CmaCh04G024690 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G024690
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DEAD-box ATP-dependent RNA helicase 39-like
Location	Cma_Chr04: 16969013 .. 16972856 (-)
RNA-Seq Expression	CmaCh04G024690
Synteny	CmaCh04G024690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAATCAATTTTAATAAATTGACTAAAAATGAACGATAAATATCGTTAACTTCGAAATTTTAAAAACGTAACCTAACAATTGAACCTGAGGCAGGTTGAACGGCCTTACAGCACCGCCATGGGAAGTAGAAGGAAAGCTCTTCTCGAGCTCTCCCACTATTTGAACAGCCTCTCATGTCCAACGAAACGTTCCTCTTTCCACAATCCGGTAATCTCCTTGAACGCTTTCTTAGCTTCTCGATATTTTTCCTCTTCCTTCTCCAGAACCTCCGAAACGGAAAATGATCGACCGCCACGAACGGACAGAGAAGCGATGCTTCTTGAAAAGTTCAGGAACAGGAAACTCAAAGGCTCGTCGAATATCTCGAGAGAATCATTGAGTTCTAACTCTGCTGTGAAAGGGAGTGGGAACGGAGGTGAGAAGGTGATGACAGGTTTCAAGGAGTTGGGGCTTTATAATGAAGTGGCGGAGGCTGCGGAAGGGATGGGATTCTTTGTTCCTTCTGAGTTGCTTTGTGTAGGGATTCCAGCTCTTTTGGAAGGGAAGAATGTGGTATTGGGATCTCTTTATGGACCAGAAAGGGCTTTAACTTACTTGTTGCCTCTCATTCAGGTTCTTCTTCTTTTATCAATTTGAATCTAATTATCCTTTGGCACTTAATGAATTTATGATGGCGTTGAGTTCATAATATCATTCAAAAGTGTATTTGATGGAGATGTATGTTACTATTTGACAATTTCTTGATTAAAGTTTATCTTTGGGTTGATTTTTAGAAATTCCAATGTCGAAATTTGTCTAATGAAGTCTCAGAAGCAGCAGATTAGAAGTATAGGCTATTCTAATTTTAAATATGTTTTGGAACATGTGCATTTGAATTTTGTGTGCTTGAATATTAATTTGACTAATGAGGCTTCATATATGGAATATTAATATGATATAAGGAAGAAATTATATTGGAAATCCTGAACCTTTGTTCAGTTCAACGACATATAGATGGAAATTTGAACTTTCAACCGTTTCGCTTTTAATCAATGATATAATGTAATGAGATCCCATATCGGTTGGAGAGGAGAACGAAACATTTTTTATAAAAATGTGTAAACCTCTCCCTATCAGACGTATTTTAAAAACCTTGAGAGGAAACTCCAAAGAGAACAATATTTGTTAGCGATGGGCTTGGATTGTTACAAATGGTATCAGAGCCAGACATTGGGTAATGTGCCAGCGAGGAGGCTAAGCCCCTAATGGGGTGGACACGATGCGATGTGCCAGCAATGATGCTGGACCTCGAAGGGGGTGTATTGGTAGGTCCCCATATTGATTGGAGAAGAGAACGAGTGCCAGCGTGGACGCTATACCTAGAAGGTGGGTGGATTGTGAGACCCCACATAGATTGGGGAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACACGTTTTAAAAACCTTGAGGAGAAGCCCGAAAGGGAAAGTCCAAAAAAGACAATTTCTTCTAGCTGTGGGCTTGGGCTATTACATATAATATCTTAGCTAGTTAGACTATAAAATTAAGATCTATTGCAATTGCCTGTTAAATTTACACTAAACCCAAAAGCTTTAAGTTTAAGCTATGATAAATGTAGTCTTTTAATATGCTCGTAATTCTCATTCCCAGTTCTTGAATTGTGGAATTGGCTATCTTGCTTGGTCTATTCTTCTTCATTTTAAGAGTTTTTCACTCTCCTCACCGTGCCTTTTATTTGATCTGCATTTGGAATGTTTTAATATTCCAAATTCCATCTAGATTTGAATAAATGCTTGTTCACTTTCATGATCTTTTCCCTCATTGTTATGTCTACAATTGGCTCTTATTAGAATCTAAAAAGAGATGCAAAATCAAATGGTGTAAGGTCCAAGCATCCCCGAGCCTTCGTTATGTGCTCAACCACGGAGCTATCTGACGAGGTATCCAGACCTTCATGAATAAGATGTTAAGTCCAACTACAGTTTGGTTGACATAAGAATATCACCCTGCAGGTGTTTCAGATGGCGAAGTTCATCAGCAATTACAAGCAGTTGAAAACTGCAAAGGACAATGGTTTTGGAAAATTAGAACTTCAGAATGGTGCATCAGATGTCTCGATCGGCCTGTTAATCGGCACCCCTAATGAGGTCTCTGAACTCATTGAAGACGGGAGCATGGTTTCGGATGAAATCAAGTACTTGGTATGCAGTCAACTATTCATACTACATCTCTAAAAATAAATTTTATCTGAAGTTTTCGTGGACAGTAATTGAAAAAAATAAACTGTTCCTTGCTCTGTTTAAGCCGCAGATATCACATCTTCTAGGATTGACCCTTCTTATTTTTGATAATCTGCTATAATTTTCAGTTATTTCTGCTTAAAATAGGCGCTAGGTTGCTAATTTAGATACGAAACTATATCGATATCTGGGTTCATATTCTCAGGAAACCATCAAGATTGTGAATTTTTTATATTGTTCTTATGAAACAGGTATTGGATGAGTTGGACACAATGTTCGACCTAGGCTTTGGCCCCAACATTAAAAAGATTTTAACTTCAGTAAAACAATCTACATCAAGACACTGCAATCAAAAGTGTCAATCTGTTGTGGTCACCTCGACGTTGATTAAGGTTATTTGTTCTACTTTGCCTCATTACTAGATATAGAACTTTTGTGCATTGATCACACGGGTTGGTTCATGAAACTTTTTCTCCGAGTTAATAATTTGTCGTATAAATTATAGATGTTGCACAAACAACATTCGTCCCTTGTGGAGTCTCTTAAGCGAAGCGATGGAGGAGAGATTGCTGCTATGCTTCTTGAAATTGAGGAAGAAGAGGCGTTCCATCTTATGGAATCTCCAGATACTCTGAAATGTAAACTTGCGGATGCGGTCGAGTCACTTCGTGCGTCCACAAATAGAACTTAAAACTTGATATCGACTTGTTTTACGTGATTGCACGTTAACTTTGAAAGACTGAATACGAATGGGCTGTTGTTTTTGTGTTTTTGGTGATAAAATTATCATTTCATTGCAAGATTGATTACATTCCAGGGGTTTGAAAGATACAAGGCTGCATACAATGGCGAGCTCTTAGGGAGAGGACAGAAAAACAAATGAAAGGTAGATTCTGAGATGATATTTTGTCTGTGATTGTCAATGTTTCTCTTCACTTCCAGGTGAGTAGAGGAAACTGAGTTCTAGCAGGGGTTACGACGTTTCCATTGGAGTCGTATAATATGACGCCCGAGAAGTCCGGTAGTTGACACTTCCCACCCATGAGTATGTTCTTCTCCCATACAGTAGCTCGTTGCTCTCTGCTGAAGAACATCTCGTCGTTGTCATTCTCCGGCTCGGTGGCATTCACAACACAGGTATTCACTCGTTGCGTAGTCACTACTGTCGCTTCTTGGTTAAGCTCTATTACAGGATCCTCAAACTCATAGCCATAATCCAAGCAAGCATTCCAGCGACGACGCCATTTCCGAGCATGGGAAGCACACATAAACAATGCAAAAGCACACAAGAGAAGGCTCGCACCAGCCATGCCAACCTGAGCTGTGGCTTGTGAAGAATGCATCATCATTTGTAGTTGCCTTGCCATTTTGGGGAAATCTGAAAGCTTGTTTGCTCTGAAGAAACTTTGAAGGCAACAGGTATTTATACAACGTTGGGTAAGTGGGGCTGTTGGTTTTGGAGGTTTTGTTGACCTGATTTGTGGTTTGGTGATCATTTTCCACTTATCTCTGCTTCTGATTAACTTTGCATTAATTTATTAATCCAACAACTCTTGACAGAGTTATAATCTTGTTCATGA

