CmaCh04G025780 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G025780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionTyrosine-specific transport protein
LocationCma_Chr04: 17687113 .. 17690384 (-)
RNA-Seq ExpressionCmaCh04G025780
SyntenyCmaCh04G025780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAATGCTGTATGGAGTTCTCCCCCCAGCAATGGCATGGGCAATGTGCAATAGGGATTCTGAGGACACCAACTCCAAGGCATTATTGAAAGAGCGGCGTGCACTGCTTGGGCTAGGTTTATTTGCATGTGGTATAATGGTGGAGCAAGTTCTTCACGATCACTCTGAAATTGCAGTCCTAGTAAGGTAAAAGCCTTTTCTTATCTGAATTGGTTTTATTTGTTTGTGTTCACTATTTCCCTTAATTTAATTGCATGCTTCTACTCAACACCTGAAAGCAAATTTCATGCCAAGATAAACGGGCTATATCATAGATTTAAAGCTATAAAAATTTGAACGAACTACATTACATTACGATCTTTGCATCTCTATTGTCTGAACGAAATGATTTTGTTTTTTTTCTTCGAGATCTTGATCTTCAGTGCCACCATAGACTCGTGCATTTGAAAGTTTATCTAAAAAATTCTAAACAGAAGAAAACTAGGAAAATACCATTACTTATCTGCAACAGTCTTCCTCTTCAACAAAAAAGTTTACAAATCTCATGCAGATTGCTGACTGAAATTGAGCAGCACTTGCTGAAAACTTGAAAGAAGATGAACAGTTTGATTTGCAGACAATCTTGATATATAAATTATAACACAATTGAAGCATCTGTGTTAAAAACAGCATACCCAATGAAGGAAAGCTGCGCAGAGCTTTCAAGAGGGAGACCAAAGAAGGCCTCAGGCCAAGGATCAGATAAAAAGGATAGAGAAGAGAAGAGAAAAGACAAGATGGTGGAGATGGGTGCCATTCTTTCTCCAAATGCTGTAAGTAATGAATTCTTTTTTTCACGTATTCTTTATACTTCATCAAAGAAGATGAGTTTATATAGAGCTCAAAAAGCACGAATCTCAATAAAATGTTTAGCCATTAGCTTACCTGTGGGGTCTTATGCCCTGACCCAGAAAGCAAAAGGAACAATATTATGTTTAGAAGGAGAAGATATGATGTAATGTAAAGAAATTATGTAGGCGTGCCATAGAATTCTAAGCGCAAGTGAAACAGAGTCATGGTTGCTTTCAGTTGATTTGAGATTTGTGATAAAAAGAAAGCAAAAGAAGAATCACAAGAACAGGATAGGCGAAAAGAAAATTGGTATGGGGACCAGTCATGTCCTAAAGTTTGGAATCCTTTAGTTCATTGTTGAGTGAAAGGCTTCATAAATATTCAAATCAAGGAGCTTATGGGGTGAATTGAAGAGATTGTTTGAACTCTACTTTCTTTTAATTTTTTATTTAACTCGTTAGAACAATTATGTAATAGTCCAAATTCACAGCTAGTAGATATTGTCCTCTTTGGACTTTTCCTTTCGAGCTTTCCTTTAAGGTTTTAAAACGCGTCTACTAGGGAGAAGTTTCCATACCCTTATAAAGAATGTTTCGTTCTCTTCTCCAATAAACGTGGGATCTCATAAATTGTATGATTAAGATGTAATTATCCTATTTCCTTTTTTGGAATATATTAAATTTATTCATTTCACTGTGCATAAAGATGAAAGACTAAGATTCCATTGAAAGGTATTGGAAAATCCATTCATCTTTGTGCCATATGAGGTGAGGATGTGGTGGAGGGAGAATCATTACGTCTCTCTCTCCTTGGTACATTCCAAAATGTATTCACTTTTCTTTTTTGATACATTCTAGTGCCAATCCACTTTTTCTCTTTCATTTTTTCAATTTTTTTTTTTGTTTTTTAATTAAATCTCCAAATTTTAGCTTTGGGCTTCTTTCATAGAACGGGCAATTGGAGAAGATTAGACATAGTCCTAGATTTGACTGGTAGTCAGTATACCTTTCTATAGGTTTCTAAGTACATGCCCAAATACTTATTACTTTTTGAGTTGTAATTGCTATCCTATTAAGTTCAGTCATTTATTGTTCGTAATCTACAAACCGACTACTAATAGCCAGAATTTCTTCGAATATGTCCTTGAAATCATTCCGGACGTGAGCAAAACTCAAATGGGTGAGTTTGTCAAGTTCTCTTTTACCTTGGAAAATTATACTGTTACCTCACGGAGAGTTAGTCGCACCCACAAATGATATAAATACACGTCTCTTTTTTCTAATCTATTTTATTACTATTTTATAACTCTTAGTTGTTGGGATTAACTTGTGGAATAGGCGATATATATTCTAGTTTGTGTTTTTACGTATTTTTCTCCCGACACAATATCGAACTTTGCCATGTCCGAGAAGTAGCTCTTTGCCTACCCTTTTCAACACATGTTTAAAAAAGAAAAACTATTTTTAGCCATTCCAATAGCAAAAGAAAGAACTAGGAGATTCATGAAAGTCTCAAGCATACATGGGAAATAAAAACTCAAAATGCAAATACTAGTGTTAACATCTGGTTCTTAAATCTCCAGGAGCTAATTAAAGGCAGCATTATGATCATCACACATTTGGGTTGCTTCTAAATGACCCAAGAGCCTTTACAGCACCTGCTCGCAAGATGAATTGGTGGTAGAAAGCTGCAATGGCTGCTCCTATGAAGGGTCCAACCCAAAATATCCACTGCAAACAAATACTCATACCAATTAGTTCCCAAAACTAAAATATTTGAGTCATCACGTTTCTGTTTTTGAAACGTTAGATCATTTTATATATTGCTATCGAATCAAGAAGTTTAGATAAATTGTTTAGTTCGACAACATGTGAGAATAGAGACTCGAAGTTCTAGTCTATTAGTCATAGTAGAAATAATATGTGGGAATTGAGTGACTCGAGTTTGTAGTCTATTAGTCAGAGTATAAACATGTGGGAGTGGAGGGACTCAAACTTCTAATCTATTAGTCAGAGTAGAATCAACATGTGGGAATGGAGGGACTCGAGCTTCTAATCTATTAGTCAAAGTATAAACAATATGTGAGAATGGAGGGACTCGAGCTTCTAGTCTATAAGTCAGAGTACATACCTTAACTAGTTAAGTTACGTTTAAATTAATATATGTTTAGGTAAAGTTCGACGGTGGATGAAAATAGAAACTAACATGATTATTCCAAGTGTTTTGATGGTTGAAAATAACAGCAGATCCCAAGCTCCTTGCTGGGTTGATTCCAGTGCCAGTGACTGGAATGGTGGCCAGGTGAACTATGAACACTGCAAATCCAATTGGGAGTGGCGCCAAAACCTTCAAGGACAAAAAAAGAAGATAAGGATTTGTATGCATGTGAAGCCAAGTAAAATAAAGTTCATAACTTTCATTTGACCAAAAAGATAACAG

