CmaCh04G023480 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G023480
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	selenoprotein K
Location	Cma_Chr04: 16297664 .. 16298682 (-)
RNA-Seq Expression	CmaCh04G023480
Synteny	CmaCh04G023480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAGTTGTCCGTATGATACTGTTTTTTTTTTTTTTTGTTTTGTTATCTATTTGGATTGATTTGATGTTCAAGAGATTGAAGAGATGCTAAAATTGCTTTCACATTGCACAATGACCCATTTTTGACGATTCGTATATCCGGTTGATAAACTGGGTGTTATTCTCAGGTGTTACCATTCATCTGATAGTTTCTTTGAACTATGAAATTGAATGCTTCTGTGTTCTTGATTCCTAGCATGAAATAACCAGCTATGCACTTGCATGATATCTTGTAGGCGTTGTGAAATCCCAGAGATCATTTTGGCGTCTCAAAACCATAACTGATTTCTTTTGGGCCATTGTAAACATTATCGGTGTGTTTTTTACAACCTTATTCTCGGTAAGGTGTTCTTTGTTGTCTTGTGAATAATGTTAGGTATTCAGAACCATAATCATAGGATTAAATATTAACTTTCATGCTTCTTTCTAGATGGAAAAATCTGAGGCTTATAGAAAAGGATCTGGTTCTGGCAAGAAATGGGACGGTGGTGGCCCAGGAGGTCCCGGGTCAGGGCCTTATGGTGGTCGTCCACGTGGGCCACCTCGTGGTCTAGACAACGTTCGAGGGATCGATCATAGTAAGTTCAATGCTTGTTTTAGAACTTTTTTCCTCTATTCTTTCATTCAATTTACTTACCGTTCTGTGATCTGAACTATGACAACCAGGTTCACTACCTGCCTGTGGTTCGTGTTGCGGCTAAGCTTTTGGCTGCTTCCATGGTGCATTTACACAAGGGTGTCTAGAAAATACTGTTCAATTTAAAATCGTGGGCCGTGTTGTAAATGTTGATGGAATGCTATCTGCGAATATAAATTAGTTAATTAGATAGAAAAAAGGGTTCACTGATGTGGTTTCATAAATTAGTACTCAAAAGTTAATTTTGCCAATCAAAATCTGTAGTGTTTGGATAAAACTTTAAGATGCCAAAGCATTTTTAATATATTATATTGCAATGATTTCTTGTAATAATTTTTTC

mRNA sequence

ATGTACAGTTGCGTTGTGAAATCCCAGAGATCATTTTGGCGTCTCAAAACCATAACTGATTTCTTTTGGGCCATTGTAAACATTATCGGTGTGTTTTTTACAACCTTATTCTCGATGGAAAAATCTGAGGCTTATAGAAAAGGATCTGGTTCTGGCAAGAAATGGGACGGTGGTGGCCCAGGAGGTCCCGGGTCAGGGCCTTATGGTGGTCGTCCACGTGGGCCACCTCGTGGTCTAGACAACGTTCGAGGGATCGATCATAGTTCACTACCTGCCTGTGGTTCGTGTTGCGGCTAAGCTTTTGGCTGCTTCCATGGTGCATTTACACAAGGGTGTCTAGAAAATACTGTTCAATTTAAAATCGTGGGCCGTGTTGTAAATGTTGATGGAATGCTATCTGCGAATATAAATTAGTTAATTAGATAGAAAAAAGGGTTCACTGATGTGGTTTCATAAATTAGTACTCAAAAGTTAATTTTGCCAATCAAAATCTGTAGTGTTTGGATAAAACTTTAAGATGCCAAAGCATTTTTAATATATTATATTGCAATGATTTCTTGTAATAATTTTTTC

Coding sequence (CDS)