mRNA sequence

CCAAAATCAATTTTAATAAATTGACTAAAAATGAACGATAAATATCGTTAACTTCGAAATTTTAAAAACGTAACCTAACAATTGAACCTGAGGCAGGTTGAACGGCCTTACAGCACCGCCATGGGAAGTAGAAGGAAAGCTCTTCTCGAGCTCTCCCACTATTTGAACAGCCTCTCATGTCCAACGAAACGTTCCTCTTTCCACAATCCGGTAATCTCCTTGAACGCTTTCTTAGCTTCTCGATATTTTTCCTCTTCCTTCTCCAGAACCTCCGAAACGGAAAATGATCGACCGCCACGAACGGACAGAGAAGCGATGCTTCTTGAAAAGTTCAGGAACAGGAAACTCAAAGGCTCGTCGAATATCTCGAGAGAATCATTGAGTTCTAACTCTGCTGTGAAAGGGAGTGGGAACGGAGGTGAGAAGGTGATGACAGGTTTCAAGGAGTTGGGGCTTTATAATGAAGTGGCGGAGGCTGCGGAAGGGATGGGATTCTTTGTTCCTTCTGAGTTGCTTTGTGTAGGGATTCCAGCTCTTTTGGAAGGGAAGAATGTGGTATTGGGATCTCTTTATGGACCAGAAAGGGCTTTAACTTACTTGTTGCCTCTCATTCAGAATCTAAAAAGAGATGCAAAATCAAATGGTGTAAGGTCCAAGCATCCCCGAGCCTTCGTTATGTGCTCAACCACGGAGCTATCTGACGAGGTGTTTCAGATGGCGAAGTTCATCAGCAATTACAAGCAGTTGAAAACTGCAAAGGACAATGGTTTTGGAAAATTAGAACTTCAGAATGGTGCATCAGATGTCTCGATCGGCCTGTTAATCGGCACCCCTAATGAGGTCTCTGAACTCATTGAAGACGGGAGCATGGTTTCGGATGAAATCAAGTACTTGGTATTGGATGAGTTGGACACAATGTTCGACCTAGGCTTTGGCCCCAACATTAAAAAGATTTTAACTTCAGTAAAACAATCTACATCAAGACACTGCAATCAAAAGTGTCAATCTGTTGTGGTCACCTCGACGTTGATTAAGATGTTGCACAAACAACATTCGTCCCTTGTGGAGTCTCTTAAGCGAAGCGATGGAGGAGAGATTGCTGCTATGCTTCTTGAAATTGAGGAAGAAGAGGCGTTCCATCTTATGGAATCTCCAGATACTCTGAAATGTAAACTTGCGGATGCGGTCGAGTCACTTCGTGCGTCCACAAATAGAACTTAAAACTTGATATCGACTTGTTTTACGTGATTGCACGTTAACTTTGAAAGACTGAATACGAATGGGCTGTTGTTTTTGTGTTTTTGGTGATAAAATTATCATTTCATTGCAAGATTGATTACATTCCAGGGGTTTGAAAGATACAAGGCTGCATACAATGGCGAGCTCTTAGGGAGAGGACAGAAAAACAAATGAAAGGTAGATTCTGAGATGATATTTTGTCTGTGATTGTCAATGTTTCTCTTCACTTCCAGGTGAGTAGAGGAAACTGAGTTCTAGCAGGGGTTACGACGTTTCCATTGGAGTCGTATAATATGACGCCCGAGAAGTCCGGTAGTTGACACTTCCCACCCATGAGTATGTTCTTCTCCCATACAGTAGCTCGTTGCTCTCTGCTGAAGAACATCTCGTCGTTGTCATTCTCCGGCTCGGTGGCATTCACAACACAGGTATTCACTCGTTGCGTAGTCACTACTGTCGCTTCTTGGTTAAGCTCTATTACAGGATCCTCAAACTCATAGCCATAATCCAAGCAAGCATTCCAGCGACGACGCCATTTCCGAGCATGGGAAGCACACATAAACAATGCAAAAGCACACAAGAGAAGGCTCGCACCAGCCATGCCAACCTGAGCTGTGGCTTGTGAAGAATGCATCATCATTTGTAGTTGCCTTGCCATTTTGGGGAAATCTGAAAGCTTGTTTGCTCTGAAGAAACTTTGAAGGCAACAGGTATTTATACAACGTTGGGTAAGTGGGGCTGTTGGTTTTGGAGGTTTTGTTGACCTGATTTGTGGTTTGGTGATCATTTTCCACTTATCTCTGCTTCTGATTAACTTTGCATTAATTTATTAATCCAACAACTCTTGACAGAGTTATAATCTTGTTCATGA

