CmaCh04G024570 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G024570
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	light-harvesting complex-like protein OHP2, chloroplastic
Location	Cma_Chr04: 16891699 .. 16893796 (-)
RNA-Seq Expression	CmaCh04G024570
Synteny	CmaCh04G024570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCATTCCCTAAACCCCTCAATGGCTTGTATTCTTCTGAAACTTGGCCACATCGTATCCACACCAAACATATCCACTCGATTTTGACTTCAATTCCTCAAATCCGAATCCATTTCAGTTCCACAAGAATCTGATAGAGAAATTTCAGAGATAGAAGGCGAAATGTCGGGGGCCTGTTCATTCCCCTTTGCCAAAATCAAAATCCCCACCGTTTCCTCGTCGTCGGCGGCCGTTTCTCCGTCGGCTTCGGCTGTCAGTTCCACTTCTTCATCGTCCGCTCACAGTTCCATCAGATTCTCCTCCTCCAAACCTTTTGTCTTCACCATTCGGAGCTCTCAGACCGACGGCCCTATCAGGAGACCGGCGGCTCCTTCTCTGAGAGAGCCGTCGCCGCCTTCGCCGCCGCCTCCTCTCAAGCCGACTCCTACTTCGGCGACGGCTCCTTTTTCTCAGCCGTCGGCAAAGGCGTATGTTGCAAAACAGGATAATACGATCACTTTAGAGTTTCAGAGGCAGAAGGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAGGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCCAATGGGAGGTGATTTCATTTCCTCTTTTCTCCTCCGATTTTATCGATGATTATTAAATTTTGAAGCTGGATATCCTCACTAATGAACACCATTATAAGTTTTGATTATGTTCAAGTGCCTAAACTAGTGAACTCCATTCCTTTTAGCACAAGTACAAGAATTCTTTCTTTATCTTCATGGATAACCAATCCATTTCCCATATAGTTTGGAGGATCGTTTGTACGACTGCTTCTGTTCGAGAATCATATCCACTGTGTTTTGTGCTGATTTTATTCAAAATCCAAATGTTACTGCATTCAATTTAGATTAAGAATGTATTTGATTTAGATGTTCGCGATAAGAAGTCGATACCTATGATCGAAGTTATATTCTCTATAACATAGGTCTTATCTACGCAAGGAATGAAGAACATACGAAAGCTTTGAAGTATTATTTTCAGCCACTAGAACAAAACCCGTTTTCACCACAATCTATGGCTGTGATCTTTAATGAGCTGTAGCAAAGAAAGAAACTTCATAGAAGTAGAAATATGAATGTCTAGATACTTTATTCTATAGATAAAGGATCTAATTGATAGAAGAATCACGGTAAAGATCAAATATTGTAACAGCTCAATCCCACCTAGTATATATTATCCTCTTTGAGCTTTCCCTTAAGATTTTTAGAACGCGTCTACTAGGGAGATGTTTCCACATACTTATAAAGGATACTTCGTTTTCCTCTCCAACCGATGTGGGATCTCACAATCCACTCCTTTTAGGGCCCTGCGTCCTCGTTAGCCCTCGTTCCCCTCTCCAATCGATGTGGTATCTCACACTCCACCCCTTTCAGGGTCCTGCGGCCTCGTTAGCCCTCGTTCCCCTCTCCAATCGATGTGGTATCTCACACTCCACGCCTTTCAGGGCCCTGCGTCCTCGTTAGCCCTCGTTCCTCTCTCCAATCAACGTGGGATCTCACACATATCCATGTGTTTTGTGTTGATTTTATGGAAATGGAATGTATTTGATTTAGATGTTGCTCCTGAAGATTTGAATCTGACTGAGTTAAACTGGTTCTTTGTGTACCTTCATTCCATATTTTACTGAATCTCATATTTGCTAGTAACAATCAGCTGTTCATTTGACTGGTTAAGGGTCATCACTTCTCTTACTGAGACGTTTTTCCCCAACAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTGCTGACAGAGTATGCAACTGGGTCAAACTTCGTTGATCAAGTAAAGATCCTCCTTTCAAATTTTGGGATAGTTGATCTCGATTGACACGATGAACAAGGTCGATGTTTAATTTTTAATGTATCTACATCTTGTAATTCATTTCATAGTGTTCTTGAGATTTGTTGTTTGATACACAAATTGCCATTCAAGTTTGTGCTCCTTGCAATGCTTACTGTTCTGTTATATATAAAGTTCTTTCTTAAGGATAGTCATAGCTGACCTAACTGAACTATTCTCACCAAC