ATGTACAGTTGCGTTGTGAAATCCCAGAGATCATTTTGGCGTCTCAAAACCATAACTGATTTCTTTTGGGCCATTGTAAACATTATCGGTGTGTTTTTTACAACCTTATTCTCGATGGAAAAATCTGAGGCTTATAGAAAAGGATCTGGTTCTGGCAAGAAATGGGACGGTGGTGGCCCAGGAGGTCCCGGGTCAGGGCCTTATGGTGGTCGTCCACGTGGGCCACCTCGTGGTCTAGACAACGTTCGAGGGATCGATCATAGTTCACTACCTGCCTGTGGTTCGTGTTGCGGCTAA

Protein sequence

MYSCVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG

Homology

[Close]

BLAST of CmaCh04G023480 vs. ExPASy TrEMBL
Match: A0A6J1HI52 (selenoprotein K-like OS=Cucurbita moschata OX=3662 GN=LOC111464545 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 5   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 64
           VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG
Sbjct: 8   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 67

Query: 65  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 99
           SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 68  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of CmaCh04G023480 vs. ExPASy TrEMBL
Match: A0A6J1JQF6 (selenoprotein K OS=Cucurbita maxima OX=3661 GN=LOC111486892 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.1e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 5   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 64
           VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG
Sbjct: 8   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 67

Query: 65  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 99
           SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 68  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of CmaCh04G023480 vs. ExPASy TrEMBL
Match: A0A0A0KDW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G040550 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.7e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 5   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 64
           VVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG
Sbjct: 8   VVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 67

Query: 65  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 99
           SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 68  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of CmaCh04G023480 vs. ExPASy TrEMBL
Match: A0A1S3BE45 (selenoprotein K OS=Cucumis melo OX=3656 GN=LOC103488629 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.7e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 5   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 64
           VVKSQRSFWRLKTITDFFWAI+NIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG
Sbjct: 8   VVKSQRSFWRLKTITDFFWAIINIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 67

Query: 65  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 99
           SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 68  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of CmaCh04G023480 vs. ExPASy TrEMBL
Match: A0A6J1JVZ4 (selenoprotein K-like OS=Cucurbita maxima OX=3661 GN=LOC111489356 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.0e-45
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 5   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 64
           VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG
Sbjct: 8   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 67

Query: 65  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 99
           SGPYGGRPRGPPR LDNVRGIDHSSLPACGSCCG
Sbjct: 68  SGPYGGRPRGPPRSLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of CmaCh04G023480 vs. NCBI nr
Match: XP_022964558.1 (selenoprotein K-like [Cucurbita moschata] >XP_022964567.1 selenoprotein K-like [Cucurbita moschata] >XP_022989819.1 selenoprotein K [Cucurbita maxima] >XP_023516420.1 selenoprotein K-like [Cucurbita pepo subsp. pepo] >KAG6602082.1 Selenoprotein K, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.5 bits (493), Expect = 4.3e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 5   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 64
           VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG
Sbjct: 8   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 67

Query: 65  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 99
           SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 68  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of CmaCh04G023480 vs. NCBI nr
Match: XP_031743925.1 (selenoprotein K isoform X2 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 5.6e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 5   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 64
           VVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG
Sbjct: 8   VVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 67

Query: 65  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 99
           SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 68  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of CmaCh04G023480 vs. NCBI nr
Match: XP_004140863.1 (selenoprotein K isoform X1 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 5.6e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 5   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 64
           VVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG
Sbjct: 8   VVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 67

Query: 65  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 99
           SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 68  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of CmaCh04G023480 vs. NCBI nr
Match: KAE8646613.1 (hypothetical protein Csa_005613 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 5.6e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 5   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 64
           VVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG
Sbjct: 56  VVKSQRSFWRLKTITDFFWAIVNVIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 115

Query: 65  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 99
           SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 116 SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 149

[Close]

BLAST of CmaCh04G023480 vs. NCBI nr
Match: XP_008445670.1 (PREDICTED: selenoprotein K [Cucumis melo])

HSP 1 Score: 194.1 bits (492), Expect = 5.6e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 5   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 64
           VVKSQRSFWRLKTITDFFWAI+NIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG
Sbjct: 8   VVKSQRSFWRLKTITDFFWAIINIIGVFFTTLFSMEKSEAYRKGSGSGKKWDGGGPGGPG 67

Query: 65  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 99
           SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG
Sbjct: 68  SGPYGGRPRGPPRGLDNVRGIDHSSLPACGSCCG 101

[Close]

BLAST of CmaCh04G023480 vs. TAIR 10
Match: AT4G08230.1 (glycine-rich protein )

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-26
Identity = 66/106 (62.26%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 5   VVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSEAYRKGSGSGKKW-----DGGG 64
           VVK++R  WRL+TI DFF +I+N+I VFF T+FSMEKS+AYRKGS   KKW      GGG
Sbjct: 8   VVKAKRPIWRLRTIKDFFLSIINLIQVFFVTMFSMEKSDAYRKGSKPNKKWGGGMGGGGG 67

Query: 65  PGGPGSGPYGGRPRGPPR-GLDNVRGI------DHSSLPACGSCCG 99
            GG   G  GGR  GPPR GLDNVRG+      DH+SLPACGSCCG
Sbjct: 68  GGGGSGGGGGGRGGGPPRGGLDNVRGLNDIRGADHNSLPACGSCCG 113

[Close]

BLAST of CmaCh04G023480 vs. TAIR 10
Match: AT4G08230.2 (glycine-rich protein )

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-13
Identity = 45/72 (62.50%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 39 MEKSEAYRKGSGSGKKW-----DGGGPGGPGSGPYGGRPRGPPR-GLDNVRGI------D 98
          MEKS+AYRKGS   KKW      GGG GG   G  GGR  GPPR GLDNVRG+      D
Sbjct: 1  MEKSDAYRKGSKPNKKWGGGMGGGGGGGGGSGGGGGGRGGGPPRGGLDNVRGLNDIRGAD 60

The following BLAST results are available for this feature:

BLAST of CmaCh04G023480 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G023480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HI52	2.1e-46	100.00	selenoprotein K-like OS=Cucurbita moschata OX=3662 GN=LOC111464545 PE=4 SV=1	[more]
A0A6J1JQF6	2.1e-46	100.00	selenoprotein K OS=Cucurbita maxima OX=3661 GN=LOC111486892 PE=4 SV=1	[more]
A0A0A0KDW6	2.7e-46	98.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G040550 PE=4 SV=1	[more]
A0A1S3BE45	2.7e-46	98.94	selenoprotein K OS=Cucumis melo OX=3656 GN=LOC103488629 PE=4 SV=1	[more]
A0A6J1JVZ4	1.0e-45	98.94	selenoprotein K-like OS=Cucurbita maxima OX=3661 GN=LOC111489356 PE=4 SV=1	[more]

BLAST of CmaCh04G023480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964558.1	4.3e-46	100.00	selenoprotein K-like [Cucurbita moschata] >XP_022964567.1 selenoprotein K-like [...	[more]
XP_031743925.1	5.6e-46	98.94	selenoprotein K isoform X2 [Cucumis sativus]	[more]
XP_004140863.1	5.6e-46	98.94	selenoprotein K isoform X1 [Cucumis sativus]	[more]
KAE8646613.1	5.6e-46	98.94	hypothetical protein Csa_005613 [Cucumis sativus]	[more]
XP_008445670.1	5.6e-46	98.94	PREDICTED: selenoprotein K [Cucumis melo]	[more]

BLAST of CmaCh04G023480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G08230.1	1.4e-26	62.26	glycine-rich protein	[more]
AT4G08230.2	2.3e-13	62.50	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024491	Selenoprotein SelK/SelG	PFAM	PF10961	SelK_SelG	coord: 5..75 e-value: 3.5E-19 score: 69.2
IPR024491	Selenoprotein SelK/SelG	PANTHER	PTHR16875	SELENOPROTEIN K	coord: 4..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G023480.1	CmaCh04G023480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0032469	endoplasmic reticulum calcium ion homeostasis
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane