEMBL
Match: A0A6J1FMJ7 (uncharacterized protein LOC111445317 OS=Cucurbita moschata OX=3662 GN=LOC111445317 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.5e-37
Identity = 98/138 (71.01%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRL 60
           M DL+  A   KFRYRRLR+S+E E AF RSR GE+  RRF G     F++RRASIGRRL
Sbjct: 53  MADLE-IASAAKFRYRRLRHSDELESAFARSRLGEQ--RRFGG-----FRMRRASIGRRL 112

Query: 61  KKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120
           KKLR+PSLRKL  RKSRLV AM GSISKV+KRFR+GEAYLGDLFAGNYLFLQ+NPSSIKC
Sbjct: 113 KKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIKC 172

Query: 121 HKNHHS-ALPNFAPTYSL 138
             NHH   L NF PT+SL
Sbjct: 173 LANHHQYPLQNFPPTFSL 181

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BLAST of CmaCh04G026700 vs. NCBI nr
Match: XP_022990096.1 (uncharacterized protein LOC111487096 [Cucurbita maxima])

HSP 1 Score: 270.8 bits (691), Expect = 6.6e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRL 60
           MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRL
Sbjct: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRL 60

Query: 61  KKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120
           KKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC
Sbjct: 61  KKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120

Query: 121 HKNHHSALPNFAPTYSLNL 140
           HKNHHSALPNFAPTYSLNL
Sbjct: 121 HKNHHSALPNFAPTYSLNL 139

[Close]

BLAST of CmaCh04G026700 vs. NCBI nr
Match: XP_023551709.1 (uncharacterized protein LOC111809563 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.5 bits (659), Expect = 3.4e-65
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRASIGRRL 60
           MPDLDTTA PGKFRYRRLRYSEEFEEAFGRSR GEERRRRFVGRSKRWF+IRRASIGRRL
Sbjct: 1   MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGEERRRRFVGRSKRWFRIRRASIGRRL 60

Query: 61  KKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120
           KKLRVPSLRKLLRRKSRLVTAM+GSI+KVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC
Sbjct: 61  KKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKC 120

Query: 121 HKNHHSALPNFAPTYSLNL 140
           HKNHHSAL NFAPTYSLNL
Sbjct: 121 HKNHHSALQNFAPTYSLNL 139

[Close]

BLAST of CmaCh04G026700 vs. NCBI nr
Match: XP_022922294.1 (uncharacterized protein LOC111430312 [Cucurbita moschata] >KAG7033079.1 hypothetical protein SDJN02_07132, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257.7 bits (657), Expect = 5.8e-65
Identity = 134/140 (95.71%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGE-ERRRRFVGRSKRWFKIRRASIGRR 60
           MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGE  RRRRFVGRSKRWF+IRRASIGRR
Sbjct: 17  MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 76

Query: 61  LKKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120
           LKKLRVPSLRKLLRRKSRLVTAM+GSI+KVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK
Sbjct: 77  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 136

Query: 121 CHKNHHSALPNFAPTYSLNL 140
           CHKNHHSAL NFAPTYSLNL
Sbjct: 137 CHKNHHSALQNFAPTYSLNL 156

[Close]

BLAST of CmaCh04G026700 vs. NCBI nr
Match: XP_038889218.1 (uncharacterized protein LOC120079105 [Benincasa hispida])

HSP 1 Score: 188.3 bits (477), Expect = 4.3e-44
Identity = 106/139 (76.26%), Postives = 117/139 (84.17%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEERRRRFVGRSKRWFKIRRA-SIGRR 60
           M DL+ TAP  KFRYRRL YSEEFEEAFGR R GE    R + RSKRWF+IR+A SIGRR
Sbjct: 1   MADLE-TAPAAKFRYRRLSYSEEFEEAFGRYRGGE----RILKRSKRWFRIRKASSIGRR 60

Query: 61  LKKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120
           LKKLR+PSLRKLLRRKS+LV AM+GSISK++KRFR+GEAYLGDLFAGNYLFLQVNPSS+K
Sbjct: 61  LKKLRIPSLRKLLRRKSQLVNAMRGSISKILKRFRDGEAYLGDLFAGNYLFLQVNPSSMK 120

Query: 121 CHKNHHS-ALPNFAPTYSL 138
           C KNHH   L NF  TYSL
Sbjct: 121 CLKNHHRFPLQNFPQTYSL 134

[Close]

BLAST of CmaCh04G026700 vs. NCBI nr
Match: XP_011655383.1 (uncharacterized protein LOC105435522 [Cucumis sativus] >KGN51342.1 hypothetical protein Csa_009087 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 1.6e-38
Identity = 104/152 (68.42%), Postives = 116/152 (76.32%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRR--GEERRRRFVGRSKRWFKIR------ 60
           M DL+ TA  GKFRYRRLRYSEEFEEAFGRSR   GE  R+R+  R + WF++R      
Sbjct: 1   MADLE-TASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRW-RRRRWWFRMRMRKGSS 60

Query: 61  RASIGRRLKKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQ 120
             SIGRRLKKLR+PSLRKLLRRK RLV AM+GSI+KVVKRFR+GEAYLGDLFAGNYLFLQ
Sbjct: 61  SLSIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQ 120

Query: 121 VNPSSIKCHKNHHS-------ALPNFAPTYSL 138
           VNPSS+KC KNHH         + NF  TYSL
Sbjct: 121 VNPSSMKCLKNHHHHQQQHGFDVRNFPQTYSL 150

[Close]

BLAST of CmaCh04G026700 vs. TAIR 10
Match: AT5G14410.1 (unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-08
Identity = 36/86 (41.86%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 34  GEERRRRFVGRSKRWFKIRRASIGRRLK-KLRVPSLRKLLRRKSRLVTAMKGSISKVVKR 93
           GE  RRR    S R+ ++      RR++ ++++  LR  +R+K+  V   K  I K++KR
Sbjct: 23  GETTRRRSSFYSYRFKRVVSLGGRRRIRVRVKIRRLRGFVRKKANRV---KTGILKILKR 82

Query: 94  FREGEAYLGDLFAGNYLFLQVNPSSI 119
            +E +++ GDLFAGNYLF+QVNPSS+
Sbjct: 83  LKESQSHFGDLFAGNYLFMQVNPSSL 105

The following BLAST results are available for this feature:

BLAST of CmaCh04G026700 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G026700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JM01	3.2e-69	100.00	uncharacterized protein LOC111487096 OS=Cucurbita maxima OX=3661 GN=LOC111487096...	[more]
A0A6J1E2Z5	2.8e-65	95.71	uncharacterized protein LOC111430312 OS=Cucurbita moschata OX=3662 GN=LOC1114303...	[more]
A0A0A0KSD1	7.7e-39	68.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1	[more]
A0A1S4E272	7.7e-39	67.35	uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=...	[more]
A0A6J1FMJ7	1.5e-37	71.01	uncharacterized protein LOC111445317 OS=Cucurbita moschata OX=3662 GN=LOC1114453...	[more]

BLAST of CmaCh04G026700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990096.1	6.6e-69	100.00	uncharacterized protein LOC111487096 [Cucurbita maxima]	[more]
XP_023551709.1	3.4e-65	95.68	uncharacterized protein LOC111809563 [Cucurbita pepo subsp. pepo]	[more]
XP_022922294.1	5.8e-65	95.71	uncharacterized protein LOC111430312 [Cucurbita moschata] >KAG7033079.1 hypothet...	[more]
XP_038889218.1	4.3e-44	76.26	uncharacterized protein LOC120079105 [Benincasa hispida]	[more]
XP_011655383.1	1.6e-38	68.42	uncharacterized protein LOC105435522 [Cucumis sativus] >KGN51342.1 hypothetical ...	[more]

BLAST of CmaCh04G026700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14410.1	3.1e-08	41.86	unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36795	OS01G0938400 PROTEIN	coord: 8..125
None	No IPR available	PANTHER	PTHR36795:SF2	OS01G0938400 PROTEIN	coord: 8..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G026700.1	CmaCh04G026700.1	mRNA