mRNA sequence

TTCTTCATTCCCTAAACCCCTCAATGGCTTGTATTCTTCTGAAACTTGGCCACATCGTATCCACACCAAACATATCCACTCGATTTTGACTTCAATTCCTCAAATCCGAATCCATTTCAGTTCCACAAGAATCTGATAGAGAAATTTCAGAGATAGAAGGCGAAATGTCGGGGGCCTGTTCATTCCCCTTTGCCAAAATCAAAATCCCCACCGTTTCCTCGTCGTCGGCGGCCGTTTCTCCGTCGGCTTCGGCTGTCAGTTCCACTTCTTCATCGTCCGCTCACAGTTCCATCAGATTCTCCTCCTCCAAACCTTTTGTCTTCACCATTCGGAGCTCTCAGACCGACGGCCCTATCAGGAGACCGGCGGCTCCTTCTCTGAGAGAGCCGTCGCCGCCTTCGCCGCCGCCTCCTCTCAAGCCGACTCCTACTTCGGCGACGGCTCCTTTTTCTCAGCCGTCGGCAAAGGCGTATGTTGCAAAACAGGATAATACGATCACTTTAGAGTTTCAGAGGCAGAAGGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAGGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCCAATGGGAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTGCTGACAGAGTATGCAACTGGGTCAAACTTCGTTGATCAAGTAAAGATCCTCCTTTCAAATTTTGGGATAGTTGATCTCGATTGACACGATGAACAAGGTCGATGTTTAATTTTTAATGTATCTACATCTTGTAATTCATTTCATAGTGTTCTTGAGATTTGTTGTTTGATACACAAATTGCCATTCAAGTTTGTGCTCCTTGCAATGCTTACTGTTCTGTTATATATAAAGTTCTTTCTTAAGGATAGTCATAGCTGACCTAACTGAACTATTCTCACCAAC

Coding sequence (CDS)

ATGTCGGGGGCCTGTTCATTCCCCTTTGCCAAAATCAAAATCCCCACCGTTTCCTCGTCGTCGGCGGCCGTTTCTCCGTCGGCTTCGGCTGTCAGTTCCACTTCTTCATCGTCCGCTCACAGTTCCATCAGATTCTCCTCCTCCAAACCTTTTGTCTTCACCATTCGGAGCTCTCAGACCGACGGCCCTATCAGGAGACCGGCGGCTCCTTCTCTGAGAGAGCCGTCGCCGCCTTCGCCGCCGCCTCCTCTCAAGCCGACTCCTACTTCGGCGACGGCTCCTTTTTCTCAGCCGTCGGCAAAGGCGTATGTTGCAAAACAGGATAATACGATCACTTTAGAGTTTCAGAGGCAGAAGGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAGGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAATGAAATTTCCAATGGGAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTGCTGACAGAGTATGCAACTGGGTCAAACTTCGTTGATCAAGTAAAGATCCTCCTTTCAAATTTTGGGATAGTTGATCTCGATTGA

Protein sequence

MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD

Homology

[Close]

BLAST of CmaCh04G024570 vs. ExPASy Swiss-Prot
Match: Q9FEC1 (Light-harvesting complex-like protein OHP2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP2 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-44
Identity = 108/161 (67.08%), Postives = 126/161 (78.26%), Query Frame = 0


Query: 32  SSTSSSSAHSSIRFS-SSKPFVFTIRSSQTDGPIRRPAA-PSLREPSPPSPPPPLKPTPT 91
           SS+SSS+A SS RFS ++KP VF IR SQT+GP+RRP+A P+LREP  P P     P+  
Sbjct: 17  SSSSSSTASSSFRFSTTTKPCVFIIRCSQTEGPLRRPSAPPTLREPQKPVP-----PSQP 76

Query: 92  SATAPFSQPSAKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEI 151
           S++ P S P  KA      +  T+EFQRQKAKELQEYFKQKKL+ A QGPFFGF  KNEI
Sbjct: 77  SSSPPPSPPPQKAVAVDGKSVTTVEFQRQKAKELQEYFKQKKLEAAGQGPFFGFQPKNEI 136

Query: 152 SNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD 191
           SNGRWAMFGFAVG+LTEYATGS+ VDQVKILLSNFGI+DL+
Sbjct: 137 SNGRWAMFGFAVGMLTEYATGSDLVDQVKILLSNFGILDLE 172

[Close]

BLAST of CmaCh04G024570 vs. ExPASy TrEMBL
Match: A0A6J1JS47 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487322 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.4e-91
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPPPPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQRQKA 120
           DGPIRRPAAPSLREPSPPSPPPPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQRQKA
Sbjct: 61  DGPIRRPAAPSLREPSPPSPPPPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQRQKA 120

Query: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180
           KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL
Sbjct: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180

Query: 181 LSNFGIVDLD 191
           LSNFGIVDLD
Sbjct: 181 LSNFGIVDLD 190

[Close]

BLAST of CmaCh04G024570 vs. ExPASy TrEMBL
Match: A0A6J1HG91 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464005 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.5e-88
Identity = 184/190 (96.84%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACSFPFAKIKIPTVSSSSAAVSPSASA SSTSSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPPPPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQRQKA 120
           DGPIRRPAAPSLREPSPPSPPPPLKP P+SATAP +QPS KAYVAKQDNTITLEFQRQKA
Sbjct: 61  DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKA 120

Query: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180
           KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL
Sbjct: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180

Query: 181 LSNFGIVDLD 191
           LSNFGIVDLD
Sbjct: 181 LSNFGIVDLD 190

[Close]

BLAST of CmaCh04G024570 vs. ExPASy TrEMBL
Match: A0A6J1FIC8 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445596 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.0e-74
Identity = 164/193 (84.97%), Postives = 169/193 (87.56%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACS PFAKIKIP  SSS A  SPSASA SS SSSSAHSSIRFSS+KPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPATSSSPATASPSASATSSASSSSAHSSIRFSSTKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPP---PPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQR 120
           +GP+RRPAAPSLREPSPPSPP   PPLKPTP     P   P + AY AK DN ITLEFQR
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTP----PPSQTPPSPAYAAKLDNVITLEFQR 120

Query: 121 QKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV 180
           QKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV
Sbjct: 121 QKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV 180

Query: 181 KILLSNFGIVDLD 191
           KILLSNFGIVDL+
Sbjct: 181 KILLSNFGIVDLE 189

[Close]

BLAST of CmaCh04G024570 vs. ExPASy TrEMBL
Match: A0A6J1K1U3 (light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489352 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.5e-74
Identity = 164/193 (84.97%), Postives = 169/193 (87.56%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACS PFAKIKIP  SSS A  SPSASA SS SSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPAASSSPATASPSASATSSASSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPP---PPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQR 120
           +GP+RRPAAPSLREPSPPSPP   PPLKPTP S+      P + AY AK DN ITLEFQR
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTPPSS----QTPPSPAYAAKLDNVITLEFQR 120

Query: 121 QKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV 180
           QKAKELQEYFKQKKLDE DQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV
Sbjct: 121 QKAKELQEYFKQKKLDEDDQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV 180

Query: 181 KILLSNFGIVDLD 191
           KILLSNFGIVDL+
Sbjct: 181 KILLSNFGIVDLE 189

[Close]

BLAST of CmaCh04G024570 vs. ExPASy TrEMBL
Match: A0A1S3B3J8 (proline-rich receptor-like protein kinase PERK14 OS=Cucumis melo OX=3656 GN=LOC103485601 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 9.1e-67
Identity = 155/198 (78.28%), Postives = 168/198 (84.85%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSA----AVSPSASAVSSTSSSSA-HSSIRFSSSKPFVFTI 60
           MSGACS PFA IKIP+ SSS A    A SPSASA SS SSSS+ HSS+RF SSKPF+FTI
Sbjct: 1   MSGACSIPFANIKIPSTSSSPAATASAASPSASASSSASSSSSLHSSLRFHSSKPFLFTI 60