Coding sequence (CDS)

ATGGGAAGTAGAAGGAAAGCTCTTCTCGAGCTCTCCCACTATTTGAACAGCCTCTCATGTCCAACGAAACGTTCCTCTTTCCACAATCCGGTAATCTCCTTGAACGCTTTCTTAGCTTCTCGATATTTTTCCTCTTCCTTCTCCAGAACCTCCGAAACGGAAAATGATCGACCGCCACGAACGGACAGAGAAGCGATGCTTCTTGAAAAGTTCAGGAACAGGAAACTCAAAGGCTCGTCGAATATCTCGAGAGAATCATTGAGTTCTAACTCTGCTGTGAAAGGGAGTGGGAACGGAGGTGAGAAGGTGATGACAGGTTTCAAGGAGTTGGGGCTTTATAATGAAGTGGCGGAGGCTGCGGAAGGGATGGGATTCTTTGTTCCTTCTGAGTTGCTTTGTGTAGGGATTCCAGCTCTTTTGGAAGGGAAGAATGTGGTATTGGGATCTCTTTATGGACCAGAAAGGGCTTTAACTTACTTGTTGCCTCTCATTCAGAATCTAAAAAGAGATGCAAAATCAAATGGTGTAAGGTCCAAGCATCCCCGAGCCTTCGTTATGTGCTCAACCACGGAGCTATCTGACGAGGTGTTTCAGATGGCGAAGTTCATCAGCAATTACAAGCAGTTGAAAACTGCAAAGGACAATGGTTTTGGAAAATTAGAACTTCAGAATGGTGCATCAGATGTCTCGATCGGCCTGTTAATCGGCACCCCTAATGAGGTCTCTGAACTCATTGAAGACGGGAGCATGGTTTCGGATGAAATCAAGTACTTGGTATTGGATGAGTTGGACACAATGTTCGACCTAGGCTTTGGCCCCAACATTAAAAAGATTTTAACTTCAGTAAAACAATCTACATCAAGACACTGCAATCAAAAGTGTCAATCTGTTGTGGTCACCTCGACGTTGATTAAGATGTTGCACAAACAACATTCGTCCCTTGTGGAGTCTCTTAAGCGAAGCGATGGAGGAGAGATTGCTGCTATGCTTCTTGAAATTGAGGAAGAAGAGGCGTTCCATCTTATGGAATCTCCAGATACTCTGAAATGTAAACTTGCGGATGCGGTCGAGTCACTTCGTGCGTCCACAAATAGAACTTAA

Protein sequence

MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVTSTLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLRASTNRT

Homology

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BLAST of CmaCh04G024690 vs. ExPASy Swiss-Prot
Match: Q5VRY0 (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0184500 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.3e-45
Identity = 105/276 (38.04%), Postives = 164/276 (59.42%), Query Frame = 0


Query: 44  SSSFSRTSETENDRPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGE-- 103
           +S+ +  +E E        R  +LLE+ R R LKG    +           G G G +  
Sbjct: 41  ASAVTAPTEPETTAREAPSRHELLLERLRQRHLKGVPAATPRPAQREKGRGGGGGGAQEL 100

Query: 104 ------KVMTGFKELGLYNEVAEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPER 163
                 +V+  F+ELGL  EV  A   MG   P+E+ CVG+PA+L G +VVLGS  G  +
Sbjct: 101 QQKRRVEVVDSFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGK 160

Query: 164 ALTYLLPLIQNLKRDAKSNG--VRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAK 223
            L YLLPL+Q L+RD    G  ++ + PRA V+C T EL+++VF++AK IS++ + ++  
Sbjct: 161 TLAYLLPLVQLLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTM 220

Query: 224 DNGFGKLELQNGASDVSIGLLIGTPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFGP 283
            +G  ++  Q  + ++ + +++GTP  + + I+DG+MV  +IKYLVLDE DTMFD GFGP
Sbjct: 221 VSGGSRIRPQEDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGP 280

Query: 284 NIKKILTSVKQSTSRHCNQKCQSVVVTSTLIKMLHK 310
           +I+K L  +K   ++  +Q  Q+V+VT+T+ K + K
Sbjct: 281 DIRKFLAPLKNRAAKPGDQGFQTVLVTATMTKAVQK 316

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BLAST of CmaCh04G024690 vs. ExPASy Swiss-Prot
Match: Q56X76 (DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 PE=2 SV=2)

HSP 1 Score: 171.0 bits (432), Expect = 2.5e-41
Identity = 102/271 (37.64%), Postives = 168/271 (61.99%), Query Frame = 0


Query: 44  SSSFSRTSETENDRPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGN---GG 103
           +++ S T+ET N   P   +  +LLE+ R R LK S+   ++  SS   V+   +     
Sbjct: 49  ATTSSPTTET-NVTDPDQLKHTILLERLRLRHLKESAKPPQQRPSSVVGVEEESSIRKKS 108

Query: 104 EKVMTGFKELGLYNEVAEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYL 163
           +K++  F+ELGL  EV  A + +   VP+E+ C+GIPA++E K+VVLGS  G  + L YL
Sbjct: 109 KKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYL 168

Query: 164 LPLIQNLKRDAKSNGVRSK--HPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFG 223
           LP++Q ++ D  + G ++K   PR  V+C T ELS++V+++AK IS++ + ++   +G  
Sbjct: 169 LPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGS 228

Query: 224 KLELQNGASDVSIGLLIGTPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKI 283
           ++  Q  + + +I +++GTP  + + IE+G+MV  +I YLVLDE DTMFD GFGP I+K 
Sbjct: 229 RIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKF 288

Query: 284 LTSVKQSTSRHCNQKCQSVVVTSTLIKMLHK 310
           L  + Q   +  +Q  Q+V+VT+T+   + K
Sbjct: 289 LAPLNQRALKTNDQGFQTVLVTATMTMAVQK 318

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BLAST of CmaCh04G024690 vs. ExPASy Swiss-Prot
Match: P42305 (ATP-dependent RNA helicase DbpA OS=Bacillus subtilis (strain 168) OX=224308 GN=dbpA PE=1 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-16
Identity = 68/271 (25.09%), Postives = 131/271 (48.34%), Query Frame = 0


Query: 104 MTGFKELGLYNEVAEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPL 163
           M+ FK   + +++  A EG+G+  P+++    IPA LE K++V+ S  G  +  ++ +PL
Sbjct: 1   MSHFKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL 60

Query: 164 IQNLKRDAKSNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQ 223
            +    D          P+A ++  T EL+ +V +    I  +K++K     G    + Q
Sbjct: 61  CELANWD-------ENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQ 120

Query: 224 NGASDVSIGLLIGTPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVK 283
                    +++GTP  V + IE G++  D + YLV+DE D M ++GF   ++ I+    
Sbjct: 121 KAELKQKSHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAII---- 180

Query: 284 QSTSRHCNQKCQSVVVTSTL---IKMLHKQHSSLVESLKRSDGG----EIAAMLLEIEEE 343
               +H   +  +++ ++TL   I+ L +Q+    E ++    G     I   ++++ EE
Sbjct: 181 ----KHLPTERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREE 240

Query: 344 EAFHLM------ESPDT--LKCKLADAVESL 360
             F L+      E+PD+  + C+  + V  L
Sbjct: 241 NKFSLLKDVLMTENPDSCIIFCRTKEHVNQL 256

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BLAST of CmaCh04G024690 vs. ExPASy Swiss-Prot
Match: Q12S35 (ATP-dependent RNA helicase RhlB OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) OX=318161 GN=rhlB PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-15
Identity = 49/182 (26.92%), Postives = 89/182 (48.90%), Query Frame = 0


Query: 107 FKELGLYNEVAEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQN 166
           F +L L+ EV +A    GF   + +  + +P LL+ K++   +  G  + + +L+    +
Sbjct: 11  FADLPLHAEVIQALNENGFEFCTPIQALSLPVLLKAKDIAGQAQTGTGKTMAFLVATFNH 70

Query: 167 LKRDAKSNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGA 226
           L             PRA +M  T EL+ ++ + A  ++ +  LK     G    E+Q   
Sbjct: 71  LLTTPAPQARELNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYGGESYEVQREV 130

Query: 227 SDVSIGLLIGTPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQST 286
            D  + +LIGT   + + +  G +  + I+ +VLDE D MFDLGF  +I+ +   +  ++
Sbjct: 131 LDKGVDILIGTTGRIIDYVRQGVISLNSIQAVVLDEADRMFDLGFIKDIRFLFRRMPDAS 190

Query: 287 SR 289
           SR
Sbjct: 191 SR 192

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BLAST of CmaCh04G024690 vs. ExPASy Swiss-Prot
Match: A5UDI1 (ATP-dependent RNA helicase RhlB OS=Haemophilus influenzae (strain PittEE) OX=374930 GN=rhlB PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.0e-15
Identity = 53/173 (30.64%), Postives = 89/173 (51.45%), Query Frame = 0


Query: 107 FKELGLYNEVAEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQN 166
           F +L L+  V +     GF   + +  + +P  L G++V   +  G  + + +L     +
Sbjct: 11  FSDLSLHPIVRDTLAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFHH 70

Query: 167 LKRDAKSNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGA 226
           L      N +   HPRA ++ ST EL+ ++   A+F++    LKTA   G    + Q  A
Sbjct: 71  LLTHQDPN-LEYPHPRALILASTRELAVQISNDAEFLAKACGLKTALAYGGDGYDKQLQA 130

Query: 227 SDVSIGLLIGTPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKIL 280
            +  + +LIGT   V + ++ G +  DEI+ +VLDE D MFDLGF  +I+ +L
Sbjct: 131 IERGVDILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLL 182

[Close]

BLAST of CmaCh04G024690 vs. ExPASy TrEMBL
Match: A0A6J1JT03 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita maxima OX=3661 GN=LOC111487576 PE=4 SV=1)

HSP 1 Score: 701.8 bits (1810), Expect = 1.5e-198
Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0


Query: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPR 60
           MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPR
Sbjct: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120

Query: 121 EGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKH 180
           EGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKH
Sbjct: 121 EGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT
Sbjct: 241 VSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300

Query: 301 STLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360
           STLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR
Sbjct: 301 STLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360

Query: 361 ASTNRT 367
           ASTNRT
Sbjct: 361 ASTNRT 366

[Close]

BLAST of CmaCh04G024690 vs. ExPASy TrEMBL
Match: A0A6J1H541 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita moschata OX=3662 GN=LOC111460659 PE=4 SV=1)

HSP 1 Score: 671.0 bits (1730), Expect = 2.8e-189
Identity = 350/366 (95.63%), Postives = 356/366 (97.27%), Query Frame = 0


