CmaCh04G023970 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G023970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr04: 16594449 .. 16596722 (+)
RNA-Seq Expression	CmaCh04G023970
Synteny	CmaCh04G023970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCAGGGTTAACCCGGAAATCCCAGTTCTAAATCACCTCCATCACACCCTTCAAACCACCCTGCCACTCGAGAACGTGGACACCGCCGCCGTGAGGCCACCACAGAAGGTTGGTAGTGCAATTTCGACAAGGAGAAACCAGGTGAAGATAATGATATACGAGTCAATTGTTGGGTTGGTTACATCGTGACGCACCAAATTGTCGACACAACAACTACGAAATTTGATTTAAAATATAAATTTAGTTGTGGAATATATTTTATCTTATTCTTAATATCTGACTAGTTTATTTTCTCTAAGAGTGAGTTGATGTCTTATATCTTTTTCAAAGTTGTGAATATTAATGAAGATCAGACTTTCAATTTCACTTATGTTTCTCATTCTTAACATGCTGTCTAATGTTCTTCTGTCATTTTTCTATTTTTTTTCTTTTAGTTTAAATTTTATGGAGATTAAGCATAATTTTCAATAATTAAAGAAATTAATATTTCCTAAATTAATAAGCTAATTTTATACTTATCCCCACCACCTTTTTTTTTTTTTTTTTTACATGCAGTTAGCTTGTCGGACACGAAAGGAATATAAAATTTAGACACTATATTTTTAAAAAAAATAATAAAATAAAAACGCGTTTTCATATCAGTAAAATTGTAGATGATGTGACTGAATAACTTCATATTGTTTAATACAATAAAAATTAAATAACAAAATCCCCACGACCATTAAAAAAAAATATATAATTTAAAAAAAGGTAGAATTTTATTCATATAATTTAATAAAAAATTTAATCCACTTAAAACATATGTTTATCAAATGGTTCCAAAATTTGAGATAAATGAAAAAAAAAAAAAAAAAAAAAAAAGTCATTTCACTTTTGACTGATCTGTATAGTAAAGTATCGAGATCTTACCCTAAGTAATGGTTAATAAATATTTAGTTGACTTGAGTTTACTGGGTCCTCATTTTTAATTCATTTTCTTTTCCGTATGCTTTACTTTAATGCGGTATGACATCATTGCAATCAAATCATCATGTGGGCTATGGTCCACGTAATTATTAAATTATTCAAAAAAAAAAAAAAAATCTACGTAGGAATTTAATTAATACCATAACATAGGATGGGATTCGACAGAAGGTTCGAGGAAGCTACCAACAACACTTTCCCCACCAAATTTATGCGAAATTGATTTTAAAATGTTAGAAATACAAATGTAATTCAAATTTATGCAAAATGTGCATTCATTTCCATTATTTCTACTTATTATTTATTTTCTATTGAGAAAATAAATAAAATTTTAAGAATTGAAGGAATTGGAAAGCTGCTGGAAGCTTCATATACGCTGATTTTCACAAAATTTTACCCAAATAAATAAATAAAGAACTATTAGTATTCTAAGCTTTAAACTTTATCTACTCGATCATTTTCATTTAGATATGTTTTGATTCTTTAAGTTGGAAATTTTATTAGAATTACATCTTCTAAGTGATTTCGTAACCTTAACGTCCTAATTTTTGTACTTTCTTTTTTACTATATTATATTATAGGCATTTTGTCGGGTTTTCGTCCCTTTACCTCCTTCCTAACTTTTCAGAGAGACCCTTTATGACTATAAACAATAGGGGTTGTTCTCACTTTGTTAACTTGACTACTTAATATTCAAATAGTATTATCCTGACTAATTAAGGAAAGATTAAAGGGAAGATTATGAATTTATAAGTAAAAAAATAATGTGAGGTTTTAAATTTTTTTTTTTTTTTTTATAGAGAAATTTTCTATAATTTAGTGAAAAAAAAATAATAAATAAATATGAACAGTAACATAAAAATGATTATAAAAGCAAAGTGTCTATTTGAATTGAACTCAGCTACAAACCCAGTTTCAGAAACAACCGACCTAAAATACCCACAAGCTGTACGATTCAGAGTCTCGCCGGACCACAATCGGGTGATACCCGACCGGCCACCACCCGGCCTCCGTCAATGCCACTACATTGCTCCAATCGATCCGGTGAAATTAGAAATTTCAACGTTGACCAAGCCTGCAATCCCGTATCAAGTCGGCCAATCCAGAGACGGCGGTGATGTCGACCAGGCCTGTATTCGGAAACAAAGCCGGCGGCGGAAAAGCGAAATCTGTGCTTCCGTTGATCCCAGAGACGGCGGTGACGTCGACCAATTCTCACGGGTACAGAGCCGGCGTCGGAAAAGGGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAA

mRNA sequence

ATGGCAACCAGGGTTAACCCGGAAATCCCAGTTCTAAATCACCTCCATCACACCCTTCAAACCACCCTGCCACTCGAGAACGTGGACACCGCCGCCGTGAGGCCACCACAGAAGGTTGGTAGTGCAATTTCGACAAGGAGAAACCAGGTGAAGATAATGATATACGAGTCAATTGTTGGAGTCTCGCCGGACCACAATCGGGTGATACCCGACCGGCCACCACCCGGCCTCCGTCAATGCCACTACATTGCTCCAATCGATCCGGTGAAATTAGAAATTTCAACGTTGACCAAGCCTGCAATCCCGTATCAAGTCGGCCAATCCAGAGACGGCGGTGATGTCGACCAGGCCTGTATTCGGAAACAAAGCCGGCGGCGGAAAAGCGAAATCTGTGCTTCCGTTGATCCCAGAGACGGCGGTGACGTCGACCAATTCTCACGGGTACAGAGCCGGCGTCGGAAAAGGGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAA

Coding sequence (CDS)

ATGGCAACCAGGGTTAACCCGGAAATCCCAGTTCTAAATCACCTCCATCACACCCTTCAAACCACCCTGCCACTCGAGAACGTGGACACCGCCGCCGTGAGGCCACCACAGAAGGTTGGTAGTGCAATTTCGACAAGGAGAAACCAGGTGAAGATAATGATATACGAGTCAATTGTTGGAGTCTCGCCGGACCACAATCGGGTGATACCCGACCGGCCACCACCCGGCCTCCGTCAATGCCACTACATTGCTCCAATCGATCCGGTGAAATTAGAAATTTCAACGTTGACCAAGCCTGCAATCCCGTATCAAGTCGGCCAATCCAGAGACGGCGGTGATGTCGACCAGGCCTGTATTCGGAAACAAAGCCGGCGGCGGAAAAGCGAAATCTGTGCTTCCGTTGATCCCAGAGACGGCGGTGACGTCGACCAATTCTCACGGGTACAGAGCCGGCGTCGGAAAAGGGAAATCTGTAATTCCGAAGAAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAA

Protein sequence

MATRVNPEIPVLNHLHHTLQTTLPLENVDTAAVRPPQKVGSAISTRRNQVKIMIYESIVGVSPDHNRVIPDRPPPGLRQCHYIAPIDPVKLEISTLTKPAIPYQVGQSRDGGDVDQACIRKQSRRRKSEICASVDPRDGGDVDQFSRVQSRRRKREICNSEEEEVSEDDDVPLH

Homology

[Close]

BLAST of CmaCh04G023970 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 5.9e-06
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 61  VSPDHNRVIPDRPP-----PGLRQCHYIAPIDPVKLEISTLTKPAIPYQVGQSR 110
           VSPD NRV+P++ P     P +   H +APIDP K EISTLTKPAIPYQVG  +
Sbjct: 5   VSPDDNRVLPEQNPTAHYLPSINANH-LAPIDPAKSEISTLTKPAIPYQVGDGK 57

The following BLAST results are available for this feature:

BLAST of CmaCh04G023970 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G023970 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G023970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602131.1	5.9e-06	59.26	hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh04G023970 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G023970.1	CmaCh04G023970.1	mRNA