mRNA sequence

ATGACAATGCTGTATGGAGTTCTCCCCCCAGCAATGGCATGGGCAATGTGCAATAGGGATTCTGAGGACACCAACTCCAAGGCATTATTGAAAGAGCGGCGTGCACTGCTTGGGCTAGGTTTATTTGCATGTGGTATAATGGTGGAGCAAGTTCTTCACGATCACTCTGAAATTGCAGTCCTAGTAAGCATACCCAATGAAGGAAAGCTGCGCAGAGCTTTCAAGAGGGAGACCAAAGAAGGCCTCAGGCCAAGGATCAGATAAAAAGGATAGAGAAGAGAAGAGAAAAGACAAGATGGTGGAGATGGGTGCCATTCTTTCTCCAAATGCTGAGCTAATTAAAGGCAGCATTATGATCATCACACATTTGGGTTGCTTCTAAATGACCCAAGAGCCTTTACAGCACCTGCTCGCAAGATGAATTGGTGGTAGAAAGCTGCAATGGCTGCTCCTATGAAGGGTCCAACCCAAAATATCCACTGCAAACAAATACTCATACCAATTAGTTCCCAAAACTAAAATATTTGAGTCATCACGTTTCTGTTTTTGAAACGTTAGATCATTTTATATATTGCTATCGAATCAAGAAGTTTAGATAAATTGTTTAGTTCGACAACATGTGAGAATAGAGACTCGAAGTTCTAGTCTATTAGTCATAGTAGAAATAATATGTGGGAATTGAGTGACTCGAGTTTGTAGTCTATTAGTCAGAGTATAAACATGTGGGAGTGGAGGGACTCAAACTTCTAATCTATTAGTCAGAGTAGAATCAACATGTGGGAATGGAGGGACTCGAGCTTCTAATCTATTAGTCAAAGTATAAACAATATGTGAGAATGGAGGGACTCGAGCTTCTAGTCTATAAGTCAGAGTACATACCTTAACTAGTTAAGTTACGTTTAAATTAATATATGTTTAGGTAAAGTTCGACGGTGGATGAAAATAGAAACTAACATGATTATTCCAAGTGTTTTGATGGTTGAAAATAACAGCAGATCCCAAGCTCCTTGCTGGGTTGATTCCAGTGCCAGTGACTGGAATGGTGGCCAGGTGAACTATGAACACTGCAAATCCAATTGGGAGTGGCGCCAAAACCTTCAAGGACAAAAAAAGAAGATAAGGATTTGTATGCATGTGAAGCCAAGTAAAATAAAGTTCATAACTTTCATTTGACCAAAAAGATAACAG

Coding sequence (CDS)

ATGACAATGCTGTATGGAGTTCTCCCCCCAGCAATGGCATGGGCAATGTGCAATAGGGATTCTGAGGACACCAACTCCAAGGCATTATTGAAAGAGCGGCGTGCACTGCTTGGGCTAGGTTTATTTGCATGTGGTATAATGGTGGAGCAAGTTCTTCACGATCACTCTGAAATTGCAGTCCTAGTAAGCATACCCAATGAAGGAAAGCTGCGCAGAGCTTTCAAGAGGGAGACCAAAGAAGGCCTCAGGCCAAGGATCAGATAA

Protein sequence

MTMLYGVLPPAMAWAMCNRDSEDTNSKALLKERRALLGLGLFACGIMVEQVLHDHSEIAVLVSIPNEGKLRRAFKRETKEGLRPRIR
Homology
[Close]
BLAST of CmaCh04G025780 vs. ExPASy TrEMBL
Match: A0A5D3BLJ0 (Tyrosine-specific transport protein 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00720 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.8e-16
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1   MTMLYGVLPPAMAWAMCNRDSEDTNSKALLKERRALLGLGLFACGIMVEQVLHD 55
           MTMLYGVLPPAMAWAM +R+SE+T SKA+L+ER ALLGLGLFACGI+VEQV+ D
Sbjct: 291 MTMLYGVLPPAMAWAMHSRESEETESKAILRERPALLGLGLFACGIVVEQVIQD 344

[Close]
BLAST of CmaCh04G025780 vs. ExPASy TrEMBL
Match: A0A5A7T4H8 (Tyrosine-specific transport protein 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00300 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.8e-16
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1   MTMLYGVLPPAMAWAMCNRDSEDTNSKALLKERRALLGLGLFACGIMVEQVLHD 55
           MTMLYGVLPPAMAWAM +R+SE+T SKA+L+ER ALLGLGLFACGI+VEQV+ D
Sbjct: 162 MTMLYGVLPPAMAWAMHSRESEETESKAILRERPALLGLGLFACGIVVEQVIQD 215

[Close]
BLAST of CmaCh04G025780 vs. ExPASy TrEMBL
Match: A0A1S4E201 (tyrosine-specific transport protein 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496418 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.8e-16
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1   MTMLYGVLPPAMAWAMCNRDSEDTNSKALLKERRALLGLGLFACGIMVEQVLHD 55
           MTMLYGVLPPAMAWAM +R+SE+T SKA+L+ER ALLGLGLFACGI+VEQV+ D
Sbjct: 446 MTMLYGVLPPAMAWAMHSRESEETESKAILRERPALLGLGLFACGIVVEQVIQD 499

[Close]
BLAST of CmaCh04G025780 vs. ExPASy TrEMBL
Match: A0A6J1JMN3 (uncharacterized protein LOC111487227 OS=Cucurbita maxima OX=3661 GN=LOC111487227 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 0 

Query: 1   MTMLYGVLPPAMAWAMCNRDSEDTNSKALLKERRALLGLGLFACGIMVEQVLHD 55
           MTMLYGVLPPAMAWAM +R+SEDT+ K LL+ER AL GLGLFACGIMVEQVL D
Sbjct: 442 MTMLYGVLPPAMAWAMHSRESEDTSFKTLLRERPALFGLGLFACGIMVEQVLQD 495

[Close]
BLAST of CmaCh04G025780 vs. ExPASy TrEMBL
Match: A0A6J1BVF1 (uncharacterized protein LOC111006064 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111006064 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 1   MTMLYGVLPPAMAWAMCNRDSEDTNSKALLKERRALLGLGLFACGIMVEQVLHD 55
           MT+LYGVLPPAMAWAM N   EDTNSKA+L ER ALLGLGLFACGIMVEQVL D
Sbjct: 470 MTLLYGVLPPAMAWAMHNGQPEDTNSKAILWERPALLGLGLFACGIMVEQVLQD 523

[Close]
BLAST of CmaCh04G025780 vs. NCBI nr
Match: KAG7033001.1 (Tyrosine-specific transport protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.4 bits (259), Expect = 5.1e-19
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 1   MTMLYGVLPPAMAWAMCNRDSEDTNSKALLKERRALLGLGLFACGIMVEQVLHD 55
           MTMLYGVLPPAMAW M NR+SEDTNSKALLKER ALLGLGLFACGIMVEQVLHD
Sbjct: 541 MTMLYGVLPPAMAWTMYNRESEDTNSKALLKERPALLGLGLFACGIMVEQVLHD 594

[Close]
BLAST of CmaCh04G025780 vs. NCBI nr
Match: XP_038886198.1 (tyrosine-specific transport protein 1-like [Benincasa hispida] >XP_038886199.1 tyrosine-specific transport protein 1-like [Benincasa hispida] >XP_038886200.1 tyrosine-specific transport protein 1-like [Benincasa hispida] >XP_038886201.1 tyrosine-specific transport protein 1-like [Benincasa hispida] >XP_038886202.1 tyrosine-specific transport protein 1-like [Benincasa hispida] >XP_038886204.1 tyrosine-specific transport protein 1-like [Benincasa hispida] >XP_038886205.1 tyrosine-specific transport protein 1-like [Benincasa hispida])

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-17
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = 0 

