CmaCh04G026230 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G026230
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	photosynthetic NDH subunit of lumenal location 1, chloroplastic
Location	Cma_Chr04: 17905710 .. 17908215 (-)
RNA-Seq Expression	CmaCh04G026230
Synteny	CmaCh04G026230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTCGGGAAGGGAGAAAGAAACAACAGAAGAAGAAGAGTCGTCAAGATGACCACAGAAACCCAACCCGATCGGATAGCATTCTAAGTTTCCATTTTTTTACAGAGCTTGTTTGGATCAGATATGGCAGTTTCAACGTCATGCTTGAGTTGGGTTCCGACGTCCGCATCTAATTGGAAGGTTAGTAATTTGATTGACTGATCTTACACAACCCAATTCTTGTATCTCATTGTGCTTTAATTCCAGCCGAGGTTGCTTCCTTTCAATGAGCCATCAACAGCTACTTGTTCGTATTCTTCCTGTACTACCGTCATTTGCTCAACTGAGAGAACTTCCCGTGTGGAAAGTAAGACTTGTAGTTTTAAGTTCTTCGGTTGATTCCAATGCTTAAGGTTTTGGTTTTGCTTCTTATGCGATGAAAATGCTCGTTTGGTAATTAATCTGGTTGCTTATTGGTGGAAATTTGTTTCAAATTTAGAGAACTGTGGAATTATATGAGATTTGTAGCTTGCATGCAAGGTGTTTGTAGAAATGTCAAAAACAAAAGGGGCTTCGAAGATATAGGTTCAAACATGGTGACAACCTATCTAGGATTTAAAATGATATGAATTTACTTAGCAATCAAATGTAGTAGAGTTTGGTAGTTGTTTTTTGAGATTAACCAAGGTGTTCGCAAATTGGCCTAGACAGACATTGATGTTTGAAAAAGAAAAAATCGATGATAACTTCTATGTGACTTCTATGGTTTTTAATAGTGGGATTGTTCTCTCAATAAGTATTTTGATTAAGTTCTGCTTGGAATTTAGCAAAATTATGACTCACTTCTATGGTTTTTATAGTGGGAATGTTCTCCTAAAATGGATTTTGATTTGTTCTAATTGGAACTTTTCTTTTCTTTTCTTTCGCTGTTTTCTCAAGCCTAGATTTCCGTAATGACCGTAATACTGTGATGTTGAATATTAACATTAGGTCAATGCAATAGAAGGCCGCTTCTGTTGGGAGTTGGAGCTCTAGCAACAAGTTTATTTGCTGCACGTCCCCTATTTGCTGAAGGTATAAATTCACTTCTCTCTGATAATCTAATGTTGGATTCTAAATTAATTTCGTGGTCTGTATGCGCAGAAGTCCCGAAAAATTATCGAGCATTTGTAGATTCTACAGATGGGTATTCCTATTATTACCCTTCTGATTGGAGGGTAAGAAAAATTCAACCAGGAGAAACATGAGACTTTTCTGTATTAAACCAAAGAATATACTAAAACAAACAATTTTGAAATGTTCCCTGTCCAGGAATTTGATTTTAGAGCACATGATTCGGCATTCAAGGATCGATACCTGCAACTACAGAATGTTAGAGTGAAGTTCATACCAACAGAGAAAAAGGATATCCATGAAGAAGGTTCATTAGATGAGGTAAAGGAATCTTCAATTTAAATCATATTTGATATACTTGAAAGAGGTCTGAATAATTAACTCGACTCGACTCGAGCAGGTTGTTAACTTTTTGGTAAAACATCGATATGCTGCACCAAATCAAAAGGCTACCATATACGACATGAAGGAGGTTTGCATCTTTATCAGTCTCTCCAAATCCATATTTCGATATAGTATTATCTTGAGGTCTGTTTATGGACATCTGGTTGATCTTTTATTCACCTGTTTCAGCGAACGATTGATGGGAAAAATTATTATACCTTTGAGTATAAACTTAGTTCTAGAGCATACTCCCGCACCTCCTTTGCAACCATAGCCGTTGCAAATGGTAAGCTCATATTTTGTACCTTTAGAATTTTGGACCCTTCCATATTTTGATTTATCAGCTCCAAATCCCTTGCTTGTTGATCTAGGATACTTTTTTTACCCCCAAGAGATGTTTGGAAAAATTTCATTCGAACAGAATCGAAGTTAACCAAACTCATTTGATCAAGTTGTATTCTGCAATCTTAAACTAGTTCATAACTAACCAATATTTTGTGAATTGAATACTATTTGATTTGTGTTGAAGTCCCCGATCTTGAGCTGAATTAAACCTGTATTTATCCCTTGCACTTGTATATTCTGATGAGTTAATAGAAGCATTGCAAGTTTTTTAACTCCTTGAATTTAACAGGTGGGAGAATTCAAACCTCTAACTTCAAACTCTTTAGTCGATGATATATGTCTTTAACTTATTGCTATCCTCATGTTCGGTTTAAAACAACAACCCTTTTTGTAATATGCAGGTAGGTACTATACTTTGATAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTATCGTGACATGCTTAAAGTGGTTGCCGACTCATTCAGAGTGTTGGATATCTGAGCTGTTTCTAAAGGTTGTAAATCACTCGGTTTCTCTATTTTAAAAGTTCCCTTTTCATTTAATATGTAGCACTATTGGATATTGTTGTATATAGTTGGTATATAGCTATCTCCCTTGTAAGGTATATCTTTTCAGAGCTAAATTTACGATGAAACAAAATTAGAATGCATTAGATTTCAT

mRNA sequence

AAATTCGGGAAGGGAGAAAGAAACAACAGAAGAAGAAGAGTCGTCAAGATGACCACAGAAACCCAACCCGATCGGATAGCATTCTAAGTTTCCATTTTTTTACAGAGCTTGTTTGGATCAGATATGGCAGTTTCAACGTCATGCTTGAGTTGGGTTCCGACGTCCGCATCTAATTGGAAGCCGAGGTTGCTTCCTTTCAATGAGCCATCAACAGCTACTTGTTCGTATTCTTCCTGTACTACCGTCATTTGCTCAACTGAGAGAACTTCCCGTGTGGAAAGTCAATGCAATAGAAGGCCGCTTCTGTTGGGAGTTGGAGCTCTAGCAACAAGTTTATTTGCTGCACGTCCCCTATTTGCTGAAGAAGTCCCGAAAAATTATCGAGCATTTGTAGATTCTACAGATGGGTATTCCTATTATTACCCTTCTGATTGGAGGGAATTTGATTTTAGAGCACATGATTCGGCATTCAAGGATCGATACCTGCAACTACAGAATGTTAGAGTGAAGTTCATACCAACAGAGAAAAAGGATATCCATGAAGAAGGTTCATTAGATGAGGTTGTTAACTTTTTGGTAAAACATCGATATGCTGCACCAAATCAAAAGGCTACCATATACGACATGAAGGAGCGAACGATTGATGGGAAAAATTATTATACCTTTGAGTATAAACTTAGTTCTAGAGCATACTCCCGCACCTCCTTTGCAACCATAGCCGTTGCAAATGGTAGGTACTATACTTTGATAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTATCGTGACATGCTTAAAGTGGTTGCCGACTCATTCAGAGTGTTGGATATCTGAGCTGTTTCTAAAGGTTGTAAATCACTCGGTTTCTCTATTTTAAAAGTTCCCTTTTCATTTAATATGTAGCACTATTGGATATTGTTGTATATAGTTGGTATATAGCTATCTCCCTTGTAAGGTATATCTTTTCAGAGCTAAATTTACGATGAAACAAAATTAGAATGCATTAGATTTCAT

Coding sequence (CDS)

ATGGCAGTTTCAACGTCATGCTTGAGTTGGGTTCCGACGTCCGCATCTAATTGGAAGCCGAGGTTGCTTCCTTTCAATGAGCCATCAACAGCTACTTGTTCGTATTCTTCCTGTACTACCGTCATTTGCTCAACTGAGAGAACTTCCCGTGTGGAAAGTCAATGCAATAGAAGGCCGCTTCTGTTGGGAGTTGGAGCTCTAGCAACAAGTTTATTTGCTGCACGTCCCCTATTTGCTGAAGAAGTCCCGAAAAATTATCGAGCATTTGTAGATTCTACAGATGGGTATTCCTATTATTACCCTTCTGATTGGAGGGAATTTGATTTTAGAGCACATGATTCGGCATTCAAGGATCGATACCTGCAACTACAGAATGTTAGAGTGAAGTTCATACCAACAGAGAAAAAGGATATCCATGAAGAAGGTTCATTAGATGAGGTTGTTAACTTTTTGGTAAAACATCGATATGCTGCACCAAATCAAAAGGCTACCATATACGACATGAAGGAGCGAACGATTGATGGGAAAAATTATTATACCTTTGAGTATAAACTTAGTTCTAGAGCATACTCCCGCACCTCCTTTGCAACCATAGCCGTTGCAAATGGTAGGTACTATACTTTGATAGTTGGGGCAAATGACAGAAGGTGGAGAAGGTATCGTGACATGCTTAAAGTGGTTGCCGACTCATTCAGAGTGTTGGATATCTGA

Protein sequence

MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPLLLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYTFEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI

Homology

[Close]

BLAST of CmaCh04G026230 vs. ExPASy Swiss-Prot
Match: O80634 (Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL1 PE=1 SV=2)

HSP 1 Score: 263.8 bits (673), Expect = 1.8e-69
Identity = 143/237 (60.34%), Postives = 168/237 (70.89%), Query Frame = 0


Query: 2   AVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCN--RRP 61
           ++S  C  + PT +   K  +L  N PS   C   S      S+E T +  S  N  RR 
Sbjct: 5   SLSIRCGGFSPTISH--KTEILCPN-PSLKACCLLSSGGKADSSESTYQKGSGNNWKRRQ 64

Query: 62  LLLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDR 121
            L+GVG L  +   A  L AEE+PK+Y  FVD  DGYSYYYPSDWREFDFRAHDSAFKDR
Sbjct: 65  ALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDR 124

Query: 122 YLQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYY 181
           YLQLQNVRV+FIPTEK DIHE G ++EVV  LVKH++AAPNQ ATIYDMKER  DGKNYY
Sbjct: 125 YLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYY 184

Query: 182 TFEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 237
           TFEY L +  Y+ TSFAT+AV N RYYTLIVGAN+RRWR+ +  L+VVADS ++L I
Sbjct: 185 TFEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

[Close]

BLAST of CmaCh04G026230 vs. ExPASy Swiss-Prot
Match: P82538 (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPL1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.4e-34
Identity = 76/192 (39.58%), Postives = 110/192 (57.29%), Query Frame = 0


Query: 44  STERTSRVESQCNRRPLL-LGVGALATSLFAARPL-FAEEVPKNYRAFVDSTDGYSYYYP 103
           S+  +S ++ +C RR ++  GV A   SL +  PL FA E  K + A  D+ D Y++ YP
Sbjct: 37  SSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYP 96

Query: 104 SDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQ 163
             W+E      D  +KD    L++V V  +PT K+ I E G   ++   L+K   A PNQ
Sbjct: 97  FGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQ 156

Query: 164 KATIYDMKERTIDGKNYYTFEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYR 223
           K T+ D  E  +DGK YY FE+ + +R Y+R +  TI V NG +YTL  GAN+RRW + +
Sbjct: 157 KTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMK 216

Query: 224 DMLKVVADSFRV 234
           D L  V DSF++
Sbjct: 217 DRLHTVVDSFKI 228

[Close]

BLAST of CmaCh04G026230 vs. ExPASy Swiss-Prot
Match: P11594 (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba OX=3728 GN=PSBP PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 6.3e-06
Identity = 59/240 (24.58%), Postives = 97/240 (40.42%), Query Frame = 0


Query: 26  NEPSTATCSYSSCTTVICSTERTSRVE-SQCNRR---PLLLGVGALATSLFAARPLFAEE 85
           + PS+++  Y S + ++C  ++T   + S  +RR    LL+G  A+ + +  A   + E 
Sbjct: 20  SSPSSSSQRYVSISKLVCKAQQTHEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEA 79

Query: 86  V-----PKNYRAFVD-STDGYSYYYPSDW---REFDFRAHDSAFKDRYLQLQNVRVKFIP 145
                 PK    F   S DG+    P+ W   RE ++      ++D +    N+ V   P
Sbjct: 80  ANVFGKPKKNTDFTAYSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTP 139

Query: 146 TEKKDIHEEGSLDEV---VNFLV-KHRYAAPNQK-----------ATIYDMKERTIDGKN 205
           T+KK I + GS +E    VN+L+ K  Y                 A I +   + + GK 
Sbjct: 140 TDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILETNIQDVGGKP 199

Query: 206 YY---TFEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRW-RRYRDMLKVVADSFRV 234
           YY               +    T  V  G+ Y     A D+RW +     ++  A SF V
Sbjct: 200 YYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSV 259

[Close]

BLAST of CmaCh04G026230 vs. ExPASy Swiss-Prot
Match: O23403 (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05
Identity = 51/220 (23.18%), Postives = 89/220 (40.45%), Query Frame = 0


Query: 42  ICSTERTSRVESQCNRRPLLLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYP 101
           +C+  R   +        L++    L T+ FA+ P+F        R ++D+ DGYS+ YP
Sbjct: 74  VCAVGRRKSMMMGLLMSGLIVSQANLPTA-FASTPVF--------REYIDTFDGYSFKYP 133

Query: 102 SDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKD---IHEEGSLDEVVNFLVKH---- 161
            +W +      D  F+D  +  +N+ V+F      +   + + GS +EV   +++     
Sbjct: 134 QNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTE 193

Query: 162 ----RYAAPNQKATIYDMKERTIDGKNYYTFEYKLSSRA-----------------YSRT 221
               R     Q   +        DGK YY  E  + S A                 ++R 
Sbjct: 194 FMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRR 253

Query: 222 SFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRV 234
             A + V N R Y++ +   ++ +      L+ V DSFRV
Sbjct: 254 YLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRV 284

[Close]

BLAST of CmaCh04G026230 vs. ExPASy Swiss-Prot
Match: Q42029 (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBP1 PE=1 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 4.1e-05
Identity = 57/232 (24.57%), Postives = 92/232 (39.66%), Query Frame = 0


Query: 34  SYSSCTTVICSTERTSRVE-SQCNRR---PLLLGVGALATSLFAARPLFAEEV-----PK 93
           S S    +IC  +++   + S  +RR    LL+G  A+ + +  A   + E       PK
Sbjct: 31  SLSKPVQIICKAQQSHEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPK 90

Query: 94  NYRAFVD-STDGYSYYYPSDW---REFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKDIHE 153
               F+  + DG+    P+ W   +E ++      F+D +    N+ V   PT+KK I +
Sbjct: 91  TNTDFLPYNGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITD 150

Query: 154 EGSLDEV---VNFLV-KHRYAAPNQK-----------ATIYDMKERTIDGKNYY---TFE 213
            GS +E    VN+L+ K  Y                 A I +   + + GK YY      
Sbjct: 151 YGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSVLT 210

Query: 214 YKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRW-RRYRDMLKVVADSFRV 234
                    +    T  V  G+ Y     A D+RW +  R  ++  A SF V
Sbjct: 211 RTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSV 262

[Close]

BLAST of CmaCh04G026230 vs. ExPASy TrEMBL
Match: A0A6J1JS28 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487305 PE=4 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.3e-131
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60
           MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60

Query: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CmaCh04G026230 vs. ExPASy TrEMBL
Match: A0A6J1JMZ7 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487305 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 1.2e-129
Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60
           MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60

Query: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLFAARPLFA EVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLFAARPLFA-EVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 235

[Close]

BLAST of CmaCh04G026230 vs. ExPASy TrEMBL
Match: A0A6J1GN93 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455996 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 1.2e-129
Identity = 232/236 (98.31%), Postives = 233/236 (98.73%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60
           MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTT+ICSTERTSRVES CNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTIICSTERTSRVESHCNRRPL 60

Query: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALA SLFAA PLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALAASLFAASPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CmaCh04G026230 vs. ExPASy TrEMBL
Match: A0A6J1GN22 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455996 PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.2e-127
Identity = 231/236 (97.88%), Postives = 232/236 (98.31%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60
           MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTT+ICSTERTSRVES CNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTIICSTERTSRVESHCNRRPL 60

Query: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALA SLFAA PLFA EVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALAASLFAASPLFA-EVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 235

[Close]

BLAST of CmaCh04G026230 vs. ExPASy TrEMBL
Match: A0A1S3CKZ3 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501649 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.5e-116
Identity = 210/236 (88.98%), Postives = 221/236 (93.64%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60
           MAVSTSCLSWVPT+ASNWK +LLPFNEP+TAT S+SS +T+ CS ERTSR E   NRRPL
Sbjct: 1   MAVSTSCLSWVPTTASNWKLKLLPFNEPTTATSSFSSSSTINCSIERTSRDEGIYNRRPL 60

Query: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSL  A PLFA+EVPKNYRAFVD TDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLLGASPLFAQEVPKNYRAFVDYTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEG LDEVVNFLVKHRYAAPNQK TIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGPLDEVVNFLVKHRYAAPNQKVTIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRA+SRT+FATIA+ANGRYYTL+VGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAFSRTAFATIAIANGRYYTLVVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CmaCh04G026230 vs. NCBI nr
Match: XP_022990449.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 478.8 bits (1231), Expect = 2.7e-131
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60
           MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60

Query: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CmaCh04G026230 vs. NCBI nr
Match: XP_023534746.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 476.5 bits (1225), Expect = 1.4e-130
Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60
           MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60

Query: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLFAA PLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLFAATPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CmaCh04G026230 vs. NCBI nr
Match: XP_022990451.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 472.2 bits (1214), Expect = 2.5e-129
Identity = 235/236 (99.58%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60
           MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60

Query: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLFAARPLFA EVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLFAARPLFA-EVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 235

[Close]

BLAST of CmaCh04G026230 vs. NCBI nr
Match: XP_022953447.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucurbita moschata] >KAG6602355.1 Photosynthetic NDH subunit of lumenal location 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033035.1 Photosynthetic NDH subunit of lumenal location 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 472.2 bits (1214), Expect = 2.5e-129
Identity = 232/236 (98.31%), Postives = 233/236 (98.73%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60
           MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTT+ICSTERTSRVES CNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTIICSTERTSRVESHCNRRPL 60

Query: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALA SLFAA PLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALAASLFAASPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 236

[Close]

BLAST of CmaCh04G026230 vs. NCBI nr
Match: XP_023534754.1 (photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 469.9 bits (1208), Expect = 1.3e-128
Identity = 234/236 (99.15%), Postives = 234/236 (99.15%), Query Frame = 0


Query: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60
           MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL
Sbjct: 1   MAVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCNRRPL 60

Query: 61  LLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120
           LLGVGALATSLFAA PLFA EVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY
Sbjct: 61  LLGVGALATSLFAATPLFA-EVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDRY 120

Query: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180
           LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT
Sbjct: 121 LQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYYT 180

Query: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 237
           FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI
Sbjct: 181 FEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 235

[Close]

BLAST of CmaCh04G026230 vs. TAIR 10
Match: AT2G39470.2 (PsbP-like protein 2 )

HSP 1 Score: 264.2 bits (674), Expect = 9.8e-71
Identity = 127/180 (70.56%), Postives = 145/180 (80.56%), Query Frame = 0


Query: 57  RRPLLLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAF 116
           RR  L+GVG L  +   A  L AEE+PK+Y  FVD  DGYSYYYPSDWREFDFRAHDSAF
Sbjct: 51  RRQALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAF 110

Query: 117 KDRYLQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGK 176
           KDRYLQLQNVRV+FIPTEK DIHE G ++EVV  LVKH++AAPNQ ATIYDMKER  DGK
Sbjct: 111 KDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGK 170

Query: 177 NYYTFEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 236
           NYYTFEY L +  Y+ TSFAT+AV N RYYTLIVGAN+RRWR+ +  L+VVADS ++L I
Sbjct: 171 NYYTFEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 230

[Close]

BLAST of CmaCh04G026230 vs. TAIR 10
Match: AT2G39470.1 (PsbP-like protein 2 )

HSP 1 Score: 263.8 bits (673), Expect = 1.3e-70
Identity = 143/237 (60.34%), Postives = 168/237 (70.89%), Query Frame = 0


Query: 2   AVSTSCLSWVPTSASNWKPRLLPFNEPSTATCSYSSCTTVICSTERTSRVESQCN--RRP 61
           ++S  C  + PT +   K  +L  N PS   C   S      S+E T +  S  N  RR 
Sbjct: 5   SLSIRCGGFSPTISH--KTEILCPN-PSLKACCLLSSGGKADSSESTYQKGSGNNWKRRQ 64

Query: 62  LLLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAFKDR 121
            L+GVG L  +   A  L AEE+PK+Y  FVD  DGYSYYYPSDWREFDFRAHDSAFKDR
Sbjct: 65  ALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDR 124

Query: 122 YLQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKERTIDGKNYY 181
           YLQLQNVRV+FIPTEK DIHE G ++EVV  LVKH++AAPNQ ATIYDMKER  DGKNYY
Sbjct: 125 YLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKERVEDGKNYY 184

Query: 182 TFEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRVLDI 237
           TFEY L +  Y+ TSFAT+AV N RYYTLIVGAN+RRWR+ +  L+VVADS ++L I
Sbjct: 185 TFEYGLRTPIYATTSFATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

[Close]

BLAST of CmaCh04G026230 vs. TAIR 10
Match: AT2G39470.3 (PsbP-like protein 2 )

HSP 1 Score: 175.6 bits (444), Expect = 4.6e-44
Identity = 84/114 (73.68%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 57  RRPLLLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYPSDWREFDFRAHDSAF 116
           RR  L+GVG L  +   A  L AEE+PK+Y  FVD  DGYSYYYPSDWREFDFRAHDSAF
Sbjct: 51  RRQALVGVGTLVATSIPATLLLAEEIPKSYSPFVDREDGYSYYYPSDWREFDFRAHDSAF 110

Query: 117 KDRYLQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQKATIYDMKE 171
           KDRYLQLQNVRV+FIPTEK DIHE G ++EVV  LVKH++AAPNQ ATIYDMKE
Sbjct: 111 KDRYLQLQNVRVRFIPTEKNDIHEVGPMEEVVYDLVKHKFAAPNQVATIYDMKE 164

[Close]

BLAST of CmaCh04G026230 vs. TAIR 10
Match: AT3G55330.1 (PsbP-like protein 1 )

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-35
Identity = 76/192 (39.58%), Postives = 110/192 (57.29%), Query Frame = 0


Query: 44  STERTSRVESQCNRRPLL-LGVGALATSLFAARPL-FAEEVPKNYRAFVDSTDGYSYYYP 103
           S+  +S ++ +C RR ++  GV A   SL +  PL FA E  K + A  D+ D Y++ YP
Sbjct: 37  SSSSSSHLQDKCQRRLIVTFGVVAPWISLLSRAPLSFAAESKKGFLAVSDNKDAYAFLYP 96

Query: 104 SDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKDIHEEGSLDEVVNFLVKHRYAAPNQ 163
             W+E      D  +KD    L++V V  +PT K+ I E G   ++   L+K   A PNQ
Sbjct: 97  FGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQ 156

Query: 164 KATIYDMKERTIDGKNYYTFEYKLSSRAYSRTSFATIAVANGRYYTLIVGANDRRWRRYR 223
           K T+ D  E  +DGK YY FE+ + +R Y+R +  TI V NG +YTL  GAN+RRW + +
Sbjct: 157 KTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMK 216

Query: 224 DMLKVVADSFRV 234
           D L  V DSF++
Sbjct: 217 DRLHTVVDSFKI 228

[Close]

BLAST of CmaCh04G026230 vs. TAIR 10
Match: AT4G15510.1 (Photosystem II reaction center PsbP family protein )

HSP 1 Score: 52.0 bits (123), Expect = 7.7e-07
Identity = 51/220 (23.18%), Postives = 89/220 (40.45%), Query Frame = 0


Query: 42  ICSTERTSRVESQCNRRPLLLGVGALATSLFAARPLFAEEVPKNYRAFVDSTDGYSYYYP 101
           +C+  R   +        L++    L T+ FA+ P+F        R ++D+ DGYS+ YP
Sbjct: 74  VCAVGRRKSMMMGLLMSGLIVSQANLPTA-FASTPVF--------REYIDTFDGYSFKYP 133

Query: 102 SDWREFDFRAHDSAFKDRYLQLQNVRVKFIPTEKKD---IHEEGSLDEVVNFLVKH---- 161
            +W +      D  F+D  +  +N+ V+F      +   + + GS +EV   +++     
Sbjct: 134 QNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTE 193

Query: 162 ----RYAAPNQKATIYDMKERTIDGKNYYTFEYKLSSRA-----------------YSRT 221
               R     Q   +        DGK YY  E  + S A                 ++R 
Sbjct: 194 FMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRR 253

Query: 222 SFATIAVANGRYYTLIVGANDRRWRRYRDMLKVVADSFRV 234
             A + V N R Y++ +   ++ +      L+ V DSFRV
Sbjct: 254 YLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRV 284

The following BLAST results are available for this feature:

BLAST of CmaCh04G026230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80634	1.8e-69	60.34	Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis t...	[more]
P82538	1.4e-34	39.58	PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPL1 PE=1 ...	[more]
P11594	6.3e-06	24.58	Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba OX=3728 GN=PSB...	[more]
O23403	1.1e-05	23.18	PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q42029	4.1e-05	24.57	Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]

BLAST of CmaCh04G026230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JS28	1.3e-131	100.00	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cu...	[more]
A0A6J1JMZ7	1.2e-129	99.58	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 OS=Cu...	[more]
A0A6J1GN93	1.2e-129	98.31	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cu...	[more]
A0A6J1GN22	1.2e-127	97.88	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 OS=Cu...	[more]
A0A1S3CKZ3	4.5e-116	88.98	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 OS=Cu...	[more]

BLAST of CmaCh04G026230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990449.1	2.7e-131	100.00	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucu...	[more]
XP_023534746.1	1.4e-130	99.58	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucu...	[more]
XP_022990451.1	2.5e-129	99.58	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Cucu...	[more]
XP_022953447.1	2.5e-129	98.31	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Cucu...	[more]
XP_023534754.1	1.3e-128	99.15	photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X2 [Cucu...	[more]

BLAST of CmaCh04G026230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39470.2	9.8e-71	70.56	PsbP-like protein 2	[more]
AT2G39470.1	1.3e-70	60.34	PsbP-like protein 2	[more]
AT2G39470.3	4.6e-44	73.68	PsbP-like protein 2	[more]
AT3G55330.1	1.0e-35	39.58	PsbP-like protein 1	[more]
AT4G15510.1	7.7e-07	23.18	Photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 73..233 e-value: 1.7E-37 score: 131.0
None	No IPR available	PANTHER	PTHR31407:SF10	PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 1, CHLOROPLASTIC	coord: 1..236
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 1..236
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 85..233 e-value: 4.7E-41 score: 140.5
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 87..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G026230.1	CmaCh04G026230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding