CmaCh04G026190 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G026190
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr04: 17877423 .. 17877683 (+)
RNA-Seq Expression	CmaCh04G026190
Synteny	CmaCh04G026190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCATGAATTAGATGATCAATGCAGTCTTGAAATTCCCAACACGTTAGATATTTGTAGTCCAATGAACATAGTTAAGGCTAAATCTGAATCAGTTTATGTAAGCAAACAGAGAGCACACGAGGCATTAGGGAGTAGATTAGAACTGGTTGGTAAAGAAGTTCTTCCAGTTGATAATTCTTGTCCTATAGCAATGCCTTTTGCGGCAGAAATGCCAGAAGCAGCTGAAAATCCTTGTTCAACTGATTTGATTACTTGA

mRNA sequence

ATGAAGCATGAATTAGATGATCAATGCAGTCTTGAAATTCCCAACACGTTAGATATTTGTAGTCCAATGAACATAGTTAAGGCTAAATCTGAATCAGTTTATGTAAGCAAACAGAGAGCACACGAGGCATTAGGGAGTAGATTAGAACTGGTTGGTAAAGAAGTTCTTCCAGTTGATAATTCTTGTCCTATAGCAATGCCTTTTGCGGCAGAAATGCCAGAAGCAGCTGAAAATCCTTGTTCAACTGATTTGATTACTTGA

Coding sequence (CDS)

ATGAAGCATGAATTAGATGATCAATGCAGTCTTGAAATTCCCAACACGTTAGATATTTGTAGTCCAATGAACATAGTTAAGGCTAAATCTGAATCAGTTTATGTAAGCAAACAGAGAGCACACGAGGCATTAGGGAGTAGATTAGAACTGGTTGGTAAAGAAGTTCTTCCAGTTGATAATTCTTGTCCTATAGCAATGCCTTTTGCGGCAGAAATGCCAGAAGCAGCTGAAAATCCTTGTTCAACTGATTTGATTACTTGA

Protein sequence

MKHELDDQCSLEIPNTLDICSPMNIVKAKSESVYVSKQRAHEALGSRLELVGKEVLPVDNSCPIAMPFAAEMPEAAENPCSTDLIT

Homology

[Close]

BLAST of CmaCh04G026190 vs. ExPASy TrEMBL
Match: A0A6J1BWB0 (uncharacterized protein LOC111006113 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006113 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.2e-20
Identity = 60/91 (65.93%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 1   MKHELDDQCSLEIPNTLDICSPMNIVKA---KSESVYVSKQRAHEALGSRLELVGKEVLP 60
           M  ELDDQC+LE+P   +ICSPMNIVKA   KSE VY SK+ A E LG RL L+ K+VLP
Sbjct: 394 MNGELDDQCNLELPKASNICSPMNIVKAKSFKSEPVYESKKEALEMLGGRLNLISKQVLP 453

Query: 61  -VDNSCPIAMPFAAEMPEAAENP-CSTDLIT 87
            VDNSCPIA+P  AEM EAA NP CST L T
Sbjct: 454 DVDNSCPIAVPVVAEMSEAARNPSCSTYLAT 484

[Close]

BLAST of CmaCh04G026190 vs. ExPASy TrEMBL
Match: A0A6J1BVF8 (uncharacterized protein LOC111006113 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111006113 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.2e-20
Identity = 60/91 (65.93%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 1   MKHELDDQCSLEIPNTLDICSPMNIVKA---KSESVYVSKQRAHEALGSRLELVGKEVLP 60
           M  ELDDQC+LE+P   +ICSPMNIVKA   KSE VY SK+ A E LG RL L+ K+VLP
Sbjct: 379 MNGELDDQCNLELPKASNICSPMNIVKAKSFKSEPVYESKKEALEMLGGRLNLISKQVLP 438

Query: 61  -VDNSCPIAMPFAAEMPEAAENP-CSTDLIT 87
            VDNSCPIA+P  AEM EAA NP CST L T
Sbjct: 439 DVDNSCPIAVPVVAEMSEAARNPSCSTYLAT 469

[Close]