Query: 61  RSSQTDGPIRRPAAPSLREPSPPSPP---PPLKPTPTSATAPFSQPSAKAYVAKQDNTIT 120
           RSSQT+GP+RRP+APSLR+PSPPSPP   PPLKP+P S + P       + V KQDN IT
Sbjct: 61  RSSQTEGPLRRPSAPSLRDPSPPSPPSPTPPLKPSPPSQSPP-------SPVLKQDNVIT 120

Query: 121 LEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSN 180
           LEFQR KAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSN
Sbjct: 121 LEFQRLKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSN 180

Query: 181 FVDQVKILLSNFGIVDLD 191
           FVDQVKILLSNFGI+DL+
Sbjct: 181 FVDQVKILLSNFGIIDLE 191

[Close]

BLAST of CmaCh04G024570 vs. NCBI nr
Match: XP_022990469.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 345.5 bits (885), Expect = 2.9e-91
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPPPPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQRQKA 120
           DGPIRRPAAPSLREPSPPSPPPPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQRQKA
Sbjct: 61  DGPIRRPAAPSLREPSPPSPPPPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQRQKA 120

Query: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180
           KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL
Sbjct: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180

Query: 181 LSNFGIVDLD 191
           LSNFGIVDLD
Sbjct: 181 LSNFGIVDLD 190

[Close]

BLAST of CmaCh04G024570 vs. NCBI nr
Match: XP_022963822.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 334.7 bits (857), Expect = 5.1e-88
Identity = 184/190 (96.84%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACSFPFAKIKIPTVSSSSAAVSPSASA SSTSSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPPPPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQRQKA 120
           DGPIRRPAAPSLREPSPPSPPPPLKP P+SATAP +QPS KAYVAKQDNTITLEFQRQKA
Sbjct: 61  DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQPSGKAYVAKQDNTITLEFQRQKA 120

Query: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180
           KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL
Sbjct: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180

Query: 181 LSNFGIVDLD 191
           LSNFGIVDLD
Sbjct: 181 LSNFGIVDLD 190

[Close]

BLAST of CmaCh04G024570 vs. NCBI nr
Match: KAG7032876.1 (Light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 331.6 bits (849), Expect = 4.3e-87
Identity = 183/190 (96.32%), Postives = 185/190 (97.37%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACSFPFAKIKIPTVSSSSAAVSPSASA SSTSSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPPPPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQRQKA 120
           DGPIRRPAAPSLREPSPPSPPPPLKP P+SATAP +Q S KAYVAKQDNTITLEFQRQKA
Sbjct: 61  DGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSGKAYVAKQDNTITLEFQRQKA 120

Query: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180
           KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL
Sbjct: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180

Query: 181 LSNFGIVDLD 191
           LSNFGIVDLD
Sbjct: 181 LSNFGIVDLD 190

[Close]

BLAST of CmaCh04G024570 vs. NCBI nr
Match: XP_023535438.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 306.6 bits (784), Expect = 1.5e-79
Identity = 174/190 (91.58%), Postives = 176/190 (92.63%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACSFPFAKIKIPTVSSSSAAVSPSASA SSTSSSSAH+SIRFSSSKPFVFTIR SQT
Sbjct: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHTSIRFSSSKPFVFTIRCSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPPPPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQRQKA 120
           DGPIRRPAAPSLREPS     PPLKPTP       +QPSAKAYVAKQDNTITLEFQRQKA
Sbjct: 61  DGPIRRPAAPSLREPS-----PPLKPTPV------AQPSAKAYVAKQDNTITLEFQRQKA 120

Query: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 180
           KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL
Sbjct: 121 KELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKIL 179

Query: 181 LSNFGIVDLD 191
           LSNFGIVDLD
Sbjct: 181 LSNFGIVDLD 179

[Close]

