CmaCh04G024370 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G024370
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 16782217 .. 16783967 (+)
RNA-Seq ExpressionCmaCh04G024370
SyntenyCmaCh04G024370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATCTCTAATAATGGCCTCTCACCTTTTATCTCTTCTTCTCATTGCTTCTCTCTCTTTACATCTCCCATCACAATTGGCTGCTGCTGCACGTTACAACATTCACCCATATCAATACCAACTTCATCCGCCGTCTTCGCCGCCGCCTCCGCCTGAGAATCTCTCCTCTCCACCGGCACCCAAGAAGCAATACAAATGGTGGAGGTCACTGCTGCAGAGGCGACCGCCACATAAGATGCCATGGCCAATAAAGGCCACCCGTAAATCGCCTCCGCCGCCTTTCTAAAGCACCGCTAATGTTAGCATCATTAGCTTAATTGTTTTGGAATTGAAATGCATTTTCCGATGGTTCTTATGAATTAAGAGAGAGAGAGAAGGATCTATTATTGTCGAGCTGCCCACAAGTCAATAATATTGGCGGCTCTTATATTTTCTAGATTATGATAACTATGAGTATATACTATTACTCATACTAGTTGTGGGGTTTGAACCCACTTGCACACCACAAGATCGCAAGTCTTGTATGTCACCTTCTTCTATCATTAGACCGTCTATCGATGGTGGAGTTCGAACCTACACGCACTTATTTGCAAAAGATCTTAAGTTTTTTTTCTTAACCAGTCGGGCAAACCAACTAATTTACTTTATCGAAATTAAATTAAGTAAACTTAATTAAATTAGTTAATTAAATTTAAGTATGAATAACACTATAATATACCCACTAGTTTTTTTTTTTTAATGTAACCAATTAAGATTATGAAAAAAAAAAATTGTAAATTAAAAGTATGTCAAATTACACATTAAAATTTAAAAAAAAAATTATATCCATAAATTTAGACGGTTGTATCACTTAAAATCTTTGTAAAATCATTGACATAATTTTTTTTTTTATTCAATACTCTAATAATGTTTATATATTTCTACTTGAAAATATATTTTATCGTAAACGTGTTCAATAAAATAATTTTCGTATAAGTAGTTGAATTAAATAAACTTATGATCAAGTCAATCGATGTCTTAATTAATAAAAATTAATTGGCTTAATTAGTTGATTTGACCTTCCATTTGAAATAACATTTTAATACTTAGAAGAAGTCGTTATTCTATTCATAACCCACCTTTTTGGAGCTCTAACGTCTTCGCTGACACACTACTTAGTAACTCAAACCTACTGGTAGTAGATATCATATGTTTTGACTTGTTATGTATCATCGTCAGTCTCAGAGTTTTAAAATGTGTCTATCACATTGAATAGTATTTACTAAAAAATGAAGAGATTTTAAGTATATAAGTCAAGAAACAATATTTATATTAGCATGAAATCTTTTTGATCGAATCAACTGAACATTAAACGTTCAAACGTTCAAATGTTATCGTCTATGATAATAGACAAAGGAAAGTGTAGAGAAACTTAGGTTATTGTCTGAGCTCGAGGTTGGTGTGGTACGGCACTATATAAAGTCTATGAAAACACCATTAAAGTACAACACACCCAAACATGAAGCCTTCAATGGCTTCTCTTGTTTTGACCATTTTAGCCGCATCTCTCATGGTCCAATCTTTTCCCATAAAAAACCTTCATTATTATTCACTGTCATCTCTTCATCACAAAAATACTCTTCCGCCATTGCCATTGCCATCGTCAAGAGTAACGTCGTCATCGTTGCTATCGTCACGGACCATCCTTCAAGATCCATGGTCTCCCATATACCTCCCACAGTCGCCCCCACCTCCGTTCTAGACATATGA

mRNA sequence

ATGAGATCTCTAATAATGGCCTCTCACCTTTTATCTCTTCTTCTCATTGCTTCTCTCTCTTTACATCTCCCATCACAATTGGCTGCTGCTGCACGTTACAACATTCACCCATATCAATACCAACTTCATCCGCCGTCTTCGCCGCCGCCTCCGCCTGAGAATCTCTCCTCTCCACCGGCACCCAAGAAGCAATACAAATGGTGGAGGTCACTGCTGCAGAGGCGACCGCCACATAAGATGCCATGGCCAATAAAGGCCACCCATTATGATAACTATGAGTATATACTATTACTCATACTAGTTGTGGGGTTTGAACCCACTTGCACACCACAAGATCGCAAGTCTTGTATGTCACCTTCTTCTATCATTAGACCGTCTATCGATGGTGGAGTTCGAACCTACACGCACTTATTTGCAAAAGATCTTAACCGCATCTCTCATGGTCCAATCTTTTCCCATAAAAAACCTTCATTATTATTCACTGTCATCTCTTCATCACAAAAATACTCTTCCGCCATTGCCATTGCCATCGTCAAGAGTAACGTCGTCATCGTTGCTATCGTCACGGACCATCCTTCAAGATCCATGGTCTCCCATATACCTCCCACAGTCGCCCCCACCTCCGTTCTAGACATATGA

Coding sequence (CDS)

ATGAGATCTCTAATAATGGCCTCTCACCTTTTATCTCTTCTTCTCATTGCTTCTCTCTCTTTACATCTCCCATCACAATTGGCTGCTGCTGCACGTTACAACATTCACCCATATCAATACCAACTTCATCCGCCGTCTTCGCCGCCGCCTCCGCCTGAGAATCTCTCCTCTCCACCGGCACCCAAGAAGCAATACAAATGGTGGAGGTCACTGCTGCAGAGGCGACCGCCACATAAGATGCCATGGCCAATAAAGGCCACCCATTATGATAACTATGAGTATATACTATTACTCATACTAGTTGTGGGGTTTGAACCCACTTGCACACCACAAGATCGCAAGTCTTGTATGTCACCTTCTTCTATCATTAGACCGTCTATCGATGGTGGAGTTCGAACCTACACGCACTTATTTGCAAAAGATCTTAACCGCATCTCTCATGGTCCAATCTTTTCCCATAAAAAACCTTCATTATTATTCACTGTCATCTCTTCATCACAAAAATACTCTTCCGCCATTGCCATTGCCATCGTCAAGAGTAACGTCGTCATCGTTGCTATCGTCACGGACCATCCTTCAAGATCCATGGTCTCCCATATACCTCCCACAGTCGCCCCCACCTCCGTTCTAGACATATGA

Protein sequence

MRSLIMASHLLSLLLIASLSLHLPSQLAAAARYNIHPYQYQLHPPSSPPPPPENLSSPPAPKKQYKWWRSLLQRRPPHKMPWPIKATHYDNYEYILLLILVVGFEPTCTPQDRKSCMSPSSIIRPSIDGGVRTYTHLFAKDLNRISHGPIFSHKKPSLLFTVISSSQKYSSAIAIAIVKSNVVIVAIVTDHPSRSMVSHIPPTVAPTSVLDI
Homology
[Close]
BLAST of CmaCh04G024370 vs. NCBI nr
Match: KAG6602171.1 (hypothetical protein SDJN03_07404, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 3.8e-31
Identity = 77/87 (88.51%), Postives = 80/87 (91.95%), Query Frame = 0 

Query: 1  MRSLIMASHLLSLLLIASLSLHLPSQLAAAARYNIHPYQYQLHPPSSPPPPPENLSSPPA 60
          M SL++ASHLLS LLIA LSLHLPSQLAAAARYNIHPYQYQL PPSSPPPPPENLSSPP 
Sbjct: 1  MGSLLLASHLLS-LLIAFLSLHLPSQLAAAARYNIHPYQYQLPPPSSPPPPPENLSSPPP 60

Query: 61 PKKQYKWWRSLLQRRPPHKMPWPIKAT 88
          PKKQYKWWRSLLQRRP  K+PWPIKAT
Sbjct: 61 PKKQYKWWRSLLQRRPIPKLPWPIKAT 86

[Close]
BLAST of CmaCh04G024370 vs. NCBI nr
Match: KAG6602173.1 (hypothetical protein SDJN03_07406, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.7 bits (291), Expect = 2.4e-22
Identity = 66/87 (75.86%), Postives = 70/87 (80.46%), Query Frame = 0 

Query: 1  MRSLIMASHLLSLLLIASLSLHLPSQLAAAARYNIHPYQYQLHPPSSPPPPPENLSSPPA 60
          M SL++ASHLLSLL+   LSLHLPSQLAAAA YNIHPYQYQ  PPSSPPPPPE LSSPP 
Sbjct: 1  MGSLLLASHLLSLLIAFLLSLHLPSQLAAAAHYNIHPYQYQPPPPSSPPPPPEKLSSPPP 60

Query: 61 PKKQYKWWRSLLQRRPPHKMPWPIKAT 88
          PK QYK  RSLLQRR P   PWP +AT
Sbjct: 61 PKTQYK-LRSLLQRRMPRIRPWPRRAT 86

The following BLAST results are available for this feature:
BLAST of CmaCh04G024370 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G024370 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G024370 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602171.13.8e-3188.51hypothetical protein SDJN03_07404, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602173.12.4e-2275.86hypothetical protein SDJN03_07406, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh04G024370 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G024370.1CmaCh04G024370.1mRNA