CmaCh04G024400 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G024400
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr04: 16789187 .. 16789426 (+)
RNA-Seq Expression	CmaCh04G024400
Synteny	CmaCh04G024400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCTTCAATGGCTGCTCTTGTTTTGGCCATTTCAGCAGCATCTCTCATTGTCCACTCTTCTCCCATCAAAAACCTTCATTGTTATTCACTTCTGTTTCTTCATCACAAAAGTTCGGTTTCGTCATCATCATGTGAAACGTTCTCATCGTTGCCATCGTCGTCGTCCATCCGTCAAGTACCATGGGCTCCTAACCTCCCACAGTCGCCGCCGCCCCGTTCTAGATATATTATATGA

mRNA sequence

ATGAAGCCTTCAATGGCTGCTCTTGTTTTGGCCATTTCAGCAGCATCTCTCATTGTCCACTCTTCTCCCATCAAAAACCTTCATTGTTATTCACTTCTGTTTCTTCATCACAAAAGTTCGGTTTCGTCATCATCATGTGAAACGTTCTCATCGTTGCCATCGTCGTCGTCCATCCGTCAAGTACCATGGGCTCCTAACCTCCCACAGTCGCCGCCGCCCCGTTCTAGATATATTATATGA

Coding sequence (CDS)

ATGAAGCCTTCAATGGCTGCTCTTGTTTTGGCCATTTCAGCAGCATCTCTCATTGTCCACTCTTCTCCCATCAAAAACCTTCATTGTTATTCACTTCTGTTTCTTCATCACAAAAGTTCGGTTTCGTCATCATCATGTGAAACGTTCTCATCGTTGCCATCGTCGTCGTCCATCCGTCAAGTACCATGGGCTCCTAACCTCCCACAGTCGCCGCCGCCCCGTTCTAGATATATTATATGA

Protein sequence

MKPSMAALVLAISAASLIVHSSPIKNLHCYSLLFLHHKSSVSSSSCETFSSLPSSSSIRQVPWAPNLPQSPPPRSRYII

Homology

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BLAST of CmaCh04G024400 vs. NCBI nr
Match: KAG6602174.1 (hypothetical protein SDJN03_07407, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.5 bits (319), Expect = 5.2e-26
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 0


Query: 1  MKPSMAALVLAISAASLIVHSSPIKNLHCYSLLFLHHKSSVSSSSCETFSSLPSSSSIRQ 60
          MKPSMAALVLAI AASLIVHSSPIKNLHCYS LFLHHKS+VSSSS ETFSSLPSSSSIRQ
Sbjct: 1  MKPSMAALVLAILAASLIVHSSPIKNLHCYSNLFLHHKSTVSSSSSETFSSLPSSSSIRQ 60

Query: 61 VPWAPNLPQSPPP 74
          VPWAPNLPQSPPP
Sbjct: 61 VPWAPNLPQSPPP 73

The following BLAST results are available for this feature:

BLAST of CmaCh04G024400 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G024400 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G024400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602174.1	5.2e-26	94.52	hypothetical protein SDJN03_07407, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh04G024400 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G024400.1	CmaCh04G024400.1	mRNA