CmaCh04G023260 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G023260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 16186358 .. 16187012 (-)
RNA-Seq ExpressionCmaCh04G023260
SyntenyCmaCh04G023260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGTTCTAGTTGTTCACAGTATCTAATGGCAATGGGTCAGTTTTTATTTCATTTTATTTTATTTCATTTTCTTTTCTTCTTTTGAAATCTCTTTCCTTCTTTTTTGTTTTCATGGTTTTAAAGAAATGCTGATGGGAGTTGGGTTGGGATGTTAATTGAAACACTGAACAGAGCCAATAGTTCTATAAGTTACAGTTGCCCAAATCATCCTGCCTGCCTGCCTGCCTTTACAGCGGGAGTTTTTGCAGTTTTAAAAGGGCAGTTGCAGAGGTTTGGCAGGCGCATATTTTGTCTGCGTTCAAAGATGCATCTTTTGGGTTATATTTTGAAGAGGTTTTTGATTCTGGAAGTTACTAGGGAAGAACAGAAAAAAAAAGAAAAAGAAAAGACAAAGGGTTTCTTACTGCTGCTTCAAAGAAAAAAAAAAAAGAGGAAGTTTCAACCTTGGTTCAGCTGATACTGATTTATTGTTTGGGATGTTGTTGGGTGGTTGGGTAGTGTAGCTTTGTTTGACATTGAACTGCACTAATTACACATCAATAAGAGGGATTATGTTTAGTGATTAATTGCCCATTTCTTCATCATTTGTTAATCAATATGGTTTTTAGTTTCCCAGTCGCCCATTCTCTTCTGCTTTTGGTTGGAAATAA

mRNA sequence

ATGAAAAGTTCTAGTTGTTCACAAAATGCTGATGGGAGTTGGGTTGGGATGTTAATTGAAACACTGAACAGAGCCAATAGTTCTATAAGTTACAGTTGCCCAAATCATCCTGCCTGCCTGCCTGCCTTTACAGCGGGAGTTTTTGCAGTTTTAAAAGGGCAGTTGCAGAGTCGCCCATTCTCTTCTGCTTTTGGTTGGAAATAA

Coding sequence (CDS)

ATGAAAAGTTCTAGTTGTTCACAAAATGCTGATGGGAGTTGGGTTGGGATGTTAATTGAAACACTGAACAGAGCCAATAGTTCTATAAGTTACAGTTGCCCAAATCATCCTGCCTGCCTGCCTGCCTTTACAGCGGGAGTTTTTGCAGTTTTAAAAGGGCAGTTGCAGAGTCGCCCATTCTCTTCTGCTTTTGGTTGGAAATAA

Protein sequence

MKSSSCSQNADGSWVGMLIETLNRANSSISYSCPNHPACLPAFTAGVFAVLKGQLQSRPFSSAFGWK
Homology
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BLAST of CmaCh04G023260 vs. NCBI nr
Match: KAG7032756.1 (hypothetical protein SDJN02_06806, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-09
Identity = 36/48 (75.00%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 1  MKSSSCS-------QNADGSWVGMLIETLNRANSSISYSCPNHPACLP 42
          MKS S S       QNADGSWVGMLIETLN  NS+ISYSCPNHPACLP
Sbjct: 1  MKSYSSSQFLMAMGQNADGSWVGMLIETLNSTNSAISYSCPNHPACLP 48

The following BLAST results are available for this feature:
BLAST of CmaCh04G023260 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G023260 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G023260 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032756.12.2e-0975.00hypothetical protein SDJN02_06806, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh04G023260 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G023260.1CmaCh04G023260.1mRNA