Query: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPR 60
           MGSRRKALLEL HY+NSLSCPTK + FHNPV S NAFLASRYFSSSFSRT  TENDRPPR
Sbjct: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120

Query: 121 EGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKH 180
           EGMGFFVPSEL CVGIPALLEGKNVVLGSLYGPERAL YLLPLIQNLKRDAK+NGVRSKH
Sbjct: 121 EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFG+LELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGS+VSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT
Sbjct: 241 VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300

Query: 301 STLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360
           STLIKMLH+QHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR
Sbjct: 301 STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360

Query: 361 ASTNRT 367
            STNRT
Sbjct: 361 VSTNRT 366

[Close]

BLAST of CmaCh04G024690 vs. ExPASy TrEMBL
Match: A0A6J1BZL0 (DEAD-box ATP-dependent RNA helicase 39-like OS=Momordica charantia OX=3673 GN=LOC111006682 PE=4 SV=1)

HSP 1 Score: 515.4 bits (1326), Expect = 2.0e-142
Identity = 277/370 (74.86%), Postives = 305/370 (82.43%), Query Frame = 0


Query: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTS----ETEND 60
           MGSR KALLELS     L CPT  S+   P  S    L SR +SSSFSRTS      END
Sbjct: 1   MGSRTKALLELSRRAKLLLCPTNPSTLPKPSSSTTTSLISRIYSSSFSRTSAGDTAAEND 60

Query: 61  RPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEV 120
           RPP++DR++MLLEKFR RKLKGSS I++ES SS SA        EKVMTGFKELGL NEV
Sbjct: 61  RPPQSDRDSMLLEKFRLRKLKGSSKITQESSSSTSA--------EKVMTGFKELGLCNEV 120

Query: 121 AEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGV 180
           AEA E MGFFVPSEL CVGIPALLEGKNVVLGSL GPERAL YLLP IQ+LKRD K N +
Sbjct: 121 AEAVEEMGFFVPSELHCVGIPALLEGKNVVLGSLSGPERALAYLLPFIQSLKRDGKKNDI 180

Query: 181 RSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIG 240
           RSKHPRAF++CST ELSDEVFQMAKFIS Y QLK+++DN   +LELQ G SDVSIG+L+G
Sbjct: 181 RSKHPRAFILCSTAELSDEVFQMAKFISGYGQLKSSRDNNCAQLELQEGGSDVSIGMLVG 240

Query: 241 TPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQS 300
           TP+EVSELIE+GS+V DEIKYLVLDELDTMFDLGFGPNIKKILTS+   TSRHCNQKCQS
Sbjct: 241 TPDEVSELIEEGSVVPDEIKYLVLDELDTMFDLGFGPNIKKILTSLNHYTSRHCNQKCQS 300

Query: 301 VVVTSTLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAV 360
           VVVTST+IKMLH+QHSSLVESLKR D GEIAAMLLEI+E+EAFHLMESPDT+KCKLADAV
Sbjct: 301 VVVTSTMIKMLHEQHSSLVESLKRDDAGEIAAMLLEIDEDEAFHLMESPDTMKCKLADAV 360

Query: 361 ESLRASTNRT 367
           +SL AST  T
Sbjct: 361 KSLHASTKGT 362

[Close]

BLAST of CmaCh04G024690 vs. ExPASy TrEMBL
Match: A0A5A7SLY8 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G003970 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 1.9e-129
Identity = 259/370 (70.00%), Postives = 294/370 (79.46%), Query Frame = 0


Query: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTS----ETEND 60
           MGSRRKALLELSH  N L  PTKRS F N  +S NA LAS + SS+FSR+S      END
Sbjct: 1   MGSRRKALLELSHCANILLSPTKRSIFPNFALSANALLASPFCSSTFSRSSADGTPVEND 60

Query: 61  RPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEV 120
           +PP+++R++ LLEKFR RKLKG S IS+ S SS        NGGEKVMTGF++LGL NE+
Sbjct: 61  QPPQSNRDSTLLEKFRLRKLKGLSKISQHSSSS--------NGGEKVMTGFRQLGLCNEL 120

Query: 121 AEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGV 180
           A A E MG   PSEL C  IPA+LEGKNVVLG L GPERAL YLLPLIQNLKRD K  G 
Sbjct: 121 AGAVEEMGILAPSELDCAAIPAVLEGKNVVLGYLNGPERALAYLLPLIQNLKRDEKRYGT 180

Query: 181 RSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIG 240
           RSKHPRAFVMC T +LS+E+F MAK+ISNY+QLKT +DN  G+LELQ  ASDVSIGLLIG
Sbjct: 181 RSKHPRAFVMCPTAQLSEELFCMAKYISNYRQLKTPRDNSCGELELQKSASDVSIGLLIG 240

Query: 241 TPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQS 300
           TP+E+SELIE+GS+V DEI YLV DELD+MFDLGFGPNIKKILTSV     RHCN+KC+S
Sbjct: 241 TPDEISELIEEGSVVLDEINYLVFDELDSMFDLGFGPNIKKILTSV-----RHCNEKCRS 300

Query: 301 VVVTSTLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAV 360
           +VVTSTLIKM+H+Q SSLV+SL+  D GEIAAM+LEIEEEEAFHLMESPD LK KLAD V
Sbjct: 301 IVVTSTLIKMMHEQRSSLVKSLRCGDAGEIAAMVLEIEEEEAFHLMESPDALKSKLADVV 357

Query: 361 ESLRASTNRT 367
           ESLR ST  T
Sbjct: 361 ESLRPSTQET 357

[Close]

BLAST of CmaCh04G024690 vs. ExPASy TrEMBL
Match: A0A1S3C4L0 (DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo OX=3656 GN=LOC103496581 PE=4 SV=1)

HSP 1 Score: 472.2 bits (1214), Expect = 1.9e-129
Identity = 259/370 (70.00%), Postives = 294/370 (79.46%), Query Frame = 0


Query: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTS----ETEND 60
           MGSRRKALLELSH  N L  PTKRS F N  +S NA LAS + SS+FSR+S      END
Sbjct: 1   MGSRRKALLELSHCANILLSPTKRSIFPNFALSANALLASPFCSSTFSRSSADGTPVEND 60

Query: 61  RPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEV 120
           +PP+++R++ LLEKFR RKLKG S IS+ S SS        NGGEKVMTGF++LGL NE+
Sbjct: 61  QPPQSNRDSTLLEKFRLRKLKGLSKISQHSSSS--------NGGEKVMTGFRQLGLCNEL 120

Query: 121 AEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGV 180
           A A E MG   PSEL C  IPA+LEGKNVVLG L GPERAL YLLPLIQNLKRD K  G 
Sbjct: 121 AGAVEEMGILAPSELDCAAIPAVLEGKNVVLGYLNGPERALAYLLPLIQNLKRDEKRYGT 180

Query: 181 RSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIG 240
           RSKHPRAFVMC T +LS+E+F MAK+ISNY+QLKT +DN  G+LELQ  ASDVSIGLLIG
Sbjct: 181 RSKHPRAFVMCPTAQLSEELFCMAKYISNYRQLKTPRDNSCGELELQKSASDVSIGLLIG 240

Query: 241 TPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQS 300
           TP+E+SELIE+GS+V DEI YLV DELD+MFDLGFGPNIKKILTSV     RHCN+KC+S
Sbjct: 241 TPDEISELIEEGSVVLDEINYLVFDELDSMFDLGFGPNIKKILTSV-----RHCNEKCRS 300

Query: 301 VVVTSTLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAV 360
           +VVTSTLIKM+H+Q SSLV+SL+  D GEIAAM+LEIEEEEAFHLMESPD LK KLAD V
Sbjct: 301 IVVTSTLIKMMHEQRSSLVKSLRCGDAGEIAAMVLEIEEEEAFHLMESPDALKSKLADVV 357

Query: 361 ESLRASTNRT 367
           ESLR ST  T
Sbjct: 361 ESLRPSTQET 357

[Close]

BLAST of CmaCh04G024690 vs. NCBI nr
Match: XP_022990794.1 (DEAD-box ATP-dependent RNA helicase 39-like [Cucurbita maxima])

HSP 1 Score: 701.8 bits (1810), Expect = 3.1e-198
Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0


Query: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPR 60
           MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPR
Sbjct: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120

Query: 121 EGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKH 180
           EGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKH
Sbjct: 121 EGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT
Sbjct: 241 VSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300

Query: 301 STLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360
           STLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR
Sbjct: 301 STLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360

Query: 361 ASTNRT 367
           ASTNRT
Sbjct: 361 ASTNRT 366

[Close]

BLAST of CmaCh04G024690 vs. NCBI nr
Match: XP_022959642.1 (DEAD-box ATP-dependent RNA helicase 39-like [Cucurbita moschata])

HSP 1 Score: 671.0 bits (1730), Expect = 5.8e-189
Identity = 350/366 (95.63%), Postives = 356/366 (97.27%), Query Frame = 0


Query: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPR 60
           MGSRRKALLEL HY+NSLSCPTK + FHNPV S NAFLASRYFSSSFSRT  TENDRPPR
Sbjct: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRYFSSSFSRTLTTENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120

Query: 121 EGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKH 180
           EGMGFFVPSEL CVGIPALLEGKNVVLGSLYGPERAL YLLPLIQNLKRDAK+NGVRSKH
Sbjct: 121 EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFG+LELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGS+VSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT
Sbjct: 241 VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300

Query: 301 STLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360
           STLIKMLH+QHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR
Sbjct: 301 STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360

Query: 361 ASTNRT 367
            STNRT
Sbjct: 361 VSTNRT 366

[Close]

BLAST of CmaCh04G024690 vs. NCBI nr
Match: KAG6602207.1 (DEAD-box ATP-dependent RNA helicase 39, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 663.7 bits (1711), Expect = 9.2e-187
Identity = 346/366 (94.54%), Postives = 354/366 (96.72%), Query Frame = 0


Query: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPR 60
           MGSRRKALLEL HY+NSLSCPTK + FHNPV S NAFLASR+FS  FSRT  TENDRPPR
Sbjct: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRHFSYPFSRTFTTENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEA 
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAV 120

Query: 121 EGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKH 180
           EGMGFFVPSEL CVGIPALLEGKNVVLGSLYGPERAL YLLPLIQNLKRDAK+NGVRSKH
Sbjct: 121 EGMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNY+QLKTAKDNGFG+LELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYRQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGS+VSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT
Sbjct: 241 VSELIEDGSVVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300

Query: 301 STLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360
           STLIKMLH+QHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR
Sbjct: 301 STLIKMLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360

Query: 361 ASTNRT 367
           ASTNRT
Sbjct: 361 ASTNRT 366

[Close]

BLAST of CmaCh04G024690 vs. NCBI nr
Match: XP_023512464.1 (DEAD-box ATP-dependent RNA helicase 39-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023512472.1 DEAD-box ATP-dependent RNA helicase 39-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 611.7 bits (1576), Expect = 4.2e-171
Identity = 324/356 (91.01%), Postives = 331/356 (92.98%), Query Frame = 0


Query: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPR 60
           MGSRRKALLEL HY NSLSCPTK + FHNPVIS NAFLASR+FSSSFSRT  TENDRPPR
Sbjct: 1   MGSRRKALLELYHYANSLSCPTKGNVFHNPVISTNAFLASRHFSSSFSRTFTTENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLY+EVAEAA
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYDEVAEAA 120

Query: 121 EGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKH 180
           EGMGFFVPS L CVGIPALLEGKNVVLGSLY PERAL YLLPLIQNLKRDAK+NGVRSKH
Sbjct: 121 EGMGFFVPSALHCVGIPALLEGKNVVLGSLYRPERALAYLLPLIQNLKRDAKTNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFG+LELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGS+VSDEIKYLV DELD MFDLGFGPNIKKILTSVKQSTSR CNQKCQSVV T
Sbjct: 241 VSELIEDGSVVSDEIKYLVFDELDRMFDLGFGPNIKKILTSVKQSTSRPCNQKCQSVVAT 300

Query: 301 STLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAV 357
           STLIKMLH+QHSSLV         EIAAMLLEIEEEE FHLMESPDTLKCKLADAV
Sbjct: 301 STLIKMLHEQHSSLV---------EIAAMLLEIEEEEPFHLMESPDTLKCKLADAV 347

[Close]

BLAST of CmaCh04G024690 vs. NCBI nr
Match: KAG7032889.1 (DEAD-box ATP-dependent RNA helicase 39 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 544.3 bits (1401), Expect = 8.2e-151
Identity = 296/366 (80.87%), Postives = 305/366 (83.33%), Query Frame = 0


Query: 1   MGSRRKALLELSHYLNSLSCPTKRSSFHNPVISLNAFLASRYFSSSFSRTSETENDRPPR 60
           MGSRRKALLEL HY+NSLSCPTK + FHNPV S NAFLASR+FS  FSRT  TENDRPPR
Sbjct: 1   MGSRRKALLELYHYVNSLSCPTKGNVFHNPVNSTNAFLASRHFSYPFSRTFTTENDRPPR 60

Query: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAA 120
           TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEA 
Sbjct: 61  TDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGNGGEKVMTGFKELGLYNEVAEAV 120

Query: 121 EGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQNLKRDAKSNGVRSKH 180
           E MGFFVPSEL CVGIPALLEGKNVVLGSLYGPERAL YLLPLIQNLKRDAK+NGVRSKH
Sbjct: 121 EEMGFFVPSELHCVGIPALLEGKNVVLGSLYGPERALAYLLPLIQNLKRDAKTNGVRSKH 180

Query: 181 PRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFGKLELQNGASDVSIGLLIGTPNE 240
           PRAFVMCSTTELSDEVFQMAKFISNY+QLKTAKDNGFG+LELQNGASDVSIGLLIGTPNE
Sbjct: 181 PRAFVMCSTTELSDEVFQMAKFISNYRQLKTAKDNGFGQLELQNGASDVSIGLLIGTPNE 240

Query: 241 VSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKILTSVKQSTSRHCNQKCQSVVVT 300
           VSELIEDGS+VSDEIKYL                                          
Sbjct: 241 VSELIEDGSVVSDEIKYL------------------------------------------ 300

Query: 301 STLIKMLHKQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLADAVESLR 360
                MLH+QHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLA+AVESLR
Sbjct: 301 -----MLHEQHSSLVESLKRSDGGEIAAMLLEIEEEEAFHLMESPDTLKCKLANAVESLR 319

Query: 361 ASTNRT 367
            STNRT
Sbjct: 361 VSTNRT 319

[Close]

BLAST of CmaCh04G024690 vs. TAIR 10
Match: AT4G09730.1 (RH39 )

HSP 1 Score: 171.0 bits (432), Expect = 1.8e-42
Identity = 102/271 (37.64%), Postives = 168/271 (61.99%), Query Frame = 0


Query: 44  SSSFSRTSETENDRPPRTDREAMLLEKFRNRKLKGSSNISRESLSSNSAVKGSGN---GG 103
           +++ S T+ET N   P   +  +LLE+ R R LK S+   ++  SS   V+   +     
Sbjct: 49  ATTSSPTTET-NVTDPDQLKHTILLERLRLRHLKESAKPPQQRPSSVVGVEEESSIRKKS 108

Query: 104 EKVMTGFKELGLYNEVAEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYL 163
           +K++  F+ELGL  EV  A + +   VP+E+ C+GIPA++E K+VVLGS  G  + L YL
Sbjct: 109 KKLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYL 168

Query: 164 LPLIQNLKRDAKSNGVRSK--HPRAFVMCSTTELSDEVFQMAKFISNYKQLKTAKDNGFG 223
           LP++Q ++ D  + G ++K   PR  V+C T ELS++V+++AK IS++ + ++   +G  
Sbjct: 169 LPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGS 228

Query: 224 KLELQNGASDVSIGLLIGTPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKI 283
           ++  Q  + + +I +++GTP  + + IE+G+MV  +I YLVLDE DTMFD GFGP I+K 
Sbjct: 229 RIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKF 288

Query: 284 LTSVKQSTSRHCNQKCQSVVVTSTLIKMLHK 310
           L  + Q   +  +Q  Q+V+VT+T+   + K
Sbjct: 289 LAPLNQRALKTNDQGFQTVLVTATMTMAVQK 318

[Close]

BLAST of CmaCh04G024690 vs. TAIR 10
Match: AT1G12770.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 5.3e-15
Identity = 43/184 (23.37%), Postives = 94/184 (51.09%), Query Frame = 0


Query: 107 FKELGLYNEVAEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYGPERALTYLLPLIQN 166
           F+ELGL + + ++ E  GF VP+++    +PA+++G + V+ S  G  + L YLLP++  
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171

Query: 167 L------KRDAKSNGVRSKHPRAFVMCSTTELSDEVFQMAKFISN--YKQLKTAKDNGFG 226
           +       R + S   +    +A ++  + EL  ++ +  + +    ++++      G  
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGAN 231

Query: 227 KLELQNGASDVSIGLLIGTPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFGPNIKKI 283
           ++  +         +++GTP  ++E+ + G + +   ++LVLDE+D +    F  +I +I
Sbjct: 232 RMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRI 291

[Close]

BLAST of CmaCh04G024690 vs. TAIR 10
Match: AT2G42520.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-14
Identity = 48/190 (25.26%), Postives = 91/190 (47.89%), Query Frame = 0


Query: 93  VKGSGNGGEKVMTGFKELGLYNEVAEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYG 152
           ++ SG+     +  F E+ L   +        +  P+ +    IP LLEG++++  +  G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206

Query: 153 PERALTYLLPLIQNLKRD---AKSNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQL 212
             +   +  P+I  + +D    +  G R+ +P A ++  T EL+ ++   AK  S    +
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266

Query: 213 KTAKDNGFGKLELQNGASDVSIGLLIGTPNEVSELIEDGSMVSDEIKYLVLDELDTMFDL 272
           K     G   +  Q    +  + +L+ TP  +++L+E   +    I++L LDE D M D+
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 326

Query: 273 GFGPNIKKIL 280
           GF P I+KI+
Sbjct: 327 GFEPQIRKIV 336

[Close]

BLAST of CmaCh04G024690 vs. TAIR 10
Match: AT3G58570.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-13
Identity = 46/190 (24.21%), Postives = 91/190 (47.89%), Query Frame = 0


Query: 93  VKGSGNGGEKVMTGFKELGLYNEVAEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYG 152
           ++ SG+     +  F E+ L   +    +   +  P+ +    IP L  G++++  +  G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193

Query: 153 PERALTYLLPLIQNLKRD---AKSNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQL 212
             +   +  P+I  + +D    +  GVR  +P A ++  T EL+ ++   A+  S    +
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGV 253

Query: 213 KTAKDNGFGKLELQNGASDVSIGLLIGTPNEVSELIEDGSMVSDEIKYLVLDELDTMFDL 272
           K     G   +  Q    +  + +L+ TP  +++L+E G +    +++L LDE D M D+
Sbjct: 254 KVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDM 313

Query: 273 GFGPNIKKIL 280
           GF P I+KI+
Sbjct: 314 GFEPQIRKIV 323

[Close]

BLAST of CmaCh04G024690 vs. TAIR 10
Match: AT2G47330.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-13
Identity = 44/191 (23.04%), Postives = 92/191 (48.17%), Query Frame = 0


Query: 93  VKGSGNGGEKVMTGFKELGLYNEVAEAAEGMGFFVPSELLCVGIPALLEGKNVVLGSLYG 152
           ++ SG    + +  F++ G  +++  A +   +  P+ + C  +P +L G++V+  +  G
Sbjct: 216 IRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTG 275

Query: 153 PERALTYLLPLIQNLKRDAKSNGVRSKHPRAFVMCSTTELSDEVFQMAKFISNYKQLKTA 212
             +   ++LP+I ++    +    R + P   +   T EL+ ++F  AK  S    L+ +
Sbjct: 276 SGKTAAFVLPMIVHIMDQPELQ--RDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVS 335

Query: 213 KDNGFGKLELQNGASDVSIGLLIGTPNEVSELIEDGSMVSDEIKYLVLDELDTMFDLGFG 272
              G      Q         +++ TP  + ++++  ++      YLVLDE D MFDLGF 
Sbjct: 336 AVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFE 395

Query: 273 PNIKKILTSVK 284
           P ++ I+  ++
Sbjct: 396 PQVRSIVGQIR 404

The following BLAST results are available for this feature:

BLAST of CmaCh04G024690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5VRY0	6.3e-45	38.04	DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q56X76	2.5e-41	37.64	DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana OX=3702 GN=RH39 P...	[more]
P42305	1.2e-16	25.09	ATP-dependent RNA helicase DbpA OS=Bacillus subtilis (strain 168) OX=224308 GN=d...	[more]
Q12S35	3.0e-15	26.92	ATP-dependent RNA helicase RhlB OS=Shewanella denitrificans (strain OS217 / ATCC...	[more]
A5UDI1	4.0e-15	30.64	ATP-dependent RNA helicase RhlB OS=Haemophilus influenzae (strain PittEE) OX=374...	[more]

BLAST of CmaCh04G024690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JT03	1.5e-198	100.00	DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1H541	2.8e-189	95.63	DEAD-box ATP-dependent RNA helicase 39-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1BZL0	2.0e-142	74.86	DEAD-box ATP-dependent RNA helicase 39-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A5A7SLY8	1.9e-129	70.00	DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C4L0	1.9e-129	70.00	DEAD-box ATP-dependent RNA helicase 39-like OS=Cucumis melo OX=3656 GN=LOC103496...	[more]

BLAST of CmaCh04G024690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990794.1	3.1e-198	100.00	DEAD-box ATP-dependent RNA helicase 39-like [Cucurbita maxima]	[more]
XP_022959642.1	5.8e-189	95.63	DEAD-box ATP-dependent RNA helicase 39-like [Cucurbita moschata]	[more]
KAG6602207.1	9.2e-187	94.54	DEAD-box ATP-dependent RNA helicase 39, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023512464.1	4.2e-171	91.01	DEAD-box ATP-dependent RNA helicase 39-like isoform X1 [Cucurbita pepo subsp. pe...	[more]
KAG7032889.1	8.2e-151	80.87	DEAD-box ATP-dependent RNA helicase 39 [Cucurbita argyrosperma subsp. argyrosper...	[more]

BLAST of CmaCh04G024690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09730.1	1.8e-42	37.64	RH39	[more]
AT1G12770.1	5.3e-15	23.37	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G42520.1	2.0e-14	25.26	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G58570.1	1.3e-13	24.21	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G47330.1	1.7e-13	23.04	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002004	Polyadenylate-binding protein/Hyperplastic disc protein	SMART	SM00517	poly_2	coord: 306..362 e-value: 0.0046 score: 10.5
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 124..336 e-value: 1.1E-4 score: 31.6
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 136..321 score: 17.236601
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 136..305 e-value: 4.5E-19 score: 68.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 68..319 e-value: 2.0E-33 score: 117.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 102..306
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..98
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 75..361
None	No IPR available	PANTHER	PTHR24031:SF694	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE ISOFORM X1	coord: 75..361
IPR036053	PABC (PABP) domain	SUPERFAMILY	63570	PABC (PABP) domain	coord: 313..363

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G024690.1	CmaCh04G024690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902775	mitochondrial large ribosomal subunit assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding