CmaCh04G023950 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G023950
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 16589337 .. 16590090 (+)
RNA-Seq ExpressionCmaCh04G023950
SyntenyCmaCh04G023950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATTCAGAGTCTCGCTGGACCACAATCGGGTCATACCCGACCCACATCTGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCGCCGAAATCTGTGCTTCCGTTGATTCCGGCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTGATCGGAAACAAAGACGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTGATCCCAGCGATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCATCGGAAAAGGGAAATCTGTAATTCCGAAGGAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCTTTAAGAACTTCCTCTTATCGCTGTTCCATCGCCCGCCGGAAACCCAGAACCGCCCCAAACCCATTACCGATGACCAGTAAAAATCTTGACACTTACACGTTTGTATTCGGATTTTTATCATAATCTTCTTATTGTTCACGTTTTTCTCTTTTCTGAGTGAGCCTCTGTGTCCTCCTCTGTTTTTCTCTATCATAAAACAGAGGATTTTATAATGGCTTGTAGTGTAATCCACTTGTGTTTTGTTCTTATTTCTATGTCGTTTCGAAATTCTCTTGGTCGTGTTTTTTAATAAAAGAACTGTCTGATTCCGGTTGGTATTGGCCGTTGTTCCATTGAATCGGAAACAGAGACTCCGCAGATCCGCCGGAGAAGAAGGTTCTCGCCGGCGTCTGA

mRNA sequence

ATGCGATTCAGAGTCTCGCTGGACCACAATCGGGTCATACCCGACCCACATCTGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCGCCGAAATCTGTGCTTCCGTTGATTCCGGCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTGATCGGAAACAAAGACGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTGATCCCAGCGATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCATCGGAAAAGGGAAATCTGTAATTCCGAAGGAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCTTTAAGAACTTCCTCTTATCGCTGTTCCATCGCCCGCCGGAAACCCAGAACCGCCCCAAACCCATTACCGATGACCAAGACTCCGCAGATCCGCCGGAGAAGAAGGTTCTCGCCGGCGTCTGA

Coding sequence (CDS)

ATGCGATTCAGAGTCTCGCTGGACCACAATCGGGTCATACCCGACCCACATCTGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCGCCGAAATCTGTGCTTCCGTTGATTCCGGCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTGATCGGAAACAAAGACGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTGATCCCAGCGATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCATCGGAAAAGGGAAATCTGTAATTCCGAAGGAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCTTTAAGAACTTCCTCTTATCGCTGTTCCATCGCCCGCCGGAAACCCAGAACCGCCCCAAACCCATTACCGATGACCAAGACTCCGCAGATCCGCCGGAGAAGAAGGTTCTCGCCGGCGTCTGA

Protein sequence

MRFRVSLDHNRVIPDPHLTPHHPPSLNAHHLAPIDPPKSVLPLIPANPETAVMSTRPVIGNKDGDGKAKSVLPLIPAIPETAVTSTGTLTNSHGYRVGIGKGKSVIPKERKLVKTMMYHCFKNFLLSLFHRPPETQNRPKPITDDQDSADPPEKKVLAGV
Homology
BLAST of CmaCh04G023950 vs. ExPASy TrEMBL
Match: A0A0A0KDQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-07
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 96  RVGIGKGKSVIPKERKLVKTMMYHCFKNFLLSLFHRPPETQNRPKPITDD 146
           RVG  K KSVIPK+RKLVKTM+YH  K+FL+SLF    +  NRPKPI+ D
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPISKD 81

BLAST of CmaCh04G023950 vs. ExPASy TrEMBL
Match: A0A6J1CJW3 (uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011963 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.4e-05
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 78  IPETAVTSTGTLTNSHGYRVGIGKGKSVIPKERKLVKTMMYHCFKNFLLSLFHRPPETQN 137
           I E AVT+ G +    G R G GK KSVIPK R LVKTM+Y+  K+F++SLF  PP    
Sbjct: 33  ISEMAVTANGAI----GSRAG-GKVKSVIPKRRILVKTMIYNFIKDFIISLFRPPPSAVP 91

Query: 138 RPKP 142
            P P
Sbjct: 93  EPPP 91

BLAST of CmaCh04G023950 vs. NCBI nr
Match: KAG6602132.1 (hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256.1 bits (653), Expect = 1.9e-64
Identity = 130/146 (89.04%), Postives = 131/146 (89.73%), Query Frame = 0

Query: 1   MRFRVSLDHNRVIPDPHLTPHHPPSLNAHHLAPIDPPKSVLPLIPANPETAVMSTRPVIG 60
           MRFRVS DHNRVIPDPH TPHHPPSLNAHHLAPIDPPKSVL LIPANPETAVMSTRPVIG
Sbjct: 1   MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVLRLIPANPETAVMSTRPVIG 60

Query: 61  NKDGDGKAKSVLPLIPAIPETAVTSTGTLTNSHGYRVGIGKGKSVIPKERKLVKTMMYHC 120
           NK GDGKAKSVLPL   I ETAVTSTGTLT+SHGYRVGIGKGKSVIPK RKLVKTMMYHC
Sbjct: 61  NKAGDGKAKSVLPL---IAETAVTSTGTLTDSHGYRVGIGKGKSVIPKRRKLVKTMMYHC 120

Query: 121 FKNFLLSLFHRPPETQNRPKPITDDQ 147
            KNFL SLF RPPET NRPKPIT  Q
Sbjct: 121 IKNFLKSLFRRPPETHNRPKPITGYQ 143

BLAST of CmaCh04G023950 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191.4 bits (485), Expect = 5.9e-45
Identity = 104/167 (62.28%), Postives = 118/167 (70.66%), Query Frame = 0

Query: 1   MRFRVSLDHNRVIPDPHLTPHHPPSLNAHHLAPIDPPK---------------------S 60
           MRFRVS D NRV+P+ + T H+ PS+NA+HLAPIDP K                     S
Sbjct: 1   MRFRVSPDDNRVLPEQNPTAHYLPSINANHLAPIDPAKSEISTLTKPAIPYQVGDGKAQS 60

Query: 61  VLPLIPANPETAVMSTRPVIGNKDGDGKAKSVLPLIPAIPETAVTSTGTLTNSHGYRVGI 120
           VL  IPANPETAV+ST P +  +  DGKA+SVLPL PA PETAVTS    TNS GYR G+
Sbjct: 61  VLTFIPANPETAVVSTMPAVPYQVADGKAQSVLPLTPATPETAVTS----TNSLGYRAGV 120

Query: 121 GKGKSVIPKERKLVKTMMYHCFKNFLLSLFHRPPETQNRPKPITDDQ 147
           GK KSVIPK+RKLVKTMMYHC KNF+ SLF RPP+T NRPKPITDDQ
Sbjct: 121 GKVKSVIPKKRKLVKTMMYHCIKNFIKSLFRRPPKTHNRPKPITDDQ 163

BLAST of CmaCh04G023950 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.4 bits (381), Expect = 6.7e-33
Identity = 87/146 (59.59%), Postives = 101/146 (69.18%), Query Frame = 0

Query: 1   MRFRVSLDHNRVIPDPHLTPHHPPSLNAHHLAPIDPPKSVLPLIPANPETAVMSTRPVIG 60
           MRFRVS D NR +P+ + T HHPPS+N +HL PIDP KS +  +          T+  I 
Sbjct: 1   MRFRVSPDDNRELPEQNPTAHHPPSVNGNHLPPIDPVKSEIATL----------TKLAIP 60

Query: 61  NKDGDGKAKSVLPLIPAIPETAVTSTGTLTNSHGYRVGIGKGKSVIPKERKLVKTMMYHC 120
            +  DGKAKSVLPLIPA P+TAVTS    TNS  YR GIGK KSVIPK+RKLVKTMMYHC
Sbjct: 61  YQICDGKAKSVLPLIPAKPDTAVTS----TNSVEYRAGIGKVKSVIPKKRKLVKTMMYHC 120

Query: 121 FKNFLLSLFHRPPET-QNRPKPITDD 146
            K+FL SLF  PP+T + RPKPI  D
Sbjct: 121 IKDFLKSLFRPPPKTHRRRPKPIIHD 132

BLAST of CmaCh04G023950 vs. NCBI nr
Match: KAE8647260.1 (hypothetical protein Csa_018328, partial [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 4.9e-07
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 96  RVGIGKGKSVIPKERKLVKTMMYHCFKNFLLSLFHRPPETQNRPKPITDD 146
           RVG  K KSVIPK+RKLVKTM+YH  K+FL+SLF    +  NRPKPI+ D
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPISKD 81

BLAST of CmaCh04G023950 vs. NCBI nr
Match: XP_022141661.1 (uncharacterized protein LOC111011963 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-04
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 78  IPETAVTSTGTLTNSHGYRVGIGKGKSVIPKERKLVKTMMYHCFKNFLLSLFHRPPETQN 137
           I E AVT+ G +    G R G GK KSVIPK R LVKTM+Y+  K+F++SLF  PP    
Sbjct: 33  ISEMAVTANGAI----GSRAG-GKVKSVIPKRRILVKTMIYNFIKDFIISLFRPPPSAVP 91

Query: 138 RPKP 142
            P P
Sbjct: 93  EPPP 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDQ72.4e-0764.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
A0A6J1CJW38.4e-0551.56uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
Match NameE-valueIdentityDescription
KAG6602132.11.9e-6489.04hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602131.15.9e-4562.28hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602134.16.7e-3359.59hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647260.14.9e-0764.00hypothetical protein Csa_018328, partial [Cucumis sativus][more]
XP_022141661.11.7e-0451.56uncharacterized protein LOC111011963 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G023950.1CmaCh04G023950.1mRNA