Query: 1   MTMLYGVLPPAMAWAMCNRDSEDTNSKALLKERRALLGLGLFACGIMVEQVLHD 55
           MTMLYGVLPPAMAWAM +R+SEDTNSKALL+ER ALLGLGLFACGIMVEQV+ D
Sbjct: 448 MTMLYGVLPPAMAWAMNSRESEDTNSKALLRERPALLGLGLFACGIMVEQVIQD 501

[Close]
BLAST of CmaCh04G025780 vs. NCBI nr
Match: KAA0036461.1 (tyrosine-specific transport protein 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1   MTMLYGVLPPAMAWAMCNRDSEDTNSKALLKERRALLGLGLFACGIMVEQVLHD 55
           MTMLYGVLPPAMAWAM +R+SE+T SKA+L+ER ALLGLGLFACGI+VEQV+ D
Sbjct: 162 MTMLYGVLPPAMAWAMHSRESEETESKAILRERPALLGLGLFACGIVVEQVIQD 215

[Close]
BLAST of CmaCh04G025780 vs. NCBI nr
Match: XP_016902005.1 (PREDICTED: tyrosine-specific transport protein 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1   MTMLYGVLPPAMAWAMCNRDSEDTNSKALLKERRALLGLGLFACGIMVEQVLHD 55
           MTMLYGVLPPAMAWAM +R+SE+T SKA+L+ER ALLGLGLFACGI+VEQV+ D
Sbjct: 446 MTMLYGVLPPAMAWAMHSRESEETESKAILRERPALLGLGLFACGIVVEQVIQD 499

[Close]
BLAST of CmaCh04G025780 vs. NCBI nr
Match: TYK00027.1 (tyrosine-specific transport protein 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-15
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1   MTMLYGVLPPAMAWAMCNRDSEDTNSKALLKERRALLGLGLFACGIMVEQVLHD 55
           MTMLYGVLPPAMAWAM +R+SE+T SKA+L+ER ALLGLGLFACGI+VEQV+ D
Sbjct: 291 MTMLYGVLPPAMAWAMHSRESEETESKAILRERPALLGLGLFACGIVVEQVIQD 344

The following BLAST results are available for this feature:
BLAST of CmaCh04G025780 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G025780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BLJ09.8e-1679.63Tyrosine-specific transport protein 1-like isoform X1 OS=Cucumis melo var. makuw... [more]
A0A5A7T4H89.8e-1679.63Tyrosine-specific transport protein 1-like isoform X1 OS=Cucumis melo var. makuw... [more]
A0A1S4E2019.8e-1679.63tyrosine-specific transport protein 1-like isoform X1 OS=Cucumis melo OX=3656 GN... [more]
A0A6J1JMN31.3e-1581.48uncharacterized protein LOC111487227 OS=Cucurbita maxima OX=3661 GN=LOC111487227... [more]
A0A6J1BVF11.3e-1583.33uncharacterized protein LOC111006064 isoform X2 OS=Momordica charantia OX=3673 G... [more]
BLAST of CmaCh04G025780 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033001.15.1e-1992.59Tyrosine-specific transport protein, partial [Cucurbita argyrosperma subsp. argy... [more]
XP_038886198.12.8e-1787.04tyrosine-specific transport protein 1-like [Benincasa hispida] >XP_038886199.1 t... [more]
KAA0036461.12.0e-1579.63tyrosine-specific transport protein 1-like isoform X1 [Cucumis melo var. makuwa][more]
XP_016902005.12.0e-1579.63PREDICTED: tyrosine-specific transport protein 1-like isoform X1 [Cucumis melo][more]
TYK00027.12.0e-1579.63tyrosine-specific transport protein 1-like isoform X1 [Cucumis melo var. makuwa][more]
BLAST of CmaCh04G025780 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32195:SF24TRYPTOPHAN/TYROSINE PERMEASEcoord: 1..57
NoneNo IPR availablePANTHERPTHR32195FAMILY NOT NAMEDcoord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G025780.1CmaCh04G025780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0003333 amino acid transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane