![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CmaCh04G024690 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCAAAATCAATTTTAATAAATTGACTAAAAATGAACGATAAATATCGTTAACTTCGAAATTTTAAAAACGTAACCTAACAATTGAACCTGAGGCAGGTTGAACGGCCTTACAGCACCGCCATGGGAAGTAGAAGGAAAGCTCTTCTCGAGCTCTCCCACTATTTGAACAGCCTCTCATGTCCAACGAAACGTTCCTCTTTCCACAATCCGGTAATCTCCTTGAACGCTTTCTTAGCTTCTCGATATTTTTCCTCTTCCTTCTCCAGAACCTCCGAAACGGAAAATGATCGACCGCCACGAACGGACAGAGAAGCGATGCTTCTTGAAAAGTTCAGGAACAGGAAACTCAAAGGCTCGTCGAATATCTCGAGAGAATCATTGAGTTCTAACTCTGCTGTGAAAGGGAGTGGGAACGGAGGTGAGAAGGTGATGACAGGTTTCAAGGAGTTGGGGCTTTATAATGAAGTGGCGGAGGCTGCGGAAGGGATGGGATTCTTTGTTCCTTCTGAGTTGCTTTGTGTAGGGATTCCAGCTCTTTTGGAAGGGAAGAATGTGGTATTGGGATCTCTTTATGGACCAGAAAGGGCTTTAACTTACTTGTTGCCTCTCATTCAGGTTCTTCTTCTTTTATCAATTTGAATCTAATTATCCTTTGGCACTTAATGAATTTATGATGGCGTTGAGTTCATAATATCATTCAAAAGTGTATTTGATGGAGATGTATGTTACTATTTGACAATTTCTTGATTAAAGTTTATCTTTGGGTTGATTTTTAGAAATTCCAATGTCGAAATTTGTCTAATGAAGTCTCAGAAGCAGCAGATTAGAAGTATAGGCTATTCTAATTTTAAATATGTTTTGGAACATGTGCATTTGAATTTTGTGTGCTTGAATATTAATTTGACTAATGAGGCTTCATATATGGAATATTAATATGATATAAGGAAGAAATTATATTGGAAATCCTGAACCTTTGTTCAGTTCAACGACATATAGATGGAAATTTGAACTTTCAACCGTTTCGCTTTTAATCAATGATATAATGTAATGAGATCCCATATCGGTTGGAGAGGAGAACGAAACATTTTTTATAAAAATGTGTAAACCTCTCCCTATCAGACGTATTTTAAAAACCTTGAGAGGAAACTCCAAAGAGAACAATATTTGTTAGCGATGGGCTTGGATTGTTACAAATGGTATCAGAGCCAGACATTGGGTAATGTGCCAGCGAGGAGGCTAAGCCCCTAATGGGGTGGACACGATGCGATGTGCCAGCAATGATGCTGGACCTCGAAGGGGGTGTATTGGTAGGTCCCCATATTGATTGGAGAAGAGAACGAGTGCCAGCGTGGACGCTATACCTAGAAGGTGGGTGGATTGTGAGACCCCACATAGATTGGGGAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTAAAAACCTTGAGGAGAAGCCCGAAAGGGAAAGTCCAAAAAAGACAATTTCTTCTAGCTGTGGGCTTGGGCTATTACATATAATATCTTAGCTAGTTAGACTATAAAATTAAGATCTATTGCAATTGCCTGTTAAATTTACACTAAACCCAAAAGCTTTAAGTTTAAGCTATGATAAATGTAGTCTTTTAATATGCTCGTAATTCTCATTCCCAGTTCTTGAATTGTGGAATTGGCTATCTTGCTTGGTCTATTCTTCTTCATTTTAAGAGTTTTTCACTCTCCTCACCGTGCCTTTTATTTGATCTGCATTTGGAATGTTTTAATATTCCAAATTCCATCTAGATTTGAATAAATGCTTGTTCACTTTCATGATCTTTTCCCTCATTGTTATGTCTACAATTGGCTCTTATTAGAATCTAAAAAGAGATGCAAAATCAAATGGTGTAAGGTCCAAGCATCCCCGAGCCTTCGTTATGTGCTCAACCACGGAGCTATCTGACGAGGTATCCAGACCTTCATGAATAAGATGTTAAGTCCAACTACAGTTTGGTTGACATAAGAATATCACCCTGCAGGTGTTTCAGATGGCGAAGTTCATCAGCAATTACAAGCAGTTGAAAACTGCAAAGGACAATGGTTTTGGAAAATTAGAACTTCAGAATGGTGCATCAGATGTCTCGATCGGCCTGTTAATCGGCACCCCTAATGAGGTCTCTGAACTCATTGAAGACGGGAGCATGGTTTCGGATGAAATCAAGTACTTGGTATGCAGTCAACTATTCATACTACATCTCTAAAAATAAATTTTATCTGAAGTTTTCGTGGACAGTAATTGAAAAAAATAAACTGTTCCTTGCTCTGTTTAAGCCGCAGATATCACATCTTCTAGGATTGACCCTTCTTATTTTTGATAATCTGCTATAATTTTCAGTTATTTCTGCTTAAAATAGGCGCTAGGTTGCTAATTTAGATACGAAACTATATCGATATCTGGGTTCATATTCTCAGGAAACCATCAAGATTGTGAATTTTTTATATTGTTCTTATGAAACAGGTATTGGATGAGTTGGACACAATGTTCGACCTAGGCTTTGGCCCCAACATTAAAAAGATTTTAACTTCAGTAAAACAATCTACATCAAGACACTGCAATCAAAAGTGTCAATCTGTTGTGGTCACCTCGACGTTGATTAAGGTTATTTGTTCTACTTTGCCTCATTACTAGATATAGAACTTTTGTGCATTGATCACACGGGTTGGTTCATGAAACTTTTTCTCCGAGTTAATAATTTGTCGTATAAATTATAGATGTTGCACAAACAACATTCGTCCCTTGTGGAGTCTCTTAAGCGAAGCGATGGAGGAGAGATTGCTGCTATGCTTCTTGAAATTGAGGAAGAAGAGGCGTTCCATCTTATGGAATCTCCAGATACTCTGAAATGTAAACTTGCGGATGCGGTCGAGTCACTTCGTGCGTCCACAAATAGAACTTAAAACTTGATATCGACTTGTTTTACGTGATTGCACGTTAACTTTGAAAGACTGAATACGAATGGGCTGTTGTTTTTGTGTTTTTGGTGATAAAATTATCATTTCATTGCAAGATTGATTACATTCCAGGGGTTTGAAAGATACAAGGCTGCATACAATGGCGAGCTCTTAGGGAGAGGACAGAAAAACAAATGAAAGGTAGATTCTGAGATGATATTTTGTCTGTGATTGTCAATGTTTCTCTTCACTTCCAGGTGAGTAGAGGAAACTGAGTTCTAGCAGGGGTTACGACGTTTCCATTGGAGTCGTATAATATGACGCCCGAGAAGTCCGGTAGTTGACACTTCCCACCCATGAGTATGTTCTTCTCCCATACAGTAGCTCGTTGCTCTCTGCTGAAGAACATCTCGTCGTTGTCATTCTCCGGCTCGGTGGCATTCACAACACAGGTATTCACTCGTTGCGTAGTCACTACTGTCGCTTCTTGGTTAAGCTCTATTACAGGATCCTCAAACTCATAGCCATAATCCAAGCAAGCATTCCAGCGACGACGCCATTTCCGAGCATGGGAAGCACACATAAACAATGCAAAAGCACACAAGAGAAGGCTCGCACCAGCCATGCCAACCTGAGCTGTGGCTTGTGAAGAATGCATCATCATTTGTAGTTGCCTTGCCATTTTGGGGAAATCTGAAAGCTTGTTTGCTCTGAAGAAACTTTGAAGGCAACAGGTATTTATACAACGTTGGGTAAGTGGGGCTGTTGGTTTTGGAGGTTTTGTTGACCTGATTTGTGGTTTGGTGATCATTTTCCACTTATCTCTGCTTCTGATTAACTTTGCATTAATTTATTAATCCAACAACTCTTGACAGAGTTATAATCTTGTTCATGA CCAAAATCAATTTTAATAAATTGACTAAAAATGAACGATAAATATCGTTAACTTCGAAATTTTAAAAACGTAACCTAACAATTGAACCTGAGGCAGGTTGAACGGCCTTACAGCACCGCCATGGGAAGTAGAAGGAAAGCTCTTCTCGAGCTCTCCCACTATTTGAACAGCCTCTCATGTCCAACGAAACGTTCCTCTTTCCACAATCCGGTAATCTCCTTGAACGCTTTCTTAGCTTCTCGATATTTTTCCTCTTCCTTCTCCAGAACCTCCGAAACGGAAAATGATCGACCGCCACGAACGGACAGAGAAGCGATGCTTCTTGAAAAGTTCAGGAACAGGAAACTCAAAGGCTCGTCGAATATCTCGAGAGAATCATTGAGTTCTAACTCTGCTGTGAAAGGGAGTGGGAACGGAGGTGAGAAGGTGATGACAGGTTTCAAGGAGTTGGGGCTTTATAATGAAGTGGCGGAGGCTGCGGAAGGGATGGGATTCTTTGTTCCTTCTGAGTTGCTTTGTGTAGGGATTCCAGCTCTTTTGGAAGGGAAGAATGTGGTATTGGGATCTCTTTATGGACCAGAAAGGGCTTTAACTTACTTGTTGCCTCTCATTCAGAATCTAAAAAGAGATGCAAAATCAAATGGTGTAAGGTCCAAGCATCCCCGAGCCTTCGTTATGTGCTCAACCACGGAGCTATCTGACGAGGTGTTTCAGATGGCGAAGTTCATCAGCAATTACAAGCAGTTGAAAACTGCAAAGGACAATGGTTTTGGAAAATTAGAACTTCAGAATGGTGCATCAGATGTCTCGATCGGCCTGTTAATCGGCACCCCTAATGAGGTCTCTGAACTCATTGAAGACGGGAGCATGGTTTCGGATGAAATCAAGTACTTGGTATTGGATGAGTTGGACACAATGTTCGACCTAGGCTTTGGCCCCAACATTAAAAAGATTTTAACTTCAGTAAAACAATCTACATCAAGACACTGCAATCAAAAGTGTCAATCTGTTGTGGTCACCTCGACGTTGATTAAGATGTTGCACAAACAACATTCGTCCCTTGTGGAGTCTCTTAAGCGAAGCGATGGAGGAGAGATTGCTGCTATGCTTCTTGAAATTGAGGAAGAAGAGGCGTTCCATCTTATGGAATCTCCAGATACTCTGAAATGTAAACTTGCGGATGCGGTCGAGTCACTTCGTGCGTCCACAAATAGAACTTAAAACTTGATATCGACTTGTTTTACGTGATTGCACGTTAACTTTGAAAGACTGAATACGAATGGGCTGTTGTTTTTGTGTTTTTGGTGATAAAATTATCATTTCATTGCAAGATTGATTACATTCCAGGGGTTTGAAAGATACAAGGCTGCATACAATGGCGAGCTCTTAGGGAGAGGACAGAAAAACAAATGAAAGGTAGATTCTGAGATGATATTTTGTCTGTGATTGTCAATGTTTCTCTTCACTTCCAGGTGAGTAGAGGAAACTGAGTTCTAGCAGGGGTTACGACGTTTCCATTGGAGTCGTATAATATGACGCCCGAGAAGTCCGGTAGTTGACACTTCCCACCCATGAGTATGTTCTTCTCCCATACAGTAGCTCGTTGCTCTCTGCTGAAGAACATCTCGTCGTTGTCATTCTCCGGCTCGGTGGCATTCACAACACAGGTATTCACTCGTTGCGTAGTCACTACTGTCGCTTCTTGGTTAAGCTCTATTACAGGATCCTCAAACTCATAGCCATAATCCAAGCAAGCATTCCAGCGACGACGCCATTTCCGAGCATGGGAAGCACACATAAACAATGCAAAAGCACACAAGAGAAGGCTCGCACCAGCCATGCCAACCTGAGCTGTGGCTTGTGAAGAATGCATCATCATTTGTAGTTGCCTTGCCATTTTGGGGAAATCTGAAAGCTTGTTTGCTCTGAAGAAACTTTGAAGGCAACAGGTATTTATACAACGTTGGGTAAGTGGGGCTGTTGGTTTTGGAGGTTTTGTTGACCTGATTTGTGGTTTGGTGATCATTTTCCACTTATCTCTGCTTCTGATTAACTTTGCATTAATTTATTAATCCAACAACTCTTGACAGAGTTATAATCTTGTTCATGA ATGGGAAGTAGAAGGAAAGCTCTTCTCGAGCTCTCCCACTATTTGAACAGCCTCTCATGTCCAACGAAACGTTCCTCTTTCCACAATCCGGTAATCTCCTTGAACGCTTTCTTAGCTTCTCGATATTTTTCCTCTTCCTTCTCCAGAACCTCCGAAACGGAAAATGATCGACCGCCACGAACGGACAGAGAAGCGATGCTTCTTGAAAAGTTCAGGAACAGGAAACTCAAAGGCTCGTCGAATATCTCGAGAGAATCATTGAGTTCTAACTCTGCTGTGAAAGGGAGTGGGAACGGAGGTGAGAAGGTGATGACAGGTTTCAAGGAGTTGGGGCTTTATAATGAAGTGGCGGAGGCTGCGGAAGGGATGGGATTCTTTGTTCCTTCTGAGTTGCTTTGTGTAGGGATTCCAGCTCTTTTGGAAGGGAAGAATGTGGTATTGGGATCTCTTTATGGACCAGAAAGGGCTTTAACTTACTTGTTGCCTCTCATTCAGAATCTAAAAAGAGATGCAAAATCAAATGGTGTAAGGTCCAAGCATCCCCGAGCCTTCGTTATGTGCTCAACCACGGAGCTATCTGACGAGGTGTTTCAGATGGCGAAGTTCATCAGCAATTACAAGCAGTTGAAAACTGCAAAGGACAATGGTTTTGGAAAATTAGAACTTCAGAATGGTGCATCAGATGTCTCGATCGGCCTGTTAATCGGCACCCCTAATGAGGTCTCTGAACTCATTGAAGACGGGAGCATGGTTTCGGATGAAATCAAGTACTTGGTATTGGATGAGTTGGACACAATGTTCGACCTAGGCTTTGGCCCCAACATTAAAAAGATTTTAACTTCAGTAAAACAATCTACATCAAGACACTGCAATCAAAAGTGTCAATCTGTTGTGGTCACCTCGACGTTGATTAAGATGTTGCACAAACAACATTCGTCCCTTGTGGAGTCTCTTAAGCGAAGCGATGGAGGAGAGATTGCTGCTATGCTTCTTGAAATTGAGGAAGAAGAGGCGTTCCATCTTATGGAATCTCCAGATACTCTGAAATGTAAACTTGCGGATGCGGTCGAGTCACTTCGTGCGTCCACAAATAGAACTTAA MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVTSTLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLRASTNRT Homology
BLAST of CmaCh04G024690 vs. ExPASy Swiss-Prot
Match: Q5VRY0 (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 6.3e-45 Identity = 105/276 (38.04%), Postives = 164/276 (59.42%), Query Frame = 0
BLAST of CmaCh04G024690 vs. ExPASy Swiss-Prot
Match: Q56X76 (DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 PE=2 SV=2) HSP 1 Score: 171.0 bits (432), Expect = 2.5e-41 Identity = 102/271 (37.64%), Postives = 168/271 (61.99%), Query Frame = 0
BLAST of CmaCh04G024690 vs. ExPASy Swiss-Prot
Match: P42305 (ATP-dependent RNA helicase DbpA OS=Bacillus subtilis (strain 168) OX=224308 GN=dbpA PE=1 SV=2) HSP 1 Score: 89.0 bits (219), Expect = 1.2e-16 Identity = 68/271 (25.09%), Postives = 131/271 (48.34%), Query Frame = 0
BLAST of CmaCh04G024690 vs. ExPASy Swiss-Prot
Match: Q12S35 (ATP-dependent RNA helicase RhlB OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=rhlB PE=3 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 3.0e-15 Identity = 49/182 (26.92%), Postives = 89/182 (48.90%), Query Frame = 0
BLAST of CmaCh04G024690 vs. ExPASy Swiss-Prot
Match: A5UDI1 (ATP-dependent RNA helicase RhlB OS=Haemophilus influenzae (strain PittEE) OX=374930 GN=rhlB PE=3 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 4.0e-15 Identity = 53/173 (30.64%), Postives = 89/173 (51.45%), Query Frame = 0
BLAST of CmaCh04G024690 vs. ExPASy TrEMBL
Match: A0A6J1JT03 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita maxima OX=3661 GN=LOC111487576 PE=4 SV=1) HSP 1 Score: 701.8 bits (1810), Expect = 1.5e-198 Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0
BLAST of CmaCh04G024690 vs. ExPASy TrEMBL
Match: A0A6J1H541 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita moschata OX=3662 GN=LOC111460659 PE=4 SV=1) HSP 1 Score: 671.0 bits (1730), Expect = 2.8e-189 Identity = 350/366 (95.63%), Postives = 356/366 (97.27%), Query Frame = 0
BLAST of CmaCh04G024690 vs. ExPASy TrEMBL
Match: A0A6J1BZL0 (DEAD-box ATP-dependent RNA helicase 39-like OS=Momordica charantia OX=3673 GN=LOC111006682 PE=4 SV=1) HSP 1 Score: 515.4 bits (1326), Expect = 2.0e-142 Identity = 277/370 (74.86%), Postives = 305/370 (82.43%), Query Frame = 0
BLAST of CmaCh04G024690 vs. ExPASy TrEMBL
Match: A0A5A7SLY8 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G003970 PE=4 SV=1) HSP 1 Score: 472.2 bits (1214), Expect = 1.9e-129 Identity = 259/370 (70.00%), Postives = 294/370 (79.46%), Query Frame = 0
BLAST of CmaCh04G024690 vs. ExPASy TrEMBL
Match: A0A1S3C4L0 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo OX=3656 GN=LOC103496581 PE=4 SV=1) HSP 1 Score: 472.2 bits (1214), Expect = 1.9e-129 Identity = 259/370 (70.00%), Postives = 294/370 (79.46%), Query Frame = 0
BLAST of CmaCh04G024690 vs. NCBI nr
Match: XP_022990794.1 (DEAD-box ATP-dependent RNA helicase 39-like [Cucurbita maxima]) HSP 1 Score: 701.8 bits (1810), Expect = 3.1e-198 Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0
BLAST of CmaCh04G024690 vs. NCBI nr
Match: XP_022959642.1 (DEAD-box ATP-dependent RNA helicase 39-like [Cucurbita moschata]) HSP 1 Score: 671.0 bits (1730), Expect = 5.8e-189 Identity = 350/366 (95.63%), Postives = 356/366 (97.27%), Query Frame = 0
BLAST of CmaCh04G024690 vs. NCBI nr
Match: KAG6602207.1 (DEAD-box ATP-dependent RNA helicase 39, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 663.7 bits (1711), Expect = 9.2e-187 Identity = 346/366 (94.54%), Postives = 354/366 (96.72%), Query Frame = 0
BLAST of CmaCh04G024690 vs. NCBI nr
Match: XP_023512464.1 (DEAD-box ATP-dependent RNA helicase 39-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023512472.1 DEAD-box ATP-dependent RNA helicase 39-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 611.7 bits (1576), Expect = 4.2e-171 Identity = 324/356 (91.01%), Postives = 331/356 (92.98%), Query Frame = 0
BLAST of CmaCh04G024690 vs. NCBI nr
Match: KAG7032889.1 (DEAD-box ATP-dependent RNA helicase 39 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 544.3 bits (1401), Expect = 8.2e-151 Identity = 296/366 (80.87%), Postives = 305/366 (83.33%), Query Frame = 0
BLAST of CmaCh04G024690 vs. TAIR 10
Match: AT4G09730.1 (RH39 ) HSP 1 Score: 171.0 bits (432), Expect = 1.8e-42 Identity = 102/271 (37.64%), Postives = 168/271 (61.99%), Query Frame = 0
BLAST of CmaCh04G024690 vs. TAIR 10
Match: AT1G12770.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein ) HSP 1 Score: 79.7 bits (195), Expect = 5.3e-15 Identity = 43/184 (23.37%), Postives = 94/184 (51.09%), Query Frame = 0
BLAST of CmaCh04G024690 vs. TAIR 10
Match: AT2G42520.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein ) HSP 1 Score: 77.8 bits (190), Expect = 2.0e-14 Identity = 48/190 (25.26%), Postives = 91/190 (47.89%), Query Frame = 0
BLAST of CmaCh04G024690 vs. TAIR 10
Match: AT3G58570.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein ) HSP 1 Score: 75.1 bits (183), Expect = 1.3e-13 Identity = 46/190 (24.21%), Postives = 91/190 (47.89%), Query Frame = 0
BLAST of CmaCh04G024690 vs. TAIR 10
Match: AT2G47330.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein ) HSP 1 Score: 74.7 bits (182), Expect = 1.7e-13 Identity = 44/191 (23.04%), Postives = 92/191 (48.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|