BLAST of CmaCh04G024570 vs. NCBI nr
Match: XP_023551626.1 (light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.7 bits (740), Expect = 1.9e-74
Identity = 165/193 (85.49%), Postives = 169/193 (87.56%), Query Frame = 0


Query: 1   MSGACSFPFAKIKIPTVSSSSAAVSPSASAVSSTSSSSAHSSIRFSSSKPFVFTIRSSQT 60
           MSGACS PFAKIKIP  SSS A  SPSASA SS SSSSAHSSIRFSSSKPFVFTIRSSQT
Sbjct: 1   MSGACSIPFAKIKIPATSSSPATASPSASATSSASSSSAHSSIRFSSSKPFVFTIRSSQT 60

Query: 61  DGPIRRPAAPSLREPSPPSPP---PPLKPTPTSATAPFSQPSAKAYVAKQDNTITLEFQR 120
           +GP+RRPAAPSLREPSPPSPP   PPLKPTP     P   P + AY AK DN ITLEFQR
Sbjct: 61  EGPLRRPAAPSLREPSPPSPPSPTPPLKPTP----PPSQTPPSPAYAAKLDNVITLEFQR 120

Query: 121 QKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV 180
           QKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV
Sbjct: 121 QKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQV 180

Query: 181 KILLSNFGIVDLD 191
           KILLSNFGIVDL+
Sbjct: 181 KILLSNFGIVDLE 189

[Close]

BLAST of CmaCh04G024570 vs. TAIR 10
Match: AT1G34000.1 (one-helix protein 2 )

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-45
Identity = 108/161 (67.08%), Postives = 126/161 (78.26%), Query Frame = 0


Query: 32  SSTSSSSAHSSIRFS-SSKPFVFTIRSSQTDGPIRRPAA-PSLREPSPPSPPPPLKPTPT 91
           SS+SSS+A SS RFS ++KP VF IR SQT+GP+RRP+A P+LREP  P P     P+  
Sbjct: 17  SSSSSSTASSSFRFSTTTKPCVFIIRCSQTEGPLRRPSAPPTLREPQKPVP-----PSQP 76

Query: 92  SATAPFSQPSAKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEI 151
           S++ P S P  KA      +  T+EFQRQKAKELQEYFKQKKL+ A QGPFFGF  KNEI
Sbjct: 77  SSSPPPSPPPQKAVAVDGKSVTTVEFQRQKAKELQEYFKQKKLEAAGQGPFFGFQPKNEI 136

Query: 152 SNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD 191
           SNGRWAMFGFAVG+LTEYATGS+ VDQVKILLSNFGI+DL+
Sbjct: 137 SNGRWAMFGFAVGMLTEYATGSDLVDQVKILLSNFGILDLE 172

The following BLAST results are available for this feature:

BLAST of CmaCh04G024570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FEC1	1.6e-44	67.08	Light-harvesting complex-like protein OHP2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CmaCh04G024570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JS47	1.4e-91	100.00	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1HG91	2.5e-88	96.84	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata ...	[more]
A0A6J1FIC8	2.0e-74	84.97	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita moschata ...	[more]
A0A6J1K1U3	4.5e-74	84.97	light-harvesting complex-like protein OHP2, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A1S3B3J8	9.1e-67	78.28	proline-rich receptor-like protein kinase PERK14 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of CmaCh04G024570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990469.1	2.9e-91	100.00	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita maxima]	[more]
XP_022963822.1	5.1e-88	96.84	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita moschata]	[more]
KAG7032876.1	4.3e-87	96.32	Light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita argyrosperm...	[more]
XP_023535438.1	1.5e-79	91.58	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita pepo subsp....	[more]
XP_023551626.1	1.9e-74	85.49	light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita pepo subsp....	[more]

BLAST of CmaCh04G024570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34000.1	1.1e-45	67.08	one-helix protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 89..183 e-value: 2.2E-5 score: 26.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..97
None	No IPR available	PANTHER	PTHR14154:SF83	MYB-LIKE PROTEIN U	coord: 1..189
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..189
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 136..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G024570.1	CmaCh04G024570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006850	mitochondrial pyruvate transmembrane transport
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0050833	pyruvate transmembrane transporter activity