BLAST of CmaCh04G026190 vs. ExPASy TrEMBL
Match: A0A6J1BVK8 (uncharacterized protein LOC111006113 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006113 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.2e-20
Identity = 60/91 (65.93%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 1   MKHELDDQCSLEIPNTLDICSPMNIVKA---KSESVYVSKQRAHEALGSRLELVGKEVLP 60
           M  ELDDQC+LE+P   +ICSPMNIVKA   KSE VY SK+ A E LG RL L+ K+VLP
Sbjct: 394 MNGELDDQCNLELPKASNICSPMNIVKAKSFKSEPVYESKKEALEMLGGRLNLISKQVLP 453

Query: 61  -VDNSCPIAMPFAAEMPEAAENP-CSTDLIT 87
            VDNSCPIA+P  AEM EAA NP CST L T
Sbjct: 454 DVDNSCPIAVPVVAEMSEAARNPSCSTYLAT 484

[Close]

BLAST of CmaCh04G026190 vs. ExPASy TrEMBL
Match: A0A6J1JYG4 (uncharacterized protein LOC111489020 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489020 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 52/80 (65.00%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 11  LEIPNTLDICSPMNIVKAK---SESVYVSKQRAHEALGSRLELVGKEVLP-VDNSCPIAM 70
           L+IPN  D+  PMN VKAK   SES Y SKQ A + LG RL+LV K+VLP VD+SCP  M
Sbjct: 382 LQIPNASDVYIPMNPVKAKSVNSESNYESKQEALKTLGGRLDLVAKQVLPEVDSSCPAPM 441

Query: 71  PFAAEMPEAAENPCSTDLIT 87
           PF AEM EAA N CSTDLIT
Sbjct: 442 PFVAEMTEAAGNSCSTDLIT 461

[Close]

BLAST of CmaCh04G026190 vs. ExPASy TrEMBL
Match: A0A6J1JUI7 (uncharacterized protein LOC111489020 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489020 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 52/80 (65.00%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 11  LEIPNTLDICSPMNIVKAK---SESVYVSKQRAHEALGSRLELVGKEVLP-VDNSCPIAM 70
           L+IPN  D+  PMN VKAK   SES Y SKQ A + LG RL+LV K+VLP VD+SCP  M
Sbjct: 382 LQIPNASDVYIPMNPVKAKSVNSESNYESKQEALKTLGGRLDLVAKQVLPEVDSSCPAPM 441

Query: 71  PFAAEMPEAAENPCSTDLIT 87
           PF AEM EAA N CSTDLIT
Sbjct: 442 PFVAEMTEAAGNSCSTDLIT 461

[Close]

BLAST of CmaCh04G026190 vs. NCBI nr
Match: XP_022133555.1 (uncharacterized protein LOC111006113 isoform X2 [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 4.6e-20
Identity = 60/91 (65.93%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 1   MKHELDDQCSLEIPNTLDICSPMNIVKA---KSESVYVSKQRAHEALGSRLELVGKEVLP 60
           M  ELDDQC+LE+P   +ICSPMNIVKA   KSE VY SK+ A E LG RL L+ K+VLP
Sbjct: 394 MNGELDDQCNLELPKASNICSPMNIVKAKSFKSEPVYESKKEALEMLGGRLNLISKQVLP 453

Query: 61  -VDNSCPIAMPFAAEMPEAAENP-CSTDLIT 87
            VDNSCPIA+P  AEM EAA NP CST L T
Sbjct: 454 DVDNSCPIAVPVVAEMSEAARNPSCSTYLAT 484

[Close]

BLAST of CmaCh04G026190 vs. NCBI nr
Match: XP_022133556.1 (uncharacterized protein LOC111006113 isoform X3 [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 4.6e-20
Identity = 60/91 (65.93%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 1   MKHELDDQCSLEIPNTLDICSPMNIVKA---KSESVYVSKQRAHEALGSRLELVGKEVLP 60
           M  ELDDQC+LE+P   +ICSPMNIVKA   KSE VY SK+ A E LG RL L+ K+VLP
Sbjct: 379 MNGELDDQCNLELPKASNICSPMNIVKAKSFKSEPVYESKKEALEMLGGRLNLISKQVLP 438

Query: 61  -VDNSCPIAMPFAAEMPEAAENP-CSTDLIT 87
            VDNSCPIA+P  AEM EAA NP CST L T
Sbjct: 439 DVDNSCPIAVPVVAEMSEAARNPSCSTYLAT 469

[Close]

BLAST of CmaCh04G026190 vs. NCBI nr
Match: XP_022133554.1 (uncharacterized protein LOC111006113 isoform X1 [Momordica charantia])

HSP 1 Score: 107.8 bits (268), Expect = 4.6e-20
Identity = 60/91 (65.93%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 1   MKHELDDQCSLEIPNTLDICSPMNIVKA---KSESVYVSKQRAHEALGSRLELVGKEVLP 60
           M  ELDDQC+LE+P   +ICSPMNIVKA   KSE VY SK+ A E LG RL L+ K+VLP
Sbjct: 394 MNGELDDQCNLELPKASNICSPMNIVKAKSFKSEPVYESKKEALEMLGGRLNLISKQVLP 453

Query: 61  -VDNSCPIAMPFAAEMPEAAENP-CSTDLIT 87
            VDNSCPIA+P  AEM EAA NP CST L T
Sbjct: 454 DVDNSCPIAVPVVAEMSEAARNPSCSTYLAT 484

[Close]

BLAST of CmaCh04G026190 vs. NCBI nr
Match: XP_023550091.1 (uncharacterized protein LOC111808389 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.6 bits (231), Expect = 9.0e-16
Identity = 54/80 (67.50%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 11  LEIPNTLDICSPMNIVKAK---SESVYVSKQRAHEALGSRLELVGKEVLP-VDNSCPIAM 70
           L+IPN  DI  PMN VKAK   SES Y SKQ A E LG RL+LV K+VLP VD+SCP  M
Sbjct: 382 LQIPNASDIYIPMNTVKAKSVNSESNYESKQVALETLGGRLDLVAKQVLPEVDSSCPAPM 441

Query: 71  PFAAEMPEAAENPCSTDLIT 87
           PF AEM EAA N CSTDLIT
Sbjct: 442 PFVAEMTEAAGNSCSTDLIT 461

[Close]

BLAST of CmaCh04G026190 vs. NCBI nr
Match: XP_023550092.1 (uncharacterized protein LOC111808389 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.6 bits (231), Expect = 9.0e-16
Identity = 54/80 (67.50%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 11  LEIPNTLDICSPMNIVKAK---SESVYVSKQRAHEALGSRLELVGKEVLP-VDNSCPIAM 70
           L+IPN  DI  PMN VKAK   SES Y SKQ A E LG RL+LV K+VLP VD+SCP  M
Sbjct: 382 LQIPNASDIYIPMNTVKAKSVNSESNYESKQVALETLGGRLDLVAKQVLPEVDSSCPAPM 441

Query: 71  PFAAEMPEAAENPCSTDLIT 87
           PF AEM EAA N CSTDLIT
Sbjct: 442 PFVAEMTEAAGNSCSTDLIT 461

The following BLAST results are available for this feature:

BLAST of CmaCh04G026190 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G026190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BWB0	2.2e-20	65.93	uncharacterized protein LOC111006113 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1BVF8	2.2e-20	65.93	uncharacterized protein LOC111006113 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1BVK8	2.2e-20	65.93	uncharacterized protein LOC111006113 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1JYG4	1.3e-15	65.00	uncharacterized protein LOC111489020 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1JUI7	1.3e-15	65.00	uncharacterized protein LOC111489020 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmaCh04G026190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133555.1	4.6e-20	65.93	uncharacterized protein LOC111006113 isoform X2 [Momordica charantia]	[more]
XP_022133556.1	4.6e-20	65.93	uncharacterized protein LOC111006113 isoform X3 [Momordica charantia]	[more]
XP_022133554.1	4.6e-20	65.93	uncharacterized protein LOC111006113 isoform X1 [Momordica charantia]	[more]
XP_023550091.1	9.0e-16	67.50	uncharacterized protein LOC111808389 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023550092.1	9.0e-16	67.50	uncharacterized protein LOC111808389 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh04G026190 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G026190.1	CmaCh04G026190.